Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_003391.1
Length=205719
Score E
Sequences producing significant alignments: (Bits) Value
seq57 264 1e-65
seq6 187 3e-42
seq2 156 6e-33
seq3 131 2e-25
seq175 118 1e-21
seq83 105 9e-18
seq56 102 1e-16
>seq57
Length=15126812
Score = 264 bits (292), Expect = 1e-65
Identities = 609/906 (67%), Gaps = 40/906 (4%)
Strand=Plus/Minus
Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911
||||| |||||||| | |||| ||||| || | || || | || ||||| || |||
Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261
Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971
|||| ||| ||| | |||||||| || ||||| || || | |||| || |||||
Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201
Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCA--- 36028
|||| ||| || | || ||||| |||||||| || | | | | ||||| |
Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144
Query 36029 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAG 36088
||||||||||| || | || || || | ||| | || || || || | ||| || |
Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084
Query 36089 ACCGCGTCTGTTATAATAGATATTAC--TGTTTCTTCACTC----GGTGGATACAATAAA 36142
|| || | | | ||| |||| | || || |||| ||| || | |
Sbjct 10750083 ACAGCAT---TGACAAT---TATTTCCTTGACTCACTACTCTAATGGTTTGTATACCAGG 10750030
Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202
|| || |||| || || | ||||| || |||| |||||| |||| |||||| | ||
Sbjct 10750029 TGCTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCA 10749971
Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262
||||||| ||||| || ||||| || || | || || ||||||||||| || |||||
Sbjct 10749970 CTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAA 10749911
Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 36322
|| ||||||||| ||| ||| | || ||||| || | || |||||||| |
Sbjct 10749910 GAACCAGAAAAG---ATTTCTTTCGCAGCAGCAAAAGCTACAACATGTTCTCCATA---G 10749857
Query 36323 GCACTGTCATGTATCCACTTTTGAGCCCA-------ATCGGCCTTCTTTTTTACACAAGG 36375
| | || | ||||||| | | | || || |||||| || | ||||||
Sbjct 10749856 GTAGCCTC-TTTATCCACAATCCAACACAGGGTCACGTCTGCCTTC---TTCATACAAGG 10749801
Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435
||| | || || ||||| ||||| ||| |||| || |||||| || | ||
Sbjct 10749800 CATCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTC 10749741
Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495
||| | ||||| ||||| | ||||| ||||| || ||||| ||||| || || |||||
Sbjct 10749740 AATAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAA 10749681
Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 36555
||| | || || ||||| || |||||| | |||||| || | | |||||||| ||
Sbjct 10749680 ACAGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTAC 10749621
Query 36556 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA--ATATTTTTCGTTT 36613
||| || |||||||| ||||| || |||| || | |||||| || |||||| |
Sbjct 10749620 TATACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCA 10749561
Query 36614 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 36673
|| | || | ||| | | | || || || | ||| || | || |||||||
Sbjct 10749560 GGCTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAG 10749501
Query 36674 AATGATGCCTCTGCCTTT-TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732
|| || ||| ||| |||| || ||||| | |||||| ||||| ||||| || ||||| ||
Sbjct 10749500 AAGGAGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGAT 10749442
Query 36733 AACAAA 36738
||||||
Sbjct 10749441 AACAAA 10749436
>seq6
Length=52350410
Score = 187 bits (206), Expect = 3e-42
Identities = 312/448 (70%), Gaps = 6/448 (1%)
Strand=Plus/Minus
Query 36140 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 36199
|| || || ||||||| || || ||||| |||||||||||||| ||| |||||| |
Sbjct 1187168 AAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGC 1187109
Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259
|| |||||||| ||||| || ||||| || || | || | ||||| ||| | | |||
Sbjct 1187108 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCA 1187049
Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 36319
|| || |||||||||| |||||||| || || |||| || | | |||||||
Sbjct 1187048 AAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTG 1186989
Query 36320 C-CGGCACT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 36376
|| | || ||| ||||| |||| || |||| ||| ||| | ||
Sbjct 1186988 GTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCTTC---ACAGGAAGC 1186932
Query 36377 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 36436
|| || || || ||||| | || | | |||| || |||||||| | | || |||
Sbjct 1186931 ATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCA 1186872
Query 36437 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496
| | ||||| ||||| || ||| | |||||||||||||| |||| || || ||||
Sbjct 1186871 GTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAA 1186812
Query 36497 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 36556
|| | ||| || ||||| || |||||| | ||||| || || || ||||||||||||
Sbjct 1186811 CAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACT 1186752
Query 36557 ATTCCGTCACTGGCTGCAAAAAACGCCA 36584
| | |||||||| |||||||| ||||
Sbjct 1186751 GTGTCATCACTGGCAGCAAAAAAAGCCA 1186724
>seq2
Length=75421681
Score = 156 bits (172), Expect = 6e-33
Identities = 106/119 (89%), Gaps = 0/119 (0%)
Strand=Plus/Plus
Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539
|||||||||| ||| ||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 17739917 CCTGCTCCAAATTTGCTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAAACCAAGA 17739976
Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598
||||||||||||||||| ||||||||||||| || | |||||||||||| |||||
Sbjct 17739977 AACACTGCAGTAGTCAGTATGAAAGCTTGCAGAATAATGAACACATCATAGAAGGTAAC 17740035
Score = 141 bits (156), Expect = 1e-28
Identities = 162/217 (75%), Gaps = 3/217 (1%)
Strand=Plus/Plus
Query 9218 TTTTAAACTTTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATT 9277
|||||| ||| || |||||| | |||| | || | || ||| |||| ||| |||||
Sbjct 17729581 TTTTAA---TTACTTTTTATTAATTGCTTCTAGAAACCTTAGCAGGTGCAGGAATAGATT 17729637
Query 9278 GATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATG 9337
||| ||||||||||||| | |||| | || |||||||| |||||||| || || || ||
Sbjct 17729638 GATAATATCCAAGTAGAGACTGATGGCAGCCAACACATACTCTTCAGGGGACAGTTTGTG 17729697
Query 9338 TATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGA 9397
|| | || ||| || |||||||| |||||||| ||||| | ||||| || |||||
Sbjct 17729698 CATCAATGCGTGTGTATCATAGATGATGAATCCACAGAAAAGGAGGGCTCCTGCAGCAGC 17729757
Query 9398 CAGGACCAGCTCCACTGTTTCACTTTGCACAAATATC 9434
| ||||| |||||||| ||||| | | ||| |||
Sbjct 17729758 AAAGACCAATTCCACTGTCTCACTATAAAAAAAGATC 17729794
Score = 91.5 bits (100), Expect = 2e-13
Identities = 84/104 (81%), Gaps = 3/104 (3%)
Strand=Plus/Plus
Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906
|||| || |||||||| ||||| || ||||| ||||||| ||||||||||| |||||||
Sbjct 17752046 CCATCCGGATGTGCACGCTGGCTGAGGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 17752105
Query 9907 TGGAGGAGCACGCGTA--GAGGCTC-GGCATGGCCATGGCGGCG 9947
|||||| ||||| ||| | || || || |||||||| || ||
Sbjct 17752106 TGGAGGTGCACGGGTAGCGGGGGTCAGGGCTGGCCATGTCGCCG 17752149
>seq3
Length=68754498
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240
|| ||||||||||| ||||| ||||| ||||| || || |||||||| || ||||| |
Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064
Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300
||||||||||| |||| || ||||||||||| ||||||||||| || || | | ||||
Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124
Query 65301 CTATTTCTAAGACCGTA 65317
|||||||| | ||| ||
Sbjct 19114125 CTATTTCTGATACCATA 19114141
Score = 86.0 bits (94), Expect = 8e-12
Identities = 113/154 (73%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115
|| |||||||||||| |||||||| |||||||| || || | || | ||| | || |
Sbjct 19125208 CTCCACTCGTTTCATGAAGAGATCTGGAATCCACAGGGCAAAGAAAAGATCCCGGGCACG 19125267
Query 66116 ATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCC 66174
||||| || || ||||| ||||| |||||| || || ||| | | || || | ||||
Sbjct 19125268 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCTAAGTGCC 19125326
Query 66175 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208
| || |||| ||| || || | ||||||||||
Sbjct 19125327 AAGGCTCCAGGTAAATAGCAAATGCTCCAGGCCG 19125360
>seq175
Length=2612143
Score = 118 bits (130), Expect = 1e-21
Identities = 262/393 (67%), Gaps = 4/393 (1%)
Strand=Plus/Minus
Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406
|||||||| || || || || ||| | ||| ||| || || | ||||| | | | | |
Sbjct 1473349 GCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTAAATAAAAACTCT 1473290
Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466
| | || |||| | | || | ||| |||| | || || || || || |||
Sbjct 1473289 CTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATCTCTGAGTGAGCA 1473230
Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526
|| || ||| || | ||| || |||||||| |||||| | || || || ||
Sbjct 1473229 TTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACGTGCACGTC---- 1473174
Query 36527 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 36586
| || || ||| | ||||||||||| || ||| | || |||| ||||||||| || ||
Sbjct 1473173 CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCAAAAAAGGCTAAG 1473114
Query 36587 ACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 36646
| || ||||||| || | | |||| | || ||||| | | || ||| ||
Sbjct 1473113 ATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAAGGGAGATCCTTT 1473054
Query 36647 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 36706
|||| || | || || ||||||| || |||| || || | |||||||| |||||
Sbjct 1473053 GATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTATACATCTTCCAA 1472994
Query 36707 ATGTCATGATATTGAATTGGAAAAATAACAAAT 36739
|| ||| | || || ||||||||||| ||||||
Sbjct 1472993 ATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961
>seq83
Length=10591344
Score = 105 bits (116), Expect = 9e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| |||| |||||| | || |||||||| ||||| || ||||| || || || || |
Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277
Query 36300 C 36300
|
Sbjct 7356278 C 7356278
>seq56
Length=15139244
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239
|||| ||||| || || | || ||||||||||||||||||||||| || || | ||| |
Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221
Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299
| ||||| ||||||| ||||| || || || ||||| | ||||| || || |||||||
Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161
Query 36300 C 36300
|
Sbjct 9265160 C 9265160
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 658083140410320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |