Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_003494.1
Length=111362
Score E
Sequences producing significant alignments: (Bits) Value
seq6 107 1e-18
seq56 96.9 2e-15
seq7443 84.2 2e-11
>seq6
Length=52350410
Score = 107 bits (118), Expect = 1e-18
Identities = 125/169 (74%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 22754 TTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGA 22813
|||| ||||| ||||| |||| |||||||| || ||||| | | ||||||||| | ||
Sbjct 1187012 TTGCTGCTGTGGAAGGAATCATCTTTTCTGGTTCTTTTGCACCAACATTCTGGCTCAGGA 1187071
Query 22814 AACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTC 22873
||| || ||||| || | | |||||||| ||| | ||||| | || || ||||
Sbjct 1187072 AACAGGGACTGATGCCTGGCCTCACATTTTCCAATGAGCTTATTAGTCAAGATGAGGGTC 1187131
Query 22874 TACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922
|||||||||| ||||| || || |||| | ||| ||| | |||||||
Sbjct 1187132 TACACTGTGATTTTGCCTGCCTGATGTTCAAGCACTTGGTACACAAACC 1187180
>seq56
Length=15139244
Score = 96.9 bits (106), Expect = 2e-15
Identities = 94/121 (78%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807
|||||||||| ||||| ||||| ||| | || || ||||| ||||| |||||||||||||
Sbjct 9265158 TGGCCTTTGCTGCTGTGGAAGGGGTCTTCTTCTCAGGGTCGTTTGCTGCCATATTCTGGC 9265217
Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867
| ||||| | ||||||||| || | |||||||||| ||| | || ||| | || |
Sbjct 9265218 TAAAGAAGAGAGGGCTCATGCCCGGACTCACGTTTTCCAATGAGCTCATCAGCAGAGATG 9265277
Query 22868 A 22868
|
Sbjct 9265278 A 9265278
>seq7443
Length=1322
Score = 84.2 bits (92), Expect = 2e-11
Identities = 127/178 (71%), Gaps = 2/178 (1%)
Strand=Plus/Plus
Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809
|| ||| | ||||| ||| | || | |||||| | || ||||| | |||||||||||
Sbjct 940 GCTTTTCCTGCTGTGGAATGAATCTTCTTTTCTAGTTCCTTTGCATCAATATTCTGGCTC 999
Query 22810 AAGAAACGTTCGCTCATG-CCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868
|||||| | || ||| || | | | |||||||| ||| | ||||||| || ||
Sbjct 1000 AAGAAATGGAGACTGATGCCCCTGCCTCACATTTTCCAATGAGCTTATTAGCCAAGATGA 1059
Query 22869 AGGTCTAC-ACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTG 22925
||| ||| ||||||| ||||| ||| | | || | ||| ||||| ||||||| ||
Sbjct 1060 GGGTTTACAACTGTGATTTTGCCTGTCAGATATTCAAGCACTTGGCACACAAACCATG 1117
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 356186285275894
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |