Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_004105.1
Length=209771
Score E
Sequences producing significant alignments: (Bits) Value
seq57 251 1e-61
seq6 183 4e-41
seq7443 136 5e-27
seq3 129 8e-25
seq83 114 2e-20
seq56 105 9e-18
seq171 84.2 3e-11
>seq57
Length=15126812
Score = 251 bits (278), Expect = 1e-61
Identities = 606/904 (67%), Gaps = 36/904 (4%)
Strand=Plus/Minus
Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818
||||| |||||||| | |||| ||||| || | || || | || ||||||||||||
Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261
Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878
|| | ||| ||| | |||||||| ||||| || || || | |||| || |||||
Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201
Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCA--- 41935
|||| ||| || | || ||||| | ||||| || | | | | ||||| |
Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144
Query 41936 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAG 41995
||||||||||| || | || || || | ||| | || || || || | ||| || |
Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084
Query 41996 ACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC----GGTGGATACAATAAATG 42051
|| || | | | ||| || | || || |||| ||| || | | ||
Sbjct 10750083 ACAGCAT---TGACAATT-ATTTCCTTGACTCACTACTCTAATGGTTTGTATACCAGGTG 10750028
Query 42052 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTT 42111
|| |||| || || | ||||| || || | ||||||||||| |||||| | || |
Sbjct 10750027 CTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACT 10749969
Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171
|||||| ||||| || ||||| || || | || || ||||||||||| || ||||| ||
Sbjct 10749968 GGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGA 10749909
Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 42231
|||||||||| ||| ||| | || ||||| || | || |||||||| ||
Sbjct 10749908 ACCAGAAAAGAT--TTCTTTCG-CAGCAGCAAAAGCTACAACATGTTCTCCATA---GGT 10749855
Query 42232 ACTGTCATGTATCCACTTTTGAGCCCAA-------TCGGCCTTCTTTTTTACACAAGGCA 42284
| || | ||||||| | | | || || |||||||| | ||||||||
Sbjct 10749854 AGCCTCTT-TATCCACAATCCAACACAGGGTCACGTCTGCCTTCTTCAT---ACAAGGCA 10749799
Query 42285 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGA 42344
|| |||| |||||||| ||||| ||| |||| || |||||| || | || |
Sbjct 10749798 TCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAA 10749739
Query 42345 TCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 42404
| | ||||| ||||| | ||||| ||||| || ||||| || || || || |||||||
Sbjct 10749738 TAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAAC 10749679
Query 42405 ATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTA 42464
| | ||| || |||| || |||||| | |||||| || | | ||||| || ||||
Sbjct 10749678 AGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTA 10749619
Query 42465 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT--TTTTCGTCCGG 42522
| || |||||||| ||||| || |||| || | |||||| ||| ||||| || ||
Sbjct 10749618 TACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGG 10749559
Query 42523 TGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582
| | | ||| | | | || || || | |||||| | || | ||||| ||
Sbjct 10749558 CTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAA 10749499
Query 42583 TGATGCTTCTGCCTTT-TTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAA 42641
|| || ||| |||| || ||||| | |||||||||||| ||||| || || || ||||
Sbjct 10749498 GGAGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440
Query 42642 CAAA 42645
||||
Sbjct 10749439 CAAA 10749436
>seq6
Length=52350410
Score = 183 bits (202), Expect = 4e-41
Identities = 311/448 (69%), Gaps = 6/448 (1%)
Strand=Plus/Minus
Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106
|| || || ||||||| || || ||||| ||||| |||||||||||| |||||| |
Sbjct 1187168 AAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGC 1187109
Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166
|| |||||||| ||||| || ||||| || || | || | ||||| ||| | | |||
Sbjct 1187108 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCA 1187049
Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA-TA 42225
|| || |||||||||| ||||||||| || || |||| || | | |||||| |
Sbjct 1187048 AAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTG 1186989
Query 42226 ACCGGCAC--TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 42283
|| | | |||| ||||| |||| || |||| | || ||| | ||
Sbjct 1186988 GTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCC---TTCACAGGAAGC 1186932
Query 42284 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCG 42343
|||||||| |||||||| | || | | |||| || |||||||| | | || ||
Sbjct 1186931 ATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCA 1186872
Query 42344 ATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 42403
| | ||||| ||||| || ||| | |||||||||||||| | || || || ||||
Sbjct 1186871 GTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAA 1186812
Query 42404 CATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACT 42463
|| | || || |||| || |||||| | ||||| || || || ||||| ||||||
Sbjct 1186811 CAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACT 1186752
Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCA 42491
| | |||||||| |||||||| ||||
Sbjct 1186751 GTGTCATCACTGGCAGCAAAAAAAGCCA 1186724
>seq7443
Length=1322
Score = 136 bits (150), Expect = 5e-27
Identities = 267/390 (68%), Gaps = 11/390 (3%)
Strand=Plus/Minus
Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGT-GCAGACCCTCATCTCTACTAATTAA 42105
|| || || || ||| ||| || ||||| |||| | | |||||||||| ||||| |
Sbjct 1102 AAGTGCTTGAATATCTGACAGGCAAAATCACAGTTGTAAACCCTCATCTTGGCTAATAAG 1043
Query 42106 TTCGTTGGAAAACGTGAGTCCGGG-CATTAGGCCACGCTTTTTAAGCCAAAATATAGACG 42164
|| |||||||| ||||| | ||| ||| || | | || || ||||| ||||| || |
Sbjct 1042 CTCATTGGAAAATGTGAGGCAGGGGCATCAGTCTCCATTTCTTGAGCCAGAATATTGATG 983
Query 42165 CAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 42224
|||| || | |||||||||||||| ||| || || | ||| || | | | ||| |||
Sbjct 982 CAAAGGAACTAGAAAAGAAGATTCATTCCACAGCAGGAAAAGCTACAGTACATTCTGCAT 923
Query 42225 A---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA-A 42280
| | | | |||| |||| | | ||| || |||||||| |||| |
Sbjct 922 AGGTAGCCTCTTTGTCCCCATTCCAATGCAAGGTCCAGTCTGCCTTCTT-----CACATA 868
Query 42281 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTA 42340
||||| ||| | || | ||| ||||| | | |||| || ||||||| ||| ||
Sbjct 867 GGCATTGTTGCAATAGTATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAGTATAAGTT 808
Query 42341 TCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAG 42400
|| || | ||||| ||||| || ||||| |||||||| |||||||| | | || |||
Sbjct 807 TCAATAAGGAGACTGTACATCTCAGAATGTATGTTTTCCATGGCCATTTAGAGCCCATAG 748
Query 42401 AAACATCTGGCCTCGGTAACCTGTACTTCT 42430
|||| || ||| |||| || ||||||
Sbjct 747 AAACTGTGGGGCTCTGTAATTTGAACTTCT 718
>seq3
Length=68754498
Score = 129 bits (142), Expect = 8e-25
Identities = 110/136 (81%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202
|| ||||||||||| ||||| ||||| ||||| || || |||||||| || ||||| |
Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064
Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262
||||||||||| |||| || ||||||||||| ||||||||||| || || | | || |
Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124
Query 71263 CTATTTCTAAGACCAT 71278
|||||||| | |||||
Sbjct 19114125 CTATTTCTGATACCAT 19114140
Score = 107 bits (118), Expect = 3e-18
Identities = 142/197 (72%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433
|| ||| |||| || || || || || | || | |||||| ||||| || || || |
Sbjct 19119052 GAGCCTTCATAGGTCTCATAGGGGCCATACTTCTTGGCTAGCTCACAGCTGGCTTCCAGA 19119111
Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493
|||||||||||||| ||||| || || | |||||| || || ||||| ||||| |||
Sbjct 19119112 GCTCCATAATAAATCGTTTCAAAGATTTGCTTATTCAGTAACTGGGCTTCTGGGCTTTCA 19119171
Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553
|| ||||| | | || ||||| || ||||||| ||||| || ||||| || || ||
Sbjct 19119172 AAAGGATATCTCATCAGGATAAAAGCATCTGCTAGACCTTGCACCCCAATTCCAATGGGG 19119231
Query 71554 CTGTGTCTCTTATTAGA 71570
| || | ||||| ||
Sbjct 19119232 CGATGGCGTTTATTTGA 19119248
>seq83
Length=10591344
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
||||||||| |||||| | || |||||||| ||||| || ||||| || || || || |
Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| || ||||| || |||||||||||||||||||| || || ||||| |
Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277
Query 42207 C 42207
|
Sbjct 7356278 C 7356278
>seq56
Length=15139244
Score = 105 bits (116), Expect = 9e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146
|||||||||| || || | || ||||||||||||||||||||||| || || | ||| |
Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221
Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206
| ||||| ||||| | ||||| || || || ||||||| ||||| || || |||||||
Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161
Query 42207 C 42207
|
Sbjct 9265160 C 9265160
>seq171
Length=3042471
Score = 84.2 bits (92), Expect = 3e-11
Identities = 143/203 (70%), Gaps = 6/203 (3%)
Strand=Plus/Plus
Query 39798 TCCAGTTGATCCAAATCCTT--GAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 39855
|||||| || ||||| ||| |||| || || ||| ||| || ||| ||||||
Sbjct 1173427 TCCAGTGGAACCAAAACCTCCCGAGCCCCGCTCAGTGTC--ATCCAGCACTTGAACTTCT 1173484
Query 39856 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 39915
|| | |||||||||| | || |||| | | || ||||| || || | ||| ||| |||
Sbjct 1173485 TCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCAATCGCCCTGTTTT 1173544
Query 39916 ACATTGAAAGTACATTTTCC-ATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 39974
|| || ||| | | ||||| | ||||| | | || || | ||||| ||||||||
Sbjct 1173545 AC-TTCAAACTTCTCTTTCCCAAAATTAAGCAATACAACACCAACATTTCCTCTATAATC 1173603
Query 39975 TTCGTCTATTACACCGCCTCCTA 39997
||| ||||| ||||| ||||||
Sbjct 1173604 TTCATCTATAACACCAGCTCCTA 1173626
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 671047774062480
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