Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq6 107 1e-18 seq56 96.9 2e-15 seq7443 84.2 2e-11 >seq6 Length=52350410 Score = 107 bits (118), Expect = 1e-18 Identities = 125/169 (74%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 22754 TTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTGAAGA 22813 |||| ||||| ||||| |||| |||||||| || ||||| | | ||||||||| | || Sbjct 1187012 TTGCTGCTGTGGAAGGAATCATCTTTTCTGGTTCTTTTGCACCAACATTCTGGCTCAGGA 1187071 Query 22814 AACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGAAGGTC 22873 ||| || ||||| || | | |||||||| ||| | ||||| | || || |||| Sbjct 1187072 AACAGGGACTGATGCCTGGCCTCACATTTTCCAATGAGCTTATTAGTCAAGATGAGGGTC 1187131 Query 22874 TACACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACC 22922 |||||||||| ||||| || || |||| | ||| ||| | ||||||| Sbjct 1187132 TACACTGTGATTTTGCCTGCCTGATGTTCAAGCACTTGGTACACAAACC 1187180 >seq56 Length=15139244 Score = 96.9 bits (106), Expect = 2e-15 Identities = 94/121 (78%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 22748 TGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGC 22807 |||||||||| ||||| ||||| ||| | || || ||||| ||||| ||||||||||||| Sbjct 9265158 TGGCCTTTGCTGCTGTGGAAGGGGTCTTCTTCTCAGGGTCGTTTGCTGCCATATTCTGGC 9265217 Query 22808 TGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACG 22867 | ||||| | ||||||||| || | |||||||||| ||| | || ||| | || | Sbjct 9265218 TAAAGAAGAGAGGGCTCATGCCCGGACTCACGTTTTCCAATGAGCTCATCAGCAGAGATG 9265277 Query 22868 A 22868 | Sbjct 9265278 A 9265278 >seq7443 Length=1322 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/178 (71%), Gaps = 2/178 (1%) Strand=Plus/Plus Query 22750 GCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATTTGCGGCCATATTCTGGCTG 22809 || ||| | ||||| ||| | || | |||||| | || ||||| | ||||||||||| Sbjct 940 GCTTTTCCTGCTGTGGAATGAATCTTCTTTTCTAGTTCCTTTGCATCAATATTCTGGCTC 999 Query 22810 AAGAAACGTTCGCTCATG-CCAGGGTTGGCGTTTTCCAACGAGTTGATTAGCCGTGACGA 22868 |||||| | || ||| || | | | |||||||| ||| | ||||||| || || Sbjct 1000 AAGAAATGGAGACTGATGCCCCTGCCTCACATTTTCCAATGAGCTTATTAGCCAAGATGA 1059 Query 22869 AGGTCTAC-ACTGTGACTTTGCTTGTATGCTGTTTAGGCAAATGGCAAACAAACCGTG 22925 ||| ||| ||||||| ||||| ||| | | || | ||| ||||| ||||||| || Sbjct 1060 GGGTTTACAACTGTGATTTTGCCTGTCAGATATTCAAGCACTTGGCACACAAACCATG 1117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356186285275894