Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq19 172 5e-38 seq15 154 1e-32 seq34 111 1e-19 seq4 102 7e-17 >seq19 Length=34640225 Score = 172 bits (190), Expect = 5e-38 Identities = 409/610 (67%), Gaps = 10/610 (2%) Strand=Plus/Minus Query 20969 GTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGC 21028 |||||||||||| || ||||||| ||| | | ||| ||| || || || ||||| Sbjct 4394423 GTGCACAAAGTCACCT----TCAGGCCTGTGGTGGGTGCGCTCATGTAGGTGAGCAGGGC 4394368 Query 21029 GTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTG 21088 |||||||||||||| || | | || ||||||||||| | ||||||||||||||||| Sbjct 4394367 ATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTG 4394308 Query 21089 GCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGC 21148 ||||||| ||||||| |||| || | | | || | | || | ||||| || || Sbjct 4394307 GCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAGAGGGCATGGCCGGGAGGCAGCGC 4394248 Query 21149 CATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCG 21208 |||| | | ||||| |||||||| |||||||| ||| | | |||| || Sbjct 4394247 CATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTGATTCTTCTGTCGTCAGGGTT 4394188 Query 21209 CCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGC 21268 | || || ||| | || | ||| |||||||| || || ||| || | | Sbjct 4394187 GGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACTCCTTGTCCCGAGTCATCTGA 4394128 Query 21269 GTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAG 21328 | | ||| ||| |||| ||||| ||||||||||| || ||||| || |||| Sbjct 4394127 ATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGGAAACCATACACTGGGCCCAA 4394068 Query 21329 ATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCG 21387 | || || | || | ||| || || | | ||||| | ||||||| | | Sbjct 4394067 GACCCCTTCTTGTCGTGCAGAGAATTCC-AAGCTGTCGAAAAAATCTTGGGACCCATTAG 4394009 Query 21388 CGTCCCAAATTTTTAC-GCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATA 21446 | ||||| || || || ||| || ||||||| ||| | ||||| ||| || | Sbjct 4394008 CATCCCAGATCTTCACTGCCTTGG-ATGACAGTT-TTTGGCATTTGTGGATCCCTTGGT- 4393952 Query 21447 AACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGA 21506 | |||||||| |||||||| |||||| |||| ||||| | |||| || | |||||| Sbjct 4393951 AGCCACAGCAGCTCCTCCAAAACGCCCTTCCAGAACACGCGTTTGAATGTGAGTAGAGGA 4393892 Query 21507 AACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCC 21566 || ||| | | |||| | || || ||||| | |||||| ||| ||||| |||| Sbjct 4393891 AATTCGGCTCGGAGGCTGTAGCGCGCCTGCATGGTGAACACCGACTGCGTGCCGGTGCCC 4393832 Query 21567 GTCCTGTCCT 21576 | | ||||| Sbjct 4393831 GCGCGGTCCT 4393822 >seq15 Length=38784467 Score = 154 bits (170), Expect = 1e-32 Identities = 139/175 (79%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048 ||||||| |||||||| ||||||| || || || ||||| |||||||||||||| || | Sbjct 20806125 TCAGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGG 20806184 Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108 | || || ||||||||||| | ||||||||||||||||||||||||| |||||| Sbjct 20806185 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCA 20806244 Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163 ||||||| ||||| |||| | || || ||||| || |||||| | | ||||| Sbjct 20806245 CCACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCAGAGGAAGGTC 20806299 >seq34 Length=25388739 Score = 111 bits (122), Expect = 1e-19 Identities = 185/264 (70%), Gaps = 5/264 (2%) Strand=Plus/Minus Query 2982 TTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATAT 3041 |||| || ||||| || ||||| || ||||| || | |||||| || | || ||| Sbjct 338320 TTCTGGCAAGAAAATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTGTAT 338261 Query 3042 TAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCA 3101 ||||||||| | | || || | ||| ||||| ||||| ||||| ||| | | |||| Sbjct 338260 TAATTCTGTCCTTTAAGGGTCGATCCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCA 338201 Query 3102 TAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACA 3161 | || |||| ||||| || |||| | || || | || | |||||| |||| |||||| Sbjct 338200 TGATCACCAGATTCTGTTTACCTTCCACTGAAGAGGTTG-TGTCATTCTCTGGAAATACT 338142 Query 3162 TCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAATTCCTAATTGTT 3221 | | ||||| || || ||||| |||| | |||||||| ||||| || | |||| Sbjct 338141 TGAACTCGTTCCTGAGCGGGGGCCAGGGCAGTTCCCCGTTTTTGCCAATGCCCA--TGTT 338084 Query 3222 C--ATCAACTGCAACGATGCAGTT 3243 | || ||||||||||| || Sbjct 338083 CTGGGACACGGCAACGATGCAATT 338060 >seq4 Length=53591480 Score = 102 bits (112), Expect = 7e-17 Identities = 139/193 (72%), Gaps = 1/193 (1%) Strand=Plus/Minus Query 2982 TTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATAT 3041 |||| || ||||| || ||||| || ||||| || | |||||| || | || |||| Sbjct 52663382 TTCTGGCAAGAAAATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTATAT 52663323 Query 3042 TAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCA 3101 ||||||||| | | || || ||||| ||||| ||||| ||||| ||| | | |||| Sbjct 52663322 TAATTCTGTCCTTGAAGGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCA 52663263 Query 3102 TAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACA 3161 | || |||| ||||| || |||| | || || | || | |||||| |||| |||||| Sbjct 52663262 TGATTACCAGATTCTGTTTACCTTCCACTGAAGAGGT-GTGGTCATTCTCTGGAAATACT 52663204 Query 3162 TCATTTCGTTTCT 3174 | | ||||| || Sbjct 52663203 TGAGCTCGTTCCT 52663191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427719183059040