Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_004003.1 Length=149599 Score E Sequences producing significant alignments: (Bits) Value seq57 183 3e-41 seq6 156 4e-33 >seq57 Length=15126812 Score = 183 bits (202), Expect = 3e-41 Identities = 590/904 (65%), Gaps = 25/904 (3%) Strand=Plus/Minus Query 13350 GTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTT 13409 ||| || || || ||||| | || | |||| ||||| || ||| | |||||||| || Sbjct 10750324 GTTTGACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTT 10750265 Query 13410 ACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATC 13469 ||||| ||||| ||| | ||||| || || ||||| ||| | | || | || | Sbjct 10750264 TCCTTCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTT 10750205 Query 13470 ACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13529 | |||| | ||| | | | || || || | ||| ||||| | || ||||||| Sbjct 10750204 AAAACCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGTTCTGCTTCATTAAAGT 10750145 Query 13530 ACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGA 13589 |||||||| || || | || ||||| | | || | || || | |||||| Sbjct 10750144 GCAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCT 10750085 Query 13590 CACAGCCTCGTTTATAATAATCTTAA-TAATGTCATTAGAAGGAGGATATTTTAGATGTT 13648 ||||| | | || || ||| | | | | || | || ||| || || | Sbjct 10750084 GACAGCATTGACAATTATTTCCTTGACTCACTACTCTA-ATGGTTTGTATACCAGGTGCT 10750026 Query 13649 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13708 | || | | || | ||||||||| || | |||||||||| ||||||||| || | | Sbjct 10750025 TGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACTGG 10749967 Query 13709 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATC 13768 ||||||| | || ||||||| ||| |||| || | ||||||||||| || || || | Sbjct 10749966 AAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGAAC 10749907 Query 13769 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTT 13828 | ||||||| | | | || |||||||| |||| | |||||||| | | || | Sbjct 10749906 CAGAAAAGATTTCTTTCGCA---GCAGCAAAAGCTACAACATGTTCTCCATAGGTAGCCT 10749850 Query 13829 TTTTGTTTGATATCCATTTTCTAGCCCAT--TCAGAtttt--tttttAATAAAATCCATT 13884 ||| ||||| || | | || ||| | | || || ||| || ||| Sbjct 10749849 CTTT-------ATCCACAATCCAACACAGGGTCACGTCTGCCTTCTTCATACAAGGCATC 10749797 Query 13885 GTTTCGATTGCATTGAATAA-ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943 |||| || |||||||| | | || |||| ||||| | | |||| | ||||| Sbjct 10749796 CTTTCAATGGCATTGAAGAGGAAGTCCCTT-TCTTTGACATCTTTTGTGTAAATGTCAAT 10749738 Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003 ||| | || ||||| |||| |||||||| || || || || || || ||||| ||||| Sbjct 10749737 AAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAACA 10749678 Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063 | ||||||| ||| || || | ||||| || ||| ||||||||| || || Sbjct 10749677 GCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTAT 10749618 Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA--TTGCTCTTCATTG 14121 ||||||||| || ||||| || |||| | | |||||||| || |||||| Sbjct 10749617 ACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGGC 10749558 Query 14122 TTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAA 14179 || || || ||| | ||| || ||||| ||||||||||| | ||| ||||||| | Sbjct 10749557 TTCAGGGCTTCCCAGT--GCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGA 10749500 Query 14180 AACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTA 14239 | || ||||| || ||||| ||| || || | ||| |||||||| | | Sbjct 10749499 AGGAGGCCCTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440 Query 14240 CAAA 14243 |||| Sbjct 10749439 CAAA 10749436 >seq6 Length=52350410 Score = 156 bits (172), Expect = 4e-33 Identities = 293/430 (68%), Gaps = 3/430 (1%) Strand=Plus/Minus Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719 || ||||||||||| || || ||||||||| ||||||||| || || |||||||| | Sbjct 1187150 CAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCATTGGAAAATGTGAGG 1187091 Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779 || ||||||| ||| |||| | | ||| ||| ||| || || || || ||||||| Sbjct 1187090 CCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACCAGAAAAGATG 1187031 Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839 ||||| || || ||||||| |||| |||||||| | || | ||||| || Sbjct 1187030 ATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTGGTCGCCTCTTTGTCTGCA 1186971 Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899 ||||| |||| || | | || | | | ||| ||||| || |||||| Sbjct 1186970 ATCCAACGCAAGGCCCCGTC---TGCCTCCTTCACAGGAAGCATCGTTTCAATGGCATTG 1186914 Query 13900 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959 | | |||| | ||||| | | | ||| | || ||| |||| | || ||||| Sbjct 1186913 ACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTAAGGAGACTGTACATC 1186854 Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019 ||||| |||||||||| || || | || || ||| ||||| | |||||||| | Sbjct 1186853 TCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGAGCTTCTGTAATT 1186794 Query 14020 TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079 || || || | ||||| || |||||||||||||| || | ||||||| || ||| Sbjct 1186793 TGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCATCACTGGCAGCA 1186734 Query 14080 AAAAATGCCA 14089 ||||| |||| Sbjct 1186733 AAAAAAGCCA 1186724 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478523604240720