Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq57 259 6e-64 seq6 194 2e-44 seq175 140 4e-28 seq2 129 7e-25 seq3 125 9e-24 seq56 105 8e-18 seq83 102 1e-16 seq63 87.8 2e-12 seq171 84.2 3e-11 >seq57 Length=15126812 Score = 259 bits (286), Expect = 6e-64 Identities = 606/902 (67%), Gaps = 32/902 (4%) Strand=Plus/Minus Query 33276 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33335 ||||| |||||||| | |||| ||||| || | || || | || ||||| |||||| Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261 Query 33336 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAAT 33395 || | ||| ||| | |||||||| ||||| || || || || |||| || ||||| Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201 Query 33396 CCCAATTCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCA--- 33452 |||| ||| || | || ||||| || ||||| || | | | | ||||| | Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144 Query 33453 CAATTCATTCCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGAT 33512 ||||||||||| |||| || || || | ||| | || || || || | ||| || Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084 Query 33513 ACCGCATTTGTTATAATAAATCTAACGGTTTCTTCACTC--GGTGGATGTAATAAATGTT 33570 || ||||| || || | || | || | || ||| | || | || | Sbjct 10750083 ACAGCATTGACAATTATTTCCTTGAC--TCACTACTCTAATGGTTTGTATACCAGGTGCT 10750026 Query 33571 TAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAG 33630 | |||| || || | ||||| || || | |||||| |||| |||||| | || | | Sbjct 10750025 TGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACTGG 10749967 Query 33631 AAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATC 33690 |||| ||||| || ||||| || || | || || ||||||||||| || || || || | Sbjct 10749966 AAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGAAC 10749907 Query 33691 CGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGC 33750 | ||||||| ||| ||| | |||||||| || | || |||||||| || Sbjct 10749906 CAGAAAAGAT--TTCTTTCG-CAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGCC- 10749851 Query 33751 TGTCATGTATCCACTTTTGAGCCCAA-------TCGGCCTTCTTTTTTACACAAGGCATC 33803 || | ||||||| | | | || || |||||||| | |||||||||| Sbjct 10749850 --TCTT-TATCCACAATCCAACACAGGGTCACGTCTGCCTTCTTCAT---ACAAGGCATC 10749797 Query 33804 GTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATC 33863 |||| |||||||| ||||| ||| |||| || |||||| ||| | || || Sbjct 10749796 CTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAATA 10749737 Query 33864 AAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACAT 33923 | ||||| ||||| | ||||| ||||| || ||||| || || || || |||||||| Sbjct 10749736 AGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAACAG 10749677 Query 33924 CTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATT 33983 | || || ||||| || |||||| | |||||| || | | |||||||| ||||| Sbjct 10749676 CGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTATA 10749617 Query 33984 CCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA--ATATTTTTCGTCTGGTG 34041 ||||||||||| ||||| || |||| || | |||||| || |||||| || || Sbjct 10749616 CCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGGCT 10749557 Query 34042 TTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATG 34101 | || | ||| | | | || || || | ||| || | || ||||||| || | Sbjct 10749556 TCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAAGG 10749497 Query 34102 ATGCCTCTGCCTTT-TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAACA 34160 | ||| ||| |||| || ||||| | |||||| ||||| ||||| || || || |||||| Sbjct 10749496 AGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAACA 10749438 Query 34161 AA 34162 || Sbjct 10749437 AA 10749436 >seq6 Length=52350410 Score = 194 bits (214), Expect = 2e-44 Identities = 317/454 (70%), Gaps = 6/454 (1%) Strand=Plus/Minus Query 33558 TGTAATAAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTA 33617 |||| || || || ||||||| || || ||||| ||||| |||||||| ||| |||| Sbjct 1187174 TGTACCAAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTA 1187115 Query 33618 ATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATG 33677 || | || || ||||| ||||| || ||||| || || | || | ||||| ||| | Sbjct 1187114 ATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTT 1187055 Query 33678 GAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCT 33737 | || || || || ||||||| ||||||||| || ||||||| || | | ||| Sbjct 1187054 GGTGCAAAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCT 1186995 Query 33738 CCATAAC-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACA 33794 |||| || | || ||| ||||| |||| || |||| ||| ||| Sbjct 1186994 CCATTGGTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCTTC---ACA 1186938 Query 33795 CAAGGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAA 33854 | |||||||||| |||||||| | || | | |||| || |||||||| | || Sbjct 1186937 GGAAGCATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAA 1186878 Query 33855 GTATCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCG 33914 || || | | ||||| ||||| || ||| | |||||||||||||| | || || || Sbjct 1186877 GTGTCAGTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCA 1186818 Query 33915 TAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCA 33974 |||||| | ||| || ||||| || |||||| | ||||| || || || |||||| Sbjct 1186817 ATGAAACAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCA 1186758 Query 33975 TTCACTATTCCATCACTGGCTGCAAAAAACGCCA 34008 |||||| | |||||||||| |||||||| |||| Sbjct 1186757 TTCACTGTGTCATCACTGGCAGCAAAAAAAGCCA 1186724 >seq175 Length=2612143 Score = 140 bits (154), Expect = 4e-28 Identities = 267/393 (68%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 33771 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33830 |||||||| || || || || ||| | ||| ||||| || | ||||| | | | | | Sbjct 1473349 GCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTAAATAAAAACTCT 1473290 Query 33831 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33890 | | || |||| | | |||| ||| |||| | || || || || || ||| Sbjct 1473289 CTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATCTCTGAGTGAGCA 1473230 Query 33891 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 33950 || || ||| |||| ||| || |||||||| |||||| | || ||||| || Sbjct 1473229 TTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACGTGCACGTC---- 1473174 Query 33951 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAAT 34010 | || || ||| | ||||||||||| || ||| |||| |||| ||||||||| || || Sbjct 1473173 CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCAAAAAAGGCTAAG 1473114 Query 34011 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 34070 | || ||||||| || | |||||| | || ||||| | | || ||| || Sbjct 1473113 ATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAAGGGAGATCCTTT 1473054 Query 34071 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 34130 |||| || | || || ||||||| || |||| || || | |||||||| ||||| Sbjct 1473053 GATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTATACATCTTCCAA 1472994 Query 34131 ATGTCATGATATTGGATTGGGAAAATAACAAAT 34163 || ||| | || |||||||| ||||| |||||| Sbjct 1472993 ATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961 >seq2 Length=75421681 Score = 129 bits (142), Expect = 7e-25 Identities = 100/119 (84%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 188489 GTTACTTTCTATGATGCGCGTATCGTTATACAAGCTTTCATGTTGACTACTGCAGTGTTT 188548 ||||| |||||||||| | || || | ||||||||||| ||||||||||||||||| Sbjct 17740035 GTTACCTTCTATGATGTGTTCATTATTCTGCAAGCTTTCATACTGACTACTGCAGTGTTT 17739976 Query 188549 CTTGCTCTGACTACATGTACTCTACAATCAAAGAGAGATTTCAGTAAACTTGTAACAGG 188607 |||| | ||||| ||| ||||||||||||||||||||||||||| ||| ||| | |||| Sbjct 17739975 CTTGGTTTGACTGCATATACTCTACAATCAAAGAGAGATTTCAGCAAATTTGGAGCAGG 17739917 Score = 86.0 bits (94), Expect = 8e-12 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 188170 CGTGCTCCTCCATCGAGGACGACTTCAACTATGACAGCTCGGTGGCGTCTGCCAGCGTGC 188229 ||||| ||||||||||||| ||||||||||| | ||||| ||||| || |||||||||| Sbjct 17752117 CGTGCACCTCCATCGAGGATGACTTCAACTACGGCAGCTGCGTGGCCTCAGCCAGCGTGC 17752058 Query 188230 ACATACGAATGG 188241 |||| || |||| Sbjct 17752057 ACATCCGGATGG 17752046 >seq3 Length=68754498 Score = 125 bits (138), Expect = 9e-24 Identities = 110/137 (80%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62388 ACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62447 || || |||||||| ||||| ||||| ||||| || || |||||||| || ||||| | Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064 Query 62448 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62507 ||||||||||| |||| || ||||||||||| ||||||||||| || || | | |||| Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124 Query 62508 CTATTTCTAAGACCGTA 62524 |||||||| | ||| || Sbjct 19114125 CTATTTCTGATACCATA 19114141 Score = 113 bits (124), Expect = 6e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 62619 GATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAAT 62678 || ||| |||| || ||||| || || | ||||| ||||| | ||| || || || | Sbjct 19119052 GAGCCTTCATAGGTCTCATAGGGGCCATACTTCTTGGCTAGCTCACAGCTGGCTTCCAGA 19119111 Query 62679 GCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCA 62738 || || |||||||| ||||||||||| | |||||| || || ||||| ||||| ||| Sbjct 19119112 GCTCCATAATAAATCGTTTCAAAGATTTGCTTATTCAGTAACTGGGCTTCTGGGCTTTCA 19119171 Query 62739 AATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGT 62798 || ||||| | | || ||||| || || |||| ||||| || ||||| || || || Sbjct 19119172 AAAGGATATCTCATCAGGATAAAAGCATCTGCTAGACCTTGCACCCCAATTCCAATGGGG 19119231 Query 62799 CTATGTCTCTTATTAGA 62815 | ||| | ||||| || Sbjct 19119232 CGATGGCGTTTATTTGA 19119248 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 63263 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCT 63322 || |||||||||||| |||||||| |||||||| || || | || ||||| | | | Sbjct 19125208 CTCCACTCGTTTCATGAAGAGATCTGGAATCCACAGGGCAAAGAAAAGATCCCGGGCACG 19125267 Query 63323 ATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63381 ||||| || || ||||| ||||| |||||| || || ||| | | || || | |||| Sbjct 19125268 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCTAAGTGCC 19125326 Query 63382 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63415 | || |||| ||| || || | |||||||||| Sbjct 19125327 AAGGCTCCAGGTAAATAGCAAATGCTCCAGGCCG 19125360 >seq56 Length=15139244 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| ||||| || || | || || |||||||||||||||||||| || || | ||| | Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||||| ||| || || || || ||||||| ||||| || |||||||||| Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161 Query 33724 C 33724 | Sbjct 9265160 C 9265160 >seq83 Length=10591344 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 |||| |||| |||||| | || || ||||| ||||| || ||||| || || || || | Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | ||||| ||||| || || || || || ||||||||||||||||| || |||||||| | Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277 Query 33724 C 33724 | Sbjct 7356278 C 7356278 >seq63 Length=13740492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 31348 TGTACTTCTTCAAGTTCTGGATAATATATA--CGTTGATAGATTAGCTGAGCTATTCTAT 31405 || |||||||| | ||||||||| | | | |||| | | || ||||| || || | || Sbjct 12332013 TGAACTTCTTCTATGTCTGGATAAAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGAT 12331954 Query 31406 CTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTC 31465 | || ||||| | |||| | ||| ||| ||||| | | | || | |||| Sbjct 12331953 CGCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAACAATACAAAACCAACATTTC 12331894 Query 31466 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 31522 | ||||||||||| ||||| ||||| |||||| |||||| | ||||| | || | Sbjct 12331893 CTCTATAATCTTCATCTATAACACCAGCTCCTACATCAATGAAGTGTTTTACAGCCAAGC 12331834 Query 31523 CAGACCTAGGAGCTATTCTACCATAGCA 31550 |||| | ||||||| ||| |||||||| Sbjct 12331833 CAGAGCGTGGAGCTACTCTTCCATAGCA 12331806 >seq171 Length=3042471 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 31347 TTGTACTTCTTCAAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31406 ||| |||||||| | |||||||||| | || |||| | | || ||||| || || | ||| Sbjct 1173475 TTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCAATC 1173534 Query 31407 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31466 || ||||| | |||| | ||| ||| ||||| | | || || | ||||| Sbjct 1173535 GCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAGCAATACAACACCAACATTTCC 1173594 Query 31467 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31523 ||||||||||| ||||| ||||| |||||| | | || | ||||| | || || Sbjct 1173595 TCTATAATCTTCATCTATAACACCAGCTCCTACACCGATGAAGTGTTTTACAGCCAAGCC 1173654 Query 31524 AGACCTAGGAGCTATTCTACCATAGCA 31550 ||| | ||| ||| ||| ||| |||| Sbjct 1173655 AGAGCGTGGAACTACTCTTCCA-AGCA 1173680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629731803097440