Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq116 102 8e-17
>seq116
Length=7179089
Score = 102 bits (112), Expect = 8e-17
Identities = 149/210 (71%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627
|| ||||| || || ||||| || || || |||| ||||| ||||| || ||
Sbjct 4848394 GTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAGCTGCTTGCCG 4848453
Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687
||| ||||||| | ||||| || || || ||||| |||||||| ||| ||| ||
Sbjct 4848454 GCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTTTGCCTTG 4848513
Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747
| | || | ||||| ||||||||||||| | ||| | ||||||||||||| ||
Sbjct 4848514 ACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTC 4848573
Query 139748 TTTACGAATATTTGCATAGCTTATGTTTTA 139777
|| || || || ||||| ||| |||||||
Sbjct 4848574 TTCACAAAGATCTGCAT--CTTCTGTTTTA 4848601
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 495996423681600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |