Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq57 196 5e-45 seq6 156 4e-33 seq83 86.0 6e-12 seq63 86.0 6e-12 seq175 84.2 2e-11 >seq57 Length=15126812 Score = 196 bits (216), Expect = 5e-45 Identities = 592/905 (65%), Gaps = 27/905 (3%) Strand=Plus/Minus Query 13562 GTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTT 13621 ||| || || || ||||| | || | |||| ||||| || ||| |||||||||| || Sbjct 10750324 GTTTGACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTT 10750265 Query 13622 ACCTTCCAGTGATATATTTTCCATAAAATCAAATGGATTTATTGACATAAACACTTTATC 13681 ||||| ||||| ||| | ||||| || |||||||| ||| | | || | || | Sbjct 10750264 TCCTTCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTT 10750205 Query 13682 ACAACCTAGTTCTAATAGTAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13741 | |||| | ||| | | | || || || | ||| ||||| | || ||||||| Sbjct 10750204 AAAACCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGTTCTGCTTCATTAAAGT 10750145 Query 13742 ACAATTCATACCTATTAGTTTTACAGGAATTATATTGGTTAAAAATTCTTTTTCTATAGA 13801 |||||||| || || | || ||||| | | || | || || | |||||| Sbjct 10750144 GCAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCT 10750085 Query 13802 CACAGCCTCTTTTATAATAATTGTAATAATCTCATTAG----AAGGAGGATATTTTAGAT 13857 ||||| | | | ||| ||| | | |||| || | || ||| || | Sbjct 10750084 GACAGCAT---TGACAATTATTTCCTTGA-CTCACTACTCTAATGGTTTGTATACCAGGT 10750029 Query 13858 GTTTAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGT 13917 | || || | | || | ||||||||| || | |||||||||| ||||||||| || Sbjct 10750028 GCTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCAC 10749970 Query 13918 TTGAAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATG 13977 | |||||||| | || ||||||| ||| |||| || | ||||||||||| ||||| | Sbjct 10749969 TGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAG 10749910 Query 13978 ACCCGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATG 14037 | || ||||||| | | | || |||||||| |||| | |||||||| | | | Sbjct 10749909 AACCAGAAAAGATTTCTTTCGCA---GCAGCAAAAGCTACAACATGTTCTCCATAGGTAG 10749853 Query 14038 CTTTTTTGTTCGATATCCATTTTCTAGCCCAT--TCAGAtttt--tttttAATAAAATCC 14093 | | ||| ||||| || | | || ||| | | || || ||| || | Sbjct 10749852 CCTCTTT-------ATCCACAATCCAACACAGGGTCACGTCTGCCTTCTTCATACAAGGC 10749800 Query 14094 ATTGTTTCAATAGCATTAAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCA 14153 || ||||||| ||||| || | | ||| | ||||| | | |||| | ||| Sbjct 10749799 ATCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCA 10749740 Query 14154 ATAAGTAAGCTATACATTTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAG 14213 ||||| | || ||||| |||| |||||||| ||||| || || || || ||||| || Sbjct 10749739 ATAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAA 10749680 Query 14214 CATCTAGCTTCCGACCATTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACT 14273 || | ||||| | ||| ||||| | ||||| || ||| |||||||| ||| Sbjct 10749679 CAGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACT 10749620 Query 14274 ATACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA--TTGCTCTTCAT 14331 ||||||||||| || ||||| || |||| | | |||||||| || |||||| Sbjct 10749619 ATACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAG 10749560 Query 14332 TGTTGAGTTTTTTCCAAT-CGGATAAATCCTTAGAAAGATCTACTTCATCAACTGTCCAA 14390 || || || ||| | | || | ||||| ||||||||||| | ||| ||||||| Sbjct 10749559 GCTTCAGGGCTTCCCAGTGCTGA-ACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAG 10749501 Query 14391 AAACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACT 14450 || || ||||| || ||||| ||| || || | ||| |||||||| | Sbjct 10749500 AAGGAGGCCCTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATA 10749441 Query 14451 ACAAA 14455 ||||| Sbjct 10749440 ACAAA 10749436 >seq6 Length=52350410 Score = 156 bits (172), Expect = 4e-33 Identities = 293/430 (68%), Gaps = 3/430 (1%) Strand=Plus/Minus Query 13872 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13931 || ||||||||||| || || ||||||||| ||||||||| || || |||||||| | Sbjct 1187150 CAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCATTGGAAAATGTGAGG 1187091 Query 13932 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGACCCGGAAAAGAAT 13991 || ||||||| ||| |||| | | ||| ||| ||| ||||| || || ||||||| Sbjct 1187090 CCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACCAGAAAAGATG 1187031 Query 13992 ATTCCCTCAACTGCAGCAAACGCTATTAATCGTTCTCCAAACGATGCTTTTTTGTTCGAT 14051 ||||| || || ||||||| |||| |||||||| | || | ||||| | Sbjct 1187030 ATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTGGTCGCCTCTTTGTCTGCA 1186971 Query 14052 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATTA 14111 ||||| |||| || | | || | | | ||| |||||||| ||||| Sbjct 1186970 ATCCAACGCAAGGCCCCGTC---TGCCTCCTTCACAGGAAGCATCGTTTCAATGGCATTG 1186914 Query 14112 AATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 14171 | | ||||| | ||||| | | | ||| | || ||| |||| | || ||||| Sbjct 1186913 ACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTAAGGAGACTGTACATC 1186854 Query 14172 TCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCAT 14231 ||||| |||||||||| || || | || || ||| || || | |||||| | | Sbjct 1186853 TCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGAGCTTCTGTAATT 1186794 Query 14232 TGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGCA 14291 || ||||| | ||||| || ||||| |||||||| ||| | ||||||| || ||| Sbjct 1186793 TGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCATCACTGGCAGCA 1186734 Query 14292 AAAAATGCCA 14301 ||||| |||| Sbjct 1186733 AAAAAAGCCA 1186724 >seq83 Length=10591344 Score = 86.0 bits (94), Expect = 6e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 13566 GAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAGAAGTTAGTTTTACCT 13625 || || || ||||| | ||||| || | ||||| || |||||||||||||| || ||| Sbjct 7355304 GACATCACTCCCATCCTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCT 7355363 Query 13626 TCCAGTGATATATTTTCCATAAAATCAAATGGATT 13660 |||||||| ||||| ||||| || |||||||| || Sbjct 7355364 TCCAGTGAAATATTCTCCATGAAGTCAAATGGGTT 7355398 >seq63 Length=13740492 Score = 86.0 bits (94), Expect = 6e-12 Identities = 126/176 (72%), Gaps = 2/176 (1%) Strand=Plus/Minus Query 11351 TTCAAAAATAATTTGAGCCACCCGATCGCC-TCTTTTAATATTAAATGTATTTTTACCAT 11409 |||| |||||| || || | ||||||||| | ||||| | | ||| | | ||| ||| Sbjct 12331979 TTCACAAATAAGCTGTGCAATCCGATCGCCCTGTTTTACT-TCAAACTTCTCTTTCCCAA 12331921 Query 11410 TATTAATAAATATAACTCCAATGTTACCCCTATAATCTTCATCTATAACTCCTCCTCCTA 11469 ||||| |||| || |||| || || |||||||||||||||||||| || |||||| Sbjct 12331920 AATTAAACAATACAAAACCAACATTTCCTCTATAATCTTCATCTATAACACCAGCTCCTA 12331861 Query 11470 TATCTATGCCATAATATAACGAAAGACCAGACCTTGGCGCTATTCGTCCATAACAT 11525 ||| ||| | | || | | ||||| | ||| |||| || |||||| ||| Sbjct 12331860 CATCAATGAAGTGTTTTACAGCCAAGCCAGAGCGTGGAGCTACTCTTCCATAGCAT 12331805 >seq175 Length=2612143 Score = 84.2 bits (92), Expect = 2e-11 Identities = 173/257 (67%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 14051 TATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCAATAGCATT 14110 |||||||| ||||| || | |||||| |||| | | || ||||||||| | || Sbjct 1473362 TATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTT 1473303 Query 14111 AAATAAATATTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACAT 14170 ||||||| | || ||| || | | | ||||| | ||| || |||||||| || || Sbjct 1473302 AAATAAAAACTCTCTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATAT 1473243 Query 14171 TTCAGAGTGTATGTTTTCCATAGCTATCTGAAAACCATAAAAGCATCTAGCTTCCGACCA 14230 || ||||| || ||||| |||| ||| ||||| || || ||| || || Sbjct 1473242 CTCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAAC 1473183 Query 14231 TTGTACTTCCGAGTAAAATCTTTCGGCCAAATTTTCATTAACTATACCATCACTAGCTGC 14290 || || ||| | | ||| ||||||||||||| || || |||| || | ||| Sbjct 1473182 GTGCACGTCCTAATGCGCTCTA----CCAAATTTTCATTTACAATTTCATCGCTGGTTGC 1473127 Query 14291 AAAAAATGCCAATATGT 14307 |||||| || || |||| Sbjct 1473126 AAAAAAGGCTAAGATGT 1473110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479662649053200