Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq57 203 3e-47 seq6 163 3e-35 seq175 127 2e-24 seq83 120 3e-22 seq3 96.9 3e-15 >seq57 Length=15126812 Score = 203 bits (224), Expect = 3e-47 Identities = 603/916 (66%), Gaps = 28/916 (3%) Strand=Plus/Minus Query 11308 ATTCTCTTCTTTATTTGTAAACACCCCCATCTTTTGATATTCACTAACTCGTCGT-TCGA 11366 ||||||| | |||| | ||| |||||| | || | |||| |||| || | || Sbjct 10750336 ATTCTCTGTTGGGTTTGACATCACTCCCATCCTCTGGTGCTCACCTACTC-TCTTCTCAG 10750278 Query 11367 AAAAATTAGTCTTACCTTCTAGTGATATATACTCCATAAAGCTAAAAGGATTATATACAT 11426 | || |||||||| ||||||||||| ||| |||||| ||| ||| || || | ||| Sbjct 10750277 AGAAGTTAGTCTTTCCTTCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTC 10750218 Query 11427 TGAAGACTTTTTCACAACCTAACTCTGTTAATAATCTATCTGCGACGAATTCTATATACT 11486 |||| | || | | |||| | || | | || ||||| || ||||| || | || Sbjct 10750217 TGAAAATCTTGTTAAAACCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGTTCT 10750158 Query 11487 GAGACATTAAACAACAATTCATACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACT 11546 | ||||||| |||||||| || || | | ||| || | || |||| | |||| Sbjct 10750157 GCTTCATTAAAGTGCAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACT 10750098 Query 11547 CCTTTTCTATATTAACCGCATCAATGATTATCGACGTTA-TAACTTCCTTAGATGGTGGA 11605 ||| |||||| | || |||| | ||||| | | | | ||| | || ||||| Sbjct 10750097 CCTCTTCTATTCTGACAGCATTGACAATTATTTCCTTGACTCACTACTCTA-ATGGTTTG 10750039 Query 11606 TGTAATAAATGTTTAAACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTT 11665 | || | || || |||| | || | ||||||||| |||||||| || |||| ||| Sbjct 10750038 TATACCAGGTGCTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTA 10749980 Query 11666 ATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATA 11725 || || ||| | |||||||| | || ||||||| ||| |||| || | ||||||||| Sbjct 10749979 ATAAGCTCACTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATT 10749920 Query 11726 GCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCT 11785 | ||||| |||||||||||| ||| | | | |||| ||||| ||||| || |||| Sbjct 10749919 GATGCAAAAGAACCAGAAAAG---ATTTCTTTCGCAGCAGCAAAAGCTACAACATGTTCT 10749863 Query 11786 CCATA--TACCTTGTTGCTAGATATCCATTTTCTGGCCCA--ATCA--GCTTTCTTTTTT 11839 ||||| || | | || |||||| || | || ||| || ||| || Sbjct 10749862 CCATAGGTAGCCTCTT------TATCCACAATCCAACACAGGGTCACGTCTGCCTTCTTC 10749809 Query 11840 ACGCATTCCATTGTTTCTATAGCGTTAAATA--AATGCATTTTTTCTATATTATCTCTTA 11897 | || ||| |||| || || || || | || | ||||| | |||| || Sbjct 10749808 ATACAAGGCATCCTTTCAATGGCATTGAAGAGGAAGTC--CCTTTCTTTGACATCTTTTG 10749751 Query 11898 CATATGTATCTATTAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAA 11957 || | || || | | ||| ||||| | ||||| || || ||||| || ||||| | Sbjct 10749750 TGTAAATGTCAATAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGA 10749691 Query 11958 ATCCATAGAAACATCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAAT 12017 | ||||||||||| || || |||| | || || || ||||| ||| | | | Sbjct 10749690 ACCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGT 10749631 Query 12018 TCTCATTTACAATACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATT 12077 | |||||||| ||||||||||| | ||||| || || || | | |||||||||| Sbjct 10749630 TTTCATTTACTATACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATC 10749571 Query 12078 TTTCGTCTTTAG---TTAATTTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTT 12134 ||| |||| || | | ||||| | | | || || || | |||||| | | Sbjct 10749570 TTT-TTCTTCAGGCTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCT 10749512 Query 12135 CAACGGTCCAAAAACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAA 12194 || | ||||| || ||| | || || ||||| | |||||||||||| || | | Sbjct 10749511 CAGCTGTCCAGAAGGAGGCCCTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCA 10749452 Query 12195 TAGGGAAAATAACGAA 12210 |||| || ||||| || Sbjct 10749451 TAGGAAAGATAACAAA 10749436 >seq6 Length=52350410 Score = 163 bits (180), Expect = 3e-35 Identities = 494/756 (65%), Gaps = 14/756 (2%) Strand=Plus/Minus Query 11329 CACCCCCATCTTTTGATATTCACTAACTCGTCGTTCGAAAAAATTAGTCTTACCTTCTAG 11388 ||| |||||| | ||||| || | |||| ||| || |||||||| |||||| | Sbjct 1187449 CACTCCCATCCTCTGATACTCTCCTACTCTA--TTCTCAACTGTTAGTCTTTCCTTCTGG 1187392 Query 11389 TGATATATACTCCATAAAGCTAAAAGGAT-TATATACATTGAAGACTTTTTCACAACCTA 11447 | | |||| |||| | ||| | ||| ||| | | ||| |||| | || | | || | Sbjct 1187391 TAAAATATTCTCCCTGAAG-TCAAATGATATTTCTACTCTGAAAATCTTGTTAAAATTGA 1187333 Query 11448 ACTCTGTTAATAATCTATCTGCGACGAATTCTATATACTGAGACATTAAACAACAATTCA 11507 || || | || ||||| || ||||| || ||||| ||||||| |||||| Sbjct 1187332 GTTCCAGTATAAGCCTGTCTGCCACAAATTCAATGTACTGCTTCATTAAAGTACAATTTG 1187273 Query 11508 TACCTATAAGATCCACCGGAATAGCAACTGTCAAAAACTCCTTTTCTATATTAACCGCAT 11567 | || || || | ||| || | || |||| || | ||||| |||||| | || |||| Sbjct 1187272 TTCCAATGAGCTTCACAGGCAAGGCTTCTGTGAAGATCTCCTATTCTATCCTGACAGCAT 1187213 Query 11568 CAATGATTATCGACGTTATAACTTCCTTAGATGGTGGATGTAATAAATGTTTAAACATTA 11627 | ||||| | | | | || |||||| |||| || || || ||||| | Sbjct 1187212 TGACAATTATTTCCTTGACTCGCTGCTCTGATGGTTTGTGTACCAAGTGCTTGAACATCA 1187153 Query 11628 AACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAAAATGTTA 11687 || ||||||||||| |||| ||| || ||| ||| || || ||||| |||||||| | Sbjct 1187152 GGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCATTGGAAAATGTGA 1187093 Query 11688 ATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCAGAAAAGA 11747 || ||||||| ||| |||| | | ||| ||| | | ||||| ||||||||||||| Sbjct 1187092 GGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACCAGAAAAGA 1187033 Query 11748 ATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCAT---ATACCTTGTTGCTAG 11804 ||||| |||||||| |||| ||||| | |||||||| ||| ||| | Sbjct 1187032 TGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTGGTCGCCTCTTTGTCTG 1186973 Query 11805 ATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGT 11864 ||||| ||||| || || || || || ||| ||||| || || | Sbjct 1186972 CAATCCAACGCAAGGCCCCGTCTGC---CTCCTTCACAGGAAGCATCGTTTCAATGGCAT 1186916 Query 11865 TAAATAAATGCATT--TTTTCTATATTATCTCTTACATATGTATCTATTAATAAACTATA 11922 | | || | ||| ||||| | |||| | | | | || || | | | ||| || Sbjct 1186915 TGA--CAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTAAGGAGACTGTA 1186858 Query 11923 CATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGA 11982 ||| || ||| | || ||||| || || |||| || ||| |||||| || || |||| Sbjct 1186857 CATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGAGCTTCTGT 1186798 Query 11983 ACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGA 12042 | || || || ||||| ||||| || || ||||| || | ||||||| | Sbjct 1186797 AATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCATCACTGGC 1186738 Query 12043 TGCAAAAAATGCTAGTATATGTTTTATAAAGTATTT 12078 |||||||| || || | || | |||||| ||| Sbjct 1186737 AGCAAAAAAAGCCAGGACGTGAGATGTAAAGTTTTT 1186702 >seq175 Length=2612143 Score = 127 bits (140), Expect = 2e-24 Identities = 276/408 (68%), Gaps = 10/408 (2%) Strand=Plus/Minus Query 11806 TATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCCATTGTTTCTATAGCGTT 11865 |||||||| ||||||||| ||||| || || || || || |||||| || | ||| Sbjct 1473362 TATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTT 1473303 Query 11866 AAATAAATGCATTTT-TTCTATATTATCTCTTACATATGTATCTATTAATAAACTATACA 11924 ||||||| | | | |||| | |||||| | || | |||||| | ||| || || | Sbjct 1473302 AAATAAAAACTCTCTCTTCT-TGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATA 1473244 Query 11925 TTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACATCGTGCCTCTGAAC 11984 | ||||| ||| ||| ||||| || | ||| ||||||||||| | ||||||||| Sbjct 1473243 TCTCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAA 1473184 Query 11985 ACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAATACCATCACTAGATG 12044 || || ||| || | || | ||||| ||||||||||| |||| || | || Sbjct 1473183 CGTGCACGTCC----TAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTG 1473128 Query 12045 CAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGTT--AATTTATCCCA 12102 ||||||| |||| || || ||||| ||| ||| | | | ||| | | ||| Sbjct 1473127 CAAAAAAGGCTAAGATGTGGGAGATAAA--ATTCTTCTTATCTGGTTTAAGCGCGTTCCA 1473070 Query 12103 ATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAAAACTTGCCACTGATTG 12162 | | | ||| |||||||| || | || || | ||||| || || | | ||| Sbjct 1473069 GTAAGGGAGATCCTTTGATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTG 1473010 Query 12163 TTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAACGAA 12210 |||||||| ||||| |||||| | |||| || || ||||| || || Sbjct 1473009 CTTATACATCTTCCAAATATCAGGGTACTGGATTGGAAAAATGACAAA 1472962 >seq83 Length=10591344 Score = 120 bits (132), Expect = 3e-22 Identities = 107/134 (80%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 11654 TCGTCTCTACTTATTAGTTCATTAGAAAATGTTAATCCGGGCATCAATCCTCGttttttt 11713 || |||| ||| || || ||||| |||||||| | || ||||||| ||| ||||| || Sbjct 7356160 TCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCTTG 7356219 Query 11714 ATCCAAAATATAGCAGCAAATGAACCAGAAAAGAATATTCCCTCCACAGCTGCAAATGCT 11773 | ||| ||||| | ||||| |||||||||||||| ||||| |||||||| ||||| ||| Sbjct 7356220 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCT 7356279 Query 11774 ACTACTCTTTCTCC 11787 || || | |||||| Sbjct 7356280 ACCACACGTTCTCC 7356293 >seq3 Length=68754498 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 37138 ACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTGCTAGTATATGGTTCAATG 37197 |||||||| ||||| || || ||||| | ||||| || || || || || ||||||||| Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064 Query 37198 GACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGCATTGGTGCTATTAGAAGG 37257 ||||||||||| | | || |||| || || ||||| |||||||| || || || | Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124 Query 37258 CTATTTCTCAATCCAT 37273 |||||||| | |||| Sbjct 19114125 CTATTTCTGATACCAT 19114140 Score = 82.4 bits (90), Expect = 7e-11 Identities = 115/159 (72%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 38392 CTAGACATTTGAGG-CAATGGAGTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAA 38450 ||||||| ||| || | | | || || || || || | |||||||| ||||| |||| Sbjct 19133896 CTAGACAGTTGTGGGCGGTTG-GTACCCGCATTGAAGAGAGTAGGAGAGGCATGGGTGAA 19133954 Query 38451 CCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATCTATATCACCGCCGTGAAT 38510 ||| || || || | | || |||||||| ||| || |||| || || | ||| || Sbjct 19133955 CCACTTCTCAGAAAGAAGGTTGTATGTTTCAATTGCAGCATCAATGTCTTCTTTGTGGAT 19134014 Query 38511 ACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTC 38549 || | ||| || ||||| ||||||||||| |||||||| Sbjct 19134015 CCCCACAGAGACTCTCATCAGCATATGTTGGGGTCTTTC 19134053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468460975209120