Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_003401.1
Length=133719
Score E
Sequences producing significant alignments: (Bits) Value
seq19 172 5e-38
seq15 154 1e-32
seq34 111 1e-19
seq4 102 7e-17
>seq19
Length=34640225
Score = 172 bits (190), Expect = 5e-38
Identities = 409/610 (67%), Gaps = 10/610 (2%)
Strand=Plus/Minus
Query 20969 GTGCACAAAGTCTCCCGGGGTCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGC 21028
|||||||||||| || ||||||| ||| | | ||| ||| || || || |||||
Sbjct 4394423 GTGCACAAAGTCACCT----TCAGGCCTGTGGTGGGTGCGCTCATGTAGGTGAGCAGGGC 4394368
Query 21029 GTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTG 21088
|||||||||||||| || | | || ||||||||||| | |||||||||||||||||
Sbjct 4394367 ATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTG 4394308
Query 21089 GCAGGACAGCTCCCCCCGAGCCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGC 21148
||||||| ||||||| |||| || | | | || | | || | ||||| || ||
Sbjct 4394307 GCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAGAGGGCATGGCCGGGAGGCAGCGC 4394248
Query 21149 CATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGATGCGCCGATCGTGGGGCCG 21208
|||| | | ||||| |||||||| |||||||| ||| | | |||| ||
Sbjct 4394247 CATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTGATTCTTCTGTCGTCAGGGTT 4394188
Query 21209 CCTGTTAATTAGATCCACCACGTAACGCAGCTGGTCCACCCCCTGACCCTCGTAGTTGGC 21268
| || || ||| | || | ||| |||||||| || || ||| || | |
Sbjct 4394187 GGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACTCCTTGTCCCGAGTCATCTGA 4394128
Query 21269 GTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACTGGAACCCGTACACCGGCCCCAG 21328
| | ||| ||| |||| ||||| ||||||||||| || ||||| || ||||
Sbjct 4394127 ATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGGAAACCATACACTGGGCCCAA 4394068
Query 21329 ATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCG-CCAAAAAGGCGCGGGACCCGTGCG 21387
| || || | || | ||| || || | | ||||| | ||||||| | |
Sbjct 4394067 GACCCCTTCTTGTCGTGCAGAGAATTCC-AAGCTGTCGAAAAAATCTTGGGACCCATTAG 4394009
Query 21388 CGTCCCAAATTTTTAC-GCCGCGGCGCGACAGTTCGGTGGAGTCGGTGGAGCCCCTGATA 21446
| ||||| || || || ||| || ||||||| ||| | ||||| ||| || |
Sbjct 4394008 CATCCCAGATCTTCACTGCCTTGG-ATGACAGTT-TTTGGCATTTGTGGATCCCTTGGT- 4393952
Query 21447 AACCACAGCAACTCCTCCACGACGCCCCTCCAAAACACCCTTTTGGTGGTTAACAGAGGA 21506
| |||||||| |||||||| |||||| |||| ||||| | |||| || | ||||||
Sbjct 4393951 AGCCACAGCAGCTCCTCCAAAACGCCCTTCCAGAACACGCGTTTGAATGTGAGTAGAGGA 4393892
Query 21507 AACTCGTCCCTGAGGTTATATCGGGCCTGAAGCCCGAACACGGACCTGGTGCCCACGCCC 21566
|| ||| | | |||| | || || ||||| | |||||| ||| ||||| ||||
Sbjct 4393891 AATTCGGCTCGGAGGCTGTAGCGCGCCTGCATGGTGAACACCGACTGCGTGCCGGTGCCC 4393832
Query 21567 GTCCTGTCCT 21576
| | |||||
Sbjct 4393831 GCGCGGTCCT 4393822
>seq15
Length=38784467
Score = 154 bits (170), Expect = 1e-32
Identities = 139/175 (79%), Gaps = 0/175 (0%)
Strand=Plus/Plus
Query 20989 TCAGGCCCGTGACGTGAGCGATCAGATACGTCAGGAGGGCGTAGCTGGCGATGTTAAACG 21048
||||||| |||||||| ||||||| || || || ||||| |||||||||||||| || |
Sbjct 20806125 TCAGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGG 20806184
Query 21049 GGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCAGGACAGCTCCCCCCGAG 21108
| || || ||||||||||| | ||||||||||||||||||||||||| ||||||
Sbjct 20806185 GCACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCA 20806244
Query 21109 CCACGTAAAACTGACACAAAACGTGACAAGGAGGGAGAGCCATCCGCGCGAGGTC 21163
||||||| ||||| |||| | || || ||||| || |||||| | | |||||
Sbjct 20806245 CCACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCAGAGGAAGGTC 20806299
>seq34
Length=25388739
Score = 111 bits (122), Expect = 1e-19
Identities = 185/264 (70%), Gaps = 5/264 (2%)
Strand=Plus/Minus
Query 2982 TTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATAT 3041
|||| || ||||| || ||||| || ||||| || | |||||| || | || |||
Sbjct 338320 TTCTGGCAAGAAAATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTGTAT 338261
Query 3042 TAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCA 3101
||||||||| | | || || | ||| ||||| ||||| ||||| ||| | | ||||
Sbjct 338260 TAATTCTGTCCTTTAAGGGTCGATCCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCA 338201
Query 3102 TAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACA 3161
| || |||| ||||| || |||| | || || | || | |||||| |||| ||||||
Sbjct 338200 TGATCACCAGATTCTGTTTACCTTCCACTGAAGAGGTTG-TGTCATTCTCTGGAAATACT 338142
Query 3162 TCATTTCGTTTCTAAGGTACGGCCAAGGCATTGTTCCGTTTTTACCAATTCCTAATTGTT 3221
| | ||||| || || ||||| |||| | |||||||| ||||| || | ||||
Sbjct 338141 TGAACTCGTTCCTGAGCGGGGGCCAGGGCAGTTCCCCGTTTTTGCCAATGCCCA--TGTT 338084
Query 3222 C--ATCAACTGCAACGATGCAGTT 3243
| || ||||||||||| ||
Sbjct 338083 CTGGGACACGGCAACGATGCAATT 338060
>seq4
Length=53591480
Score = 102 bits (112), Expect = 7e-17
Identities = 139/193 (72%), Gaps = 1/193 (1%)
Strand=Plus/Minus
Query 2982 TTCTCGCTAGAAAGTGTGCTCCGTGCGGTGGTTCACGTAATTCTCTGCTCAAAATAATAT 3041
|||| || ||||| || ||||| || ||||| || | |||||| || | || ||||
Sbjct 52663382 TTCTGGCAAGAAAATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTATAT 52663323
Query 3042 TAATTCTGTTCACCAGAGGGCGCTTCTTTTCAGGGATGGAAAACCATGTTCTTTTCCCCA 3101
||||||||| | | || || ||||| ||||| ||||| ||||| ||| | | ||||
Sbjct 52663322 TAATTCTGTCCTTGAAGGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCA 52663263
Query 3102 TAATAACCACATTCTTTTCACCTACAACCGATGGCGTAGACGTCATTTTCTGAAAATACA 3161
| || |||| ||||| || |||| | || || | || | |||||| |||| ||||||
Sbjct 52663262 TGATTACCAGATTCTGTTTACCTTCCACTGAAGAGGT-GTGGTCATTCTCTGGAAATACT 52663204
Query 3162 TCATTTCGTTTCT 3174
| | ||||| ||
Sbjct 52663203 TGAGCTCGTTCCT 52663191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 427719183059040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |