Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_004003.1
Length=149599
Score E
Sequences producing significant alignments: (Bits) Value
seq57 183 3e-41
seq6 156 4e-33
>seq57
Length=15126812
Score = 183 bits (202), Expect = 3e-41
Identities = 590/904 (65%), Gaps = 25/904 (3%)
Strand=Plus/Minus
Query 13350 GTTAGAAATAACGCCCATTTTTTGATATTCACTAACTCTTTTTTCAAAAAAGTTAGTTTT 13409
||| || || || ||||| | || | |||| ||||| || ||| | |||||||| ||
Sbjct 10750324 GTTTGACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTT 10750265
Query 13410 ACCTTCCAGTGATATATTTTCCATAAAATCGAATGGATTTGTTGACATAAACACTTTATC 13469
||||| ||||| ||| | ||||| || || ||||| ||| | | || | || |
Sbjct 10750264 TCCTTCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTT 10750205
Query 13470 ACAACCTAGTTCTAATAATAATCTATCAGCAATAAACTCAATATATTGAGACATTAAATC 13529
| |||| | ||| | | | || || || | ||| ||||| | || |||||||
Sbjct 10750204 AAAACCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGTTCTGCTTCATTAAAGT 10750145
Query 13530 ACAATTCATACCTATTAGTTTTACAGGAATTATATTAGTTAAAAATTCTTTTTCTATAGA 13589
|||||||| || || | || ||||| | | || | || || | ||||||
Sbjct 10750144 GCAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCT 10750085
Query 13590 CACAGCCTCGTTTATAATAATCTTAA-TAATGTCATTAGAAGGAGGATATTTTAGATGTT 13648
||||| | | || || ||| | | | | || | || ||| || || |
Sbjct 10750084 GACAGCATTGACAATTATTTCCTTGACTCACTACTCTA-ATGGTTTGTATACCAGGTGCT 10750026
Query 13649 TAAAAATTAAACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTG 13708
| || | | || | ||||||||| || | |||||||||| ||||||||| || | |
Sbjct 10750025 TGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACTGG 10749967
Query 13709 AAAATGTTAATCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATC 13768
||||||| | || ||||||| ||| |||| || | ||||||||||| || || || |
Sbjct 10749966 AAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGAAC 10749907
Query 13769 CGGAAAAGAATATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTT 13828
| ||||||| | | | || |||||||| |||| | |||||||| | | || |
Sbjct 10749906 CAGAAAAGATTTCTTTCGCA---GCAGCAAAAGCTACAACATGTTCTCCATAGGTAGCCT 10749850
Query 13829 TTTTGTTTGATATCCATTTTCTAGCCCAT--TCAGAtttt--tttttAATAAAATCCATT 13884
||| ||||| || | | || ||| | | || || ||| || |||
Sbjct 10749849 CTTT-------ATCCACAATCCAACACAGGGTCACGTCTGCCTTCTTCATACAAGGCATC 10749797
Query 13885 GTTTCGATTGCATTGAATAA-ATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAAT 13943
|||| || |||||||| | | || |||| ||||| | | |||| | |||||
Sbjct 10749796 CTTTCAATGGCATTGAAGAGGAAGTCCCTT-TCTTTGACATCTTTTGTGTAAATGTCAAT 10749738
Query 13944 AAGTAAGCTATACATTTCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACA 14003
||| | || ||||| |||| |||||||| || || || || || || ||||| |||||
Sbjct 10749737 AAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAACA 10749678
Query 14004 TCTAGCTTCTGACCATTGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAAT 14063
| ||||||| ||| || || | ||||| || ||| ||||||||| || ||
Sbjct 10749677 GCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTAT 10749618
Query 14064 ACCATCACTAGCTGCAAAAAATGCCAATATGTTTTTAATAAAGTA--TTGCTCTTCATTG 14121
||||||||| || ||||| || |||| | | |||||||| || ||||||
Sbjct 10749617 ACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGGC 10749558
Query 14122 TTGAGTTTTTTCCAATCGGCTAAA--TCCTTAGAAAGATCTACTTCATCAACTGTCCAAA 14179
|| || || ||| | ||| || ||||| ||||||||||| | ||| ||||||| |
Sbjct 10749557 TTCAGGGCTTCCCAGT--GCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGA 10749500
Query 14180 AACTAGCGACAGCTTTTTTATACATTACCCATATTTCTTTATATAATATAGGAAAAACTA 14239
| || ||||| || ||||| ||| || || | ||| |||||||| | |
Sbjct 10749499 AGGAGGCCCTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440
Query 14240 CAAA 14243
||||
Sbjct 10749439 CAAA 10749436
>seq6
Length=52350410
Score = 156 bits (172), Expect = 4e-33
Identities = 293/430 (68%), Gaps = 3/430 (1%)
Strand=Plus/Minus
Query 13660 CACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAAT 13719
|| ||||||||||| || || ||||||||| ||||||||| || || |||||||| |
Sbjct 1187150 CAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCATTGGAAAATGTGAGG 1187091
Query 13720 CCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCGAATGATCCGGAAAAGAAT 13779
|| ||||||| ||| |||| | | ||| ||| ||| || || || || |||||||
Sbjct 1187090 CCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACCAGAAAAGATG 1187031
Query 13780 ATTCCCTCAACTGCAGCAAACGCTATTAGTCGTTCTCCAAACGATGCTTTTTTGTTTGAT 13839
||||| || || ||||||| |||| |||||||| | || | ||||| ||
Sbjct 1187030 ATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTGGTCGCCTCTTTGTCTGCA 1186971
Query 13840 ATCCATTTTCTAGCCCATTCAGAtttttttttAATAAAATCCATTGTTTCGATTGCATTG 13899
||||| |||| || | | || | | | ||| ||||| || ||||||
Sbjct 1186970 ATCCAACGCAAGGCCCCGTC---TGCCTCCTTCACAGGAAGCATCGTTTCAATGGCATTG 1186914
Query 13900 AATAAATGTTCCTTCTCTTTAGTACTTGAAATGTATGTATCAATAAGTAAGCTATACATT 13959
| | |||| | ||||| | | | ||| | || ||| |||| | || |||||
Sbjct 1186913 ACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTAAGGAGACTGTACATC 1186854
Query 13960 TCAGAGTGTATGTTTTCTATAGCTATCTGAAAACCATAAAAACATCTAGCTTCTGACCAT 14019
||||| |||||||||| || || | || || ||| ||||| | |||||||| |
Sbjct 1186853 TCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGAGCTTCTGTAATT 1186794
Query 14020 TGTACCTCCGAGTAAAATCTTTCTGCCAAGTTTTCATTAACAATACCATCACTAGCTGCA 14079
|| || || | ||||| || |||||||||||||| || | ||||||| || |||
Sbjct 1186793 TGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCATCACTGGCAGCA 1186734
Query 14080 AAAAATGCCA 14089
||||| ||||
Sbjct 1186733 AAAAAAGCCA 1186724
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 478523604240720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |