Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq57 203 3e-47
seq6 163 3e-35
seq175 127 2e-24
seq83 120 3e-22
seq3 96.9 3e-15
>seq57
Length=15126812
Score = 203 bits (224), Expect = 3e-47
Identities = 603/916 (66%), Gaps = 28/916 (3%)
Strand=Plus/Minus
Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366
||||||| | |||| | ||| |||||| | || | |||| |||| || | ||
Sbjct 10750336 ATTCTCTGTTGGGTTTGACATCACTCCCATCCTCTGGTGCTCACCTACTC-TCTTCTCAG 10750278
Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426
| || |||||||| ||||||||||| ||| |||||| ||| ||| || || | |||
Sbjct 10750277 AGAAGTTAGTCTTTCCTTCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTC 10750218
Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486
|||| | || | | |||| | || | | || ||||| || ||||| || | ||
Sbjct 10750217 TGAAAATCTTGTTAAAACCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGTTCT 10750158
Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546
| ||||||| |||||||| || || | | ||| || | || |||| | ||||
Sbjct 10750157 GCTTCATTAAAGTGCAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACT 10750098
Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTA-TAACTTCCTTAGATGGTGGA 11605
||| |||||| | || |||| | ||||| | | | | ||| | || |||||
Sbjct 10750097 CCTCTTCTATTCTGACAGCATTGACAATTATTTCCTTGACTCACTACTCTA-ATGGTTTG 10750039
Query 11606 TGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTT 11665
| || | || || |||| | || | ||||||||| |||||||| || |||| |||
Sbjct 10750038 TATACCAGGTGCTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTA 10749980
Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725
|| || ||| | |||||||| | || ||||||| ||| |||| || | |||||||||
Sbjct 10749979 ATAAGCTCACTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATT 10749920
Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785
| ||||| |||||||||||| ||| | | | |||| ||||| ||||| || ||||
Sbjct 10749919 GATGCAAAAGAACCAGAAAAG---ATTTCTTTCGCAGCAGCAAAAGCTACAACATGTTCT 10749863
Query 11786 CCATA--TACCTTGTTGCTAGATATCCATTTTCTGGCCCA--ATCA--GCTTTCTTTTTT 11839
||||| || | | || |||||| || | || ||| || ||| ||
Sbjct 10749862 CCATAGGTAGCCTCTT------TATCCACAATCCAACACAGGGTCACGTCTGCCTTCTTC 10749809
Query 11840 ACGCATTCCATTGTTTCTATAGCGTTAAATA--AATGCATTTTTTCTATATTATCTCTTA 11897
| || ||| |||| || || || || | || | ||||| | |||| ||
Sbjct 10749808 ATACAAGGCATCCTTTCAATGGCATTGAAGAGGAAGTC--CCTTTCTTTGACATCTTTTG 10749751
Query 11898 CATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAA 11957
|| | || || | | ||| ||||| | ||||| || || ||||| || ||||| |
Sbjct 10749750 TGTAAATGTCAATAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGA 10749691
Query 11958 ATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAAT 12017
| ||||||||||| || || |||| | || || || ||||| ||| | | |
Sbjct 10749690 ACCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGT 10749631
Query 12018 TCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATT 12077
| |||||||| ||||||||||| | ||||| || || || | | ||||||||||
Sbjct 10749630 TTTCATTTACTATACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATC 10749571
Query 12078 TTTCGTCTTTAG---TTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTT 12134
||| |||| || | | ||||| | | | || || || | |||||| | |
Sbjct 10749570 TTT-TTCTTCAGGCTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCT 10749512
Query 12135 CAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAA 12194
|| | ||||| || ||| | || || ||||| | |||||||||||| || | |
Sbjct 10749511 CAGCTGTCCAGAAGGAGGCCCTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCA 10749452
Query 12195 TAGGGAAAATAACGAA 12210
|||| || ||||| ||
Sbjct 10749451 TAGGAAAGATAACAAA 10749436
>seq6
Length=52350410
Score = 163 bits (180), Expect = 3e-35
Identities = 494/756 (65%), Gaps = 14/756 (2%)
Strand=Plus/Minus
Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG 11388
||| |||||| | ||||| || | |||| ||| || |||||||| |||||| |
Sbjct 1187449 CACTCCCATCCTCTGATACTCTCCTACTCTA--TTCTCAACTGTTAGTCTTTCCTTCTGG 1187392
Query 11389 TGATATATACTCCATAAAGCTAAAAGGAT-TATATACATTGAAGACTTTTTCACAACCTA 11447
| | |||| |||| | ||| | ||| ||| | | ||| |||| | || | | || |
Sbjct 1187391 TAAAATATTCTCCCTGAAG-TCAAATGATATTTCTACTCTGAAAATCTTGTTAAAATTGA 1187333
Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507
|| || | || ||||| || ||||| || ||||| ||||||| ||||||
Sbjct 1187332 GTTCCAGTATAAGCCTGTCTGCCACAAATTCAATGTACTGCTTCATTAAAGTACAATTTG 1187273
Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567
| || || || | ||| || | || |||| || | ||||| |||||| | || ||||
Sbjct 1187272 TTCCAATGAGCTTCACAGGCAAGGCTTCTGTGAAGATCTCCTATTCTATCCTGACAGCAT 1187213
Query 11568 CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTA 11627
| ||||| | | | | || |||||| |||| || || || ||||| |
Sbjct 1187212 TGACAATTATTTCCTTGACTCGCTGCTCTGATGGTTTGTGTACCAAGTGCTTGAACATCA 1187153
Query 11628 AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687
|| ||||||||||| |||| ||| || ||| ||| || || ||||| |||||||| |
Sbjct 1187152 GGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCATTGGAAAATGTGA 1187093
Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGA 11747
|| ||||||| ||| |||| | | ||| ||| | | ||||| |||||||||||||
Sbjct 1187092 GGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACCAGAAAAGA 1187033
Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT---ATACCTTGTTGCTAG 11804
||||| |||||||| |||| ||||| | |||||||| ||| ||| |
Sbjct 1187032 TGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTGGTCGCCTCTTTGTCTG 1186973
Query 11805 ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864
||||| ||||| || || || || || ||| ||||| || || |
Sbjct 1186972 CAATCCAACGCAAGGCCCCGTCTGC---CTCCTTCACAGGAAGCATCGTTTCAATGGCAT 1186916
Query 11865 TAAATAAATGCATT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922
| | || | ||| ||||| | |||| | | | | || || | | | ||| ||
Sbjct 1186915 TGA--CAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTAAGGAGACTGTA 1186858
Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982
||| || ||| | || ||||| || || |||| || ||| |||||| || || ||||
Sbjct 1186857 CATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGAGCTTCTGT 1186798
Query 11983 ACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042
| || || || ||||| ||||| || || ||||| || | ||||||| |
Sbjct 1186797 AATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCATCACTGGC 1186738
Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078
|||||||| || || | || | |||||| |||
Sbjct 1186737 AGCAAAAAAAGCCAGGACGTGAGATGTAAAGTTTTT 1186702
>seq175
Length=2612143
Score = 127 bits (140), Expect = 2e-24
Identities = 276/408 (68%), Gaps = 10/408 (2%)
Strand=Plus/Minus
Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865
|||||||| ||||||||| ||||| || || || || || |||||| || | |||
Sbjct 1473362 TATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTT 1473303
Query 11866 AAATAAATGCATTTT-TTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924
||||||| | | | |||| | |||||| | || | |||||| | ||| || || |
Sbjct 1473302 AAATAAAAACTCTCTCTTCT-TGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATA 1473244
Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984
| ||||| ||| ||| ||||| || | ||| ||||||||||| | |||||||||
Sbjct 1473243 TCTCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAA 1473184
Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044
|| || ||| || | || | ||||| ||||||||||| |||| || | ||
Sbjct 1473183 CGTGCACGTCC----TAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTG 1473128
Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTT--AATTTATCCCA 12102
||||||| |||| || || ||||| ||| ||| | | | ||| | | |||
Sbjct 1473127 CAAAAAAGGCTAAGATGTGGGAGATAAA--ATTCTTCTTATCTGGTTTAAGCGCGTTCCA 1473070
Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162
| | | ||| |||||||| || | || || | ||||| || || | | |||
Sbjct 1473069 GTAAGGGAGATCCTTTGATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTG 1473010
Query 12163 TTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210
|||||||| ||||| |||||| | |||| || || ||||| || ||
Sbjct 1473009 CTTATACATCTTCCAAATATCAGGGTACTGGATTGGAAAAATGACAAA 1472962
>seq83
Length=10591344
Score = 120 bits (132), Expect = 3e-22
Identities = 107/134 (80%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713
|| |||| ||| || || ||||| |||||||| | || ||||||| ||| ||||| ||
Sbjct 7356160 TCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCTTG 7356219
Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773
| ||| ||||| | ||||| |||||||||||||| ||||| |||||||| ||||| |||
Sbjct 7356220 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCT 7356279
Query 11774 ACTACTCTTTCTCC 11787
|| || | ||||||
Sbjct 7356280 ACCACACGTTCTCC 7356293
>seq3
Length=68754498
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197
|||||||| ||||| || || ||||| | ||||| || || || || || |||||||||
Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064
Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257
||||||||||| | | || |||| || || ||||| |||||||| || || || |
Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124
Query 37258 CTATTTCTCAATCCAT 37273
|||||||| | ||||
Sbjct 19114125 CTATTTCTGATACCAT 19114140
Score = 82.4 bits (90), Expect = 7e-11
Identities = 115/159 (72%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 38392 CTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450
||||||| ||| || | | | || || || || || | |||||||| ||||| ||||
Sbjct 19133896 CTAGACAGTTGTGGGCGGTTG-GTACCCGCATTGAAGAGAGTAGGAGAGGCATGGGTGAA 19133954
Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510
||| || || || | | || |||||||| ||| || |||| || || | ||| ||
Sbjct 19133955 CCACTTCTCAGAAAGAAGGTTGTATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGGAT 19134014
Query 38511 ACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549
|| | ||| || ||||| ||||||||||| ||||||||
Sbjct 19134015 CCCCACAGAGACTCTCATCAGCATATGTTGGGGTCTTTC 19134053
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468460975209120
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