Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq57 264 1e-65 seq6 187 3e-42 seq2 156 6e-33 seq3 131 2e-25 seq175 118 1e-21 seq83 105 9e-18 seq56 102 1e-16 >seq57 Length=15126812 Score = 264 bits (292), Expect = 1e-65 Identities = 609/906 (67%), Gaps = 40/906 (4%) Strand=Plus/Minus Query 35852 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 35911 ||||| |||||||| | |||| ||||| || | || || | || ||||| || ||| Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261 Query 35912 TCTAATGATATATTTTCCATGAAATCGAATGGATTGATAACATTATAAAtttttttAAAT 35971 |||| ||| ||| | |||||||| || ||||| || || | |||| || ||||| Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201 Query 35972 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCA--- 36028 |||| ||| || | || ||||| |||||||| || | | | | ||||| | Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144 Query 36029 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAG 36088 ||||||||||| || | || || || | ||| | || || || || | ||| || | Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084 Query 36089 ACCGCGTCTGTTATAATAGATATTAC--TGTTTCTTCACTC----GGTGGATACAATAAA 36142 || || | | | ||| |||| | || || |||| ||| || | | Sbjct 10750083 ACAGCAT---TGACAAT---TATTTCCTTGACTCACTACTCTAATGGTTTGTATACCAGG 10750030 Query 36143 TGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCG 36202 || || |||| || || | ||||| || |||| |||||| |||| |||||| | || Sbjct 10750029 TGCTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCA 10749971 Query 36203 TTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT 36262 ||||||| ||||| || ||||| || || | || || ||||||||||| || ||||| Sbjct 10749970 CTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAA 10749911 Query 36263 GATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCG 36322 || ||||||||| ||| ||| | || ||||| || | || |||||||| | Sbjct 10749910 GAACCAGAAAAG---ATTTCTTTCGCAGCAGCAAAAGCTACAACATGTTCTCCATA---G 10749857 Query 36323 GCACTGTCATGTATCCACTTTTGAGCCCA-------ATCGGCCTTCTTTTTTACACAAGG 36375 | | || | ||||||| | | | || || |||||| || | |||||| Sbjct 10749856 GTAGCCTC-TTTATCCACAATCCAACACAGGGTCACGTCTGCCTTC---TTCATACAAGG 10749801 Query 36376 CATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATC 36435 ||| | || || ||||| ||||| ||| |||| || |||||| || | || Sbjct 10749800 CATCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTC 10749741 Query 36436 AATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 36495 ||| | ||||| ||||| | ||||| ||||| || ||||| ||||| || || ||||| Sbjct 10749740 AATAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAA 10749681 Query 36496 ACATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCAC 36555 ||| | || || ||||| || |||||| | |||||| || | | |||||||| || Sbjct 10749680 ACAGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTAC 10749621 Query 36556 TATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA--ATATTTTTCGTTT 36613 ||| || |||||||| ||||| || |||| || | |||||| || |||||| | Sbjct 10749620 TATACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCA 10749561 Query 36614 GGTGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAA 36673 || | || | ||| | | | || || || | ||| || | || ||||||| Sbjct 10749560 GGCTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAG 10749501 Query 36674 AATGATGCCTCTGCCTTT-TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAAT 36732 || || ||| ||| |||| || ||||| | |||||| ||||| ||||| || ||||| || Sbjct 10749500 AAGGAGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGAT 10749442 Query 36733 AACAAA 36738 |||||| Sbjct 10749441 AACAAA 10749436 >seq6 Length=52350410 Score = 187 bits (206), Expect = 3e-42 Identities = 312/448 (70%), Gaps = 6/448 (1%) Strand=Plus/Minus Query 36140 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 36199 || || || ||||||| || || ||||| |||||||||||||| ||| |||||| | Sbjct 1187168 AAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGC 1187109 Query 36200 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 36259 || |||||||| ||||| || ||||| || || | || | ||||| ||| | | ||| Sbjct 1187108 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCA 1187049 Query 36260 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 36319 || || |||||||||| |||||||| || || |||| || | | ||||||| Sbjct 1187048 AAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTG 1186989 Query 36320 C-CGGCACT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 36376 || | || ||| ||||| |||| || |||| ||| ||| | || Sbjct 1186988 GTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCTTC---ACAGGAAGC 1186932 Query 36377 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 36436 || || || || ||||| | || | | |||| || |||||||| | | || ||| Sbjct 1186931 ATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCA 1186872 Query 36437 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496 | | ||||| ||||| || ||| | |||||||||||||| |||| || || |||| Sbjct 1186871 GTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAA 1186812 Query 36497 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 36556 || | ||| || ||||| || |||||| | ||||| || || || |||||||||||| Sbjct 1186811 CAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACT 1186752 Query 36557 ATTCCGTCACTGGCTGCAAAAAACGCCA 36584 | | |||||||| |||||||| |||| Sbjct 1186751 GTGTCATCACTGGCAGCAAAAAAAGCCA 1186724 >seq2 Length=75421681 Score = 156 bits (172), Expect = 6e-33 Identities = 106/119 (89%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 9480 CCTGCTCCAAGTTTACTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAGAGCAAGA 9539 |||||||||| ||| ||||||||||||||||||||||||||||||||||||| | ||||| Sbjct 17739917 CCTGCTCCAAATTTGCTGAAATCTCTCTTTGATTGTAGAGTATATGCAGTCAAACCAAGA 17739976 Query 9540 AACACTGCAGTAGTCAGCATGAAAGCTTGCATAACGACATGCACATCATAGAAAGTAAC 9598 ||||||||||||||||| ||||||||||||| || | |||||||||||| ||||| Sbjct 17739977 AACACTGCAGTAGTCAGTATGAAAGCTTGCAGAATAATGAACACATCATAGAAGGTAAC 17740035 Score = 141 bits (156), Expect = 1e-28 Identities = 162/217 (75%), Gaps = 3/217 (1%) Strand=Plus/Plus Query 9218 TTTTAAACTTTATTTCTTATTAGATACTTCCAAAAGCTGTAACAGATGCAAGAACAGATT 9277 |||||| ||| || |||||| | |||| | || | || ||| |||| ||| ||||| Sbjct 17729581 TTTTAA---TTACTTTTTATTAATTGCTTCTAGAAACCTTAGCAGGTGCAGGAATAGATT 17729637 Query 9278 GATGATATCCAAGTAGAAATTGATAGAGGCTAACACATAGTCTTCAGGCGAGAGCTTATG 9337 ||| ||||||||||||| | |||| | || |||||||| |||||||| || || || || Sbjct 17729638 GATAATATCCAAGTAGAGACTGATGGCAGCCAACACATACTCTTCAGGGGACAGTTTGTG 17729697 Query 9338 TATTAGTGAGTGCGTGTCATAGATAATGAATCCGCAGAATACAAGGGCCCCAAAAGCAGA 9397 || | || ||| || |||||||| |||||||| ||||| | ||||| || ||||| Sbjct 17729698 CATCAATGCGTGTGTATCATAGATGATGAATCCACAGAAAAGGAGGGCTCCTGCAGCAGC 17729757 Query 9398 CAGGACCAGCTCCACTGTTTCACTTTGCACAAATATC 9434 | ||||| |||||||| ||||| | | ||| ||| Sbjct 17729758 AAAGACCAATTCCACTGTCTCACTATAAAAAAAGATC 17729794 Score = 91.5 bits (100), Expect = 2e-13 Identities = 84/104 (81%), Gaps = 3/104 (3%) Strand=Plus/Plus Query 9847 CCATTCGTATGTGCACACTGGCAGACGCCACCGAGCTGCCATAGTTGAAGTCGTCCTCGA 9906 |||| || |||||||| ||||| || ||||| ||||||| ||||||||||| ||||||| Sbjct 17752046 CCATCCGGATGTGCACGCTGGCTGAGGCCACGCAGCTGCCGTAGTTGAAGTCATCCTCGA 17752105 Query 9907 TGGAGGAGCACGCGTA--GAGGCTC-GGCATGGCCATGGCGGCG 9947 |||||| ||||| ||| | || || || |||||||| || || Sbjct 17752106 TGGAGGTGCACGGGTAGCGGGGGTCAGGGCTGGCCATGTCGCCG 17752149 >seq3 Length=68754498 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65181 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 65240 || ||||||||||| ||||| ||||| ||||| || || |||||||| || ||||| | Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064 Query 65241 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 65300 ||||||||||| |||| || ||||||||||| ||||||||||| || || | | |||| Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124 Query 65301 CTATTTCTAAGACCGTA 65317 |||||||| | ||| || Sbjct 19114125 CTATTTCTGATACCATA 19114141 Score = 86.0 bits (94), Expect = 8e-12 Identities = 113/154 (73%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 66056 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCT 66115 || |||||||||||| |||||||| |||||||| || || | || | ||| | || | Sbjct 19125208 CTCCACTCGTTTCATGAAGAGATCTGGAATCCACAGGGCAAAGAAAAGATCCCGGGCACG 19125267 Query 66116 ATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCATAATGCC 66174 ||||| || || ||||| ||||| |||||| || || ||| | | || || | |||| Sbjct 19125268 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCTAAGTGCC 19125326 Query 66175 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 66208 | || |||| ||| || || | |||||||||| Sbjct 19125327 AAGGCTCCAGGTAAATAGCAAATGCTCCAGGCCG 19125360 >seq175 Length=2612143 Score = 118 bits (130), Expect = 1e-21 Identities = 262/393 (67%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 36347 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 36406 |||||||| || || || || ||| | ||| ||| || || | ||||| | | | | | Sbjct 1473349 GCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTAAATAAAAACTCT 1473290 Query 36407 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 36466 | | || |||| | | || | ||| |||| | || || || || || ||| Sbjct 1473289 CTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATCTCTGAGTGAGCA 1473230 Query 36467 TTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 36526 || || ||| || | ||| || |||||||| |||||| | || || || || Sbjct 1473229 TTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACGTGCACGTC---- 1473174 Query 36527 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 36586 | || || ||| | ||||||||||| || ||| | || |||| ||||||||| || || Sbjct 1473173 CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCAAAAAAGGCTAAG 1473114 Query 36587 ACATGTTTTATAAAATATTTTTCGTTTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 36646 | || ||||||| || | | |||| | || ||||| | | || ||| || Sbjct 1473113 ATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAAGGGAGATCCTTT 1473054 Query 36647 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 36706 |||| || | || || ||||||| || |||| || || | |||||||| ||||| Sbjct 1473053 GATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTATACATCTTCCAA 1472994 Query 36707 ATGTCATGATATTGAATTGGAAAAATAACAAAT 36739 || ||| | || || ||||||||||| |||||| Sbjct 1472993 ATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961 >seq83 Length=10591344 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| |||| |||||| | || |||||||| ||||| || ||||| || || || || | Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277 Query 36300 C 36300 | Sbjct 7356278 C 7356278 >seq56 Length=15139244 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 36180 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 36239 |||| ||||| || || | || ||||||||||||||||||||||| || || | ||| | Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221 Query 36240 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 36299 | ||||| ||||||| ||||| || || || ||||| | ||||| || || ||||||| Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161 Query 36300 C 36300 | Sbjct 9265160 C 9265160 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658083140410320