Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq57 260 2e-64 seq6 210 3e-49 seq7443 145 1e-29 seq175 122 1e-22 seq56 120 4e-22 seq83 116 5e-21 seq3 116 5e-21 seq63 93.3 6e-14 seq171 87.8 3e-12 >seq57 Length=15126812 Score = 260 bits (288), Expect = 2e-64 Identities = 608/904 (67%), Gaps = 36/904 (4%) Strand=Plus/Minus Query 49654 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 49713 ||||| |||||||| | |||| ||||| || | || || | || ||||| |||||| Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261 Query 49714 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 49773 || | ||| ||| | |||||||| ||||| || || || | |||| || ||||| Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201 Query 49774 CCCAATTCAGAAATCAATCTATCCGCGACAAATTCTATATATGTTTTCATCATTTCA--- 49830 |||| ||| || | || || || |||||||| || | | | | ||||| | Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144 Query 49831 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGAT 49890 ||||||||||| || | || || || | ||| | || || || || | ||| || Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084 Query 49891 ACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATGCAATAAA---TG 49946 || |||| | | ||| || | | || |||| ||| | ||| || Sbjct 10750083 ACAGCAT---TGACAATT-ATTTCCTTGACTCACTACTCTAATGGTTTGTATACCAGGTG 10750028 Query 49947 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTT 50006 || |||| || || | ||||| || || | |||||| |||| |||||| || || | Sbjct 10750027 CTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACT 10749969 Query 50007 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 50066 |||||| ||||| || ||||| || || | || || ||||||||||| || ||||| || Sbjct 10749968 GGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGA 10749909 Query 50067 CCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGC 50126 |||||| |||||| ||| | || ||||| || |||| |||||||| | || Sbjct 10749908 ACCAGAA---AAGATTTCTTTCGCAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGC 10749852 Query 50127 GCTGTCATGTATCCACTTTTGAGCCCA-------ATCGGCCTTCTTTTTTACACAAGGCA 50179 || | ||||||| | | | || || |||||| || | |||||||| Sbjct 10749851 -CT---CTTTATCCACAATCCAACACAGGGTCACGTCTGCCTTC---TTCATACAAGGCA 10749799 Query 50180 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGA 50239 || |||| |||||||| ||||| ||| |||| || |||||| ||| | || | Sbjct 10749798 TCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAA 10749739 Query 50240 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 50299 | | ||||| ||||| | ||||| ||||| || ||||| || || || || ||||||| Sbjct 10749738 TAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAAC 10749679 Query 50300 ATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTA 50359 | | || || ||||| || |||||| | |||||| || | | |||||||| |||| Sbjct 10749678 AGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTA 10749619 Query 50360 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA--ATGTTTTTCGTTGGG 50417 | || |||||||| ||||| || |||| || | |||||| || |||||| | || Sbjct 10749618 TACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGG 10749559 Query 50418 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 50477 | || | ||| | | | || || || | |||||| | || ||||||| || Sbjct 10749558 CTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAA 10749499 Query 50478 TGATGCCTCTGCCTTT-TTATACATATTCCAGATGTCATGATATTGGATTGGGAAAATAA 50536 || ||| ||| |||| || ||||| | |||||| ||||| ||||| || || || |||| Sbjct 10749498 GGAGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440 Query 50537 CAAA 50540 |||| Sbjct 10749439 CAAA 10749436 >seq6 Length=52350410 Score = 210 bits (232), Expect = 3e-49 Identities = 338/482 (70%), Gaps = 14/482 (3%) Strand=Plus/Minus Query 49942 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 50001 || || || ||||||| || || ||||| ||||| |||||||| ||| |||||| || Sbjct 1187168 AAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGC 1187109 Query 50002 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 50061 || |||||||| ||||| || ||||| || || | || | ||||| ||| | | ||| Sbjct 1187108 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCA 1187049 Query 50062 AATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAA 50121 || || |||||||||| ||||||||| || || |||| || ||| ||||||| Sbjct 1187048 AAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCAT-- 1186991 Query 50122 CTGG-CGC-----TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAA 50175 ||| ||| |||| ||||| |||| || |||| ||| ||| | Sbjct 1186990 -TGGTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCTTC---ACAGGA 1186935 Query 50176 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTA 50235 |||||||||| |||||||| | || | | |||| || |||||||| | |||| Sbjct 1186934 AGCATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTG 1186875 Query 50236 TCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAG 50295 || | | ||||| ||||| || ||| | |||||||||||||| | || || || | Sbjct 1186874 TCAGTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATG 1186815 Query 50296 AAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTC 50355 ||||| | ||| || ||||| || |||||| | ||||| || || || ||||||||| Sbjct 1186814 AAACAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTC 1186755 Query 50356 ACTATTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTG 50415 ||| | | |||||||| |||||||| |||| || || | |||| ||||||| || Sbjct 1186754 ACTGTGTCATCACTGGCAGCAAAAAAAGCCAGGACGTGAGATGTAAA--GTTTTTCCTTA 1186697 Query 50416 GG 50417 || Sbjct 1186696 GG 1186695 >seq7443 Length=1322 Score = 145 bits (160), Expect = 1e-29 Identities = 269/390 (69%), Gaps = 11/390 (3%) Strand=Plus/Minus Query 49942 AAATGTTTAAACATCAAACATGCGAAATCGCAGT-GCAGACCCTCGTCTCTACTAATTAG 50000 || || || || ||| ||| || ||||| |||| | | |||||| ||| ||||| || Sbjct 1102 AAGTGCTTGAATATCTGACAGGCAAAATCACAGTTGTAAACCCTCATCTTGGCTAATAAG 1043 Query 50001 TTCGTTGGAAAACGTGAGTCCGGG-CATTAGGCCACGCTTTTTAAGCCAAAATATGGACG 50059 || |||||||| ||||| | ||| ||| || | | || || ||||| ||||| || | Sbjct 1042 CTCATTGGAAAATGTGAGGCAGGGGCATCAGTCTCCATTTCTTGAGCCAGAATATTGATG 983 Query 50060 CAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCAT 50119 |||| || | |||||||||||||| ||| || || | ||| || ||| | ||| ||| Sbjct 982 CAAAGGAACTAGAAAAGAAGATTCATTCCACAGCAGGAAAAGCTACAGTACATTCTGCAT 923 Query 50120 AACTGG---CGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA-A 50175 | | | | |||| |||| | | ||| || |||||||| |||| | Sbjct 922 AGGTAGCCTCTTTGTCCCCATTCCAATGCAAGGTCCAGTCTGCCTTCTT-----CACATA 868 Query 50176 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTA 50235 ||||| ||| | || | ||| ||||| | | |||| || ||||||| |||||| Sbjct 867 GGCATTGTTGCAATAGTATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAGTATAAGTT 808 Query 50236 TCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAG 50295 || || | ||||| ||||| || ||||| |||||||| |||||||| | | || ||| Sbjct 807 TCAATAAGGAGACTGTACATCTCAGAATGTATGTTTTCCATGGCCATTTAGAGCCCATAG 748 Query 50296 AAACATCTAGCCTCGGTAATCTGCACTTCT 50325 |||| | ||| ||||| || |||||| Sbjct 747 AAACTGTGGGGCTCTGTAATTTGAACTTCT 718 >seq175 Length=2612143 Score = 122 bits (134), Expect = 1e-22 Identities = 263/393 (67%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 50149 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 50208 |||||||| || || || || ||| | ||| ||||| || | ||||| | | | | | Sbjct 1473349 GCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTAAATAAAAACTCT 1473290 Query 50209 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 50268 | | || |||| | | |||| ||| |||| | || || || || || ||| Sbjct 1473289 CTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATCTCTGAGTGAGCA 1473230 Query 50269 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTA 50328 || || ||| |||| ||| || |||||||| |||||| | || ||||| || Sbjct 1473229 TTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACGTGCACGTC---- 1473174 Query 50329 CAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 50388 | || || || | ||||||||||| || ||| | || |||| ||||||||| || || Sbjct 1473173 CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCAAAAAAGGCTAAG 1473114 Query 50389 ACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCATTGATATCTTTA 50448 | || ||||||| || | | ||| | || ||||| | | || ||| || Sbjct 1473113 ATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAAGGGAGATCCTTT 1473054 Query 50449 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 50508 |||| || | || || ||||||| || |||| || || | |||||||| ||||| Sbjct 1473053 GATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTATACATCTTCCAA 1472994 Query 50509 ATGTCATGATATTGGATTGGGAAAATAACAAAT 50541 || ||| | || |||||||| ||||| |||||| Sbjct 1472993 ATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961 >seq56 Length=15139244 Score = 120 bits (132), Expect = 4e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| ||||| || || || || ||||||||||||||||||||||| || || | ||| | Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||||| ||||| ||||| || ||||||| ||||| || || ||||||| Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161 Query 50102 CAACAAGTCTCTCTCC 50117 | || | ||| || || Sbjct 9265160 CCACCACTCTTTCCCC 9265145 >seq83 Length=10591344 Score = 116 bits (128), Expect = 5e-21 Identities = 100/124 (81%), Gaps = 0/124 (0%) Strand=Plus/Plus Query 49982 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 50041 |||| |||| |||||| || || |||||||| ||||| || ||||| || || || || | Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217 Query 50042 TAAGCCAAAATATGGACGCAAATGACCCAGAAAAGAAGATTCCTTCTACTGCGGCAAAGG 50101 | ||||| ||||| || ||||| || |||||||||||||||||||| || || ||||| | Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277 Query 50102 CAAC 50105 | || Sbjct 7356278 CTAC 7356281 >seq3 Length=68754498 Score = 116 bits (128), Expect = 5e-21 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 79060 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACC 79119 || ||||||||||| ||||| ||||| ||||| || || |||||||| || ||||| | Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064 Query 79120 GATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAA 79179 || |||||||| |||| || ||||||||||| || || ||||| || || | | |||| Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124 Query 79180 CTATTTCTAAGACCGTA 79196 |||||||| | ||| || Sbjct 19114125 CTATTTCTGATACCATA 19114141 >seq63 Length=13740492 Score = 93.3 bits (102), Expect = 6e-14 Identities = 175/256 (68%), Gaps = 5/256 (2%) Strand=Plus/Minus Query 47704 CCAGTTGATCCAAACCCTTGAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCCTCC 47763 ||||| || ||||||||| | || | ||||| ||| || || ||||| || Sbjct 12332061 CCAGTGGAACCAAACCCTCCCGAACCCCGTTCTGTGTCATCCAGCACCTGAACTTCTTCT 12332002 Query 47764 AGTTCTGGATAATATATA--CGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTTA 47821 | ||||||||| | | | |||| | | || ||||| || || | ||| ||| |||| Sbjct 12332001 ATGTCTGGATAAAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGATCGCCCTGTTTTA 12331942 Query 47822 CATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCTT 47881 | | ||| | ||| ||| ||||| | | | || | ||||| |||||||||| Sbjct 12331941 CTTCAAACTTCTCTTTCCCAAAATTAAACAATACAAAACCAACATTTCCTCTATAATCTT 12331882 Query 47882 CGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGAG 47938 | ||||| |||||| |||||| |||||| | ||||| | || ||||| | |||| Sbjct 12331881 CATCTATAACACCAGCTCCTACATCAATGAAGTGTTTTACAGCCAAGCCAGAGCGTGGAG 12331822 Query 47939 CTATTCTACCATAGCA 47954 ||| ||| |||||||| Sbjct 12331821 CTACTCTTCCATAGCA 12331806 >seq171 Length=3042471 Score = 87.8 bits (96), Expect = 3e-12 Identities = 176/257 (68%), Gaps = 8/257 (3%) Strand=Plus/Plus Query 47703 TCCAGTTGATCCAAACCCTT--GAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCC 47760 |||||| || ||||| ||| |||| || || ||| ||| || ||| ||||| Sbjct 1173427 TCCAGTGGAACCAAAACCTCCCGAGCCCCGCTCAGTGTC--ATCCAGCACTTGAACTTCT 1173484 Query 47761 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 47820 || | |||||||||| | || |||| | | || ||||| || || | ||| ||| ||| Sbjct 1173485 TCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCAATCGCCCTGTTTT 1173544 Query 47821 ACATTGAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATCT 47880 || | ||| | ||| ||| ||||| | | || || | ||||| ||||||||| Sbjct 1173545 ACTTCAAACTTCTCTTTCCCAAAATTAAGCAATACAACACCAACATTTCCTCTATAATCT 1173604 Query 47881 TCGTCTATTACACCACCTCCTATATCAAT---GCCTTTTAGTGACAGTCCAGACCTAGGA 47937 || ||||| |||||| |||||| | | || | ||||| | || ||||| | ||| Sbjct 1173605 TCATCTATAACACCAGCTCCTACACCGATGAAGTGTTTTACAGCCAAGCCAGAGCGTGGA 1173664 Query 47938 GCTATTCTACCATAGCA 47954 ||| ||| ||| |||| Sbjct 1173665 ACTACTCTTCCA-AGCA 1173680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718170953832720