Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq57 251 1e-61 seq6 183 4e-41 seq7443 136 5e-27 seq3 129 8e-25 seq83 114 2e-20 seq56 105 9e-18 seq171 84.2 3e-11 >seq57 Length=15126812 Score = 251 bits (278), Expect = 1e-61 Identities = 606/904 (67%), Gaps = 36/904 (4%) Strand=Plus/Minus Query 41759 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTCTTTCCT 41818 ||||| |||||||| | |||| ||||| || | || || | || |||||||||||| Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261 Query 41819 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 41878 || | ||| ||| | |||||||| ||||| || || || | |||| || ||||| Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201 Query 41879 CCCAATTCAGAAATCAATCTATCTGCGATGAATTCTATATATGTTTTCATCATTTCA--- 41935 |||| ||| || | || ||||| | ||||| || | | | | ||||| | Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144 Query 41936 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAG 41995 ||||||||||| || | || || || | ||| | || || || || | ||| || | Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084 Query 41996 ACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC----GGTGGATACAATAAATG 42051 || || | | | ||| || | || || |||| ||| || | | || Sbjct 10750083 ACAGCAT---TGACAATT-ATTTCCTTGACTCACTACTCTAATGGTTTGTATACCAGGTG 10750028 Query 42052 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTT 42111 || |||| || || | ||||| || || | ||||||||||| |||||| | || | Sbjct 10750027 CTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACT 10749969 Query 42112 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATGA 42171 |||||| ||||| || ||||| || || | || || ||||||||||| || ||||| || Sbjct 10749968 GGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGA 10749909 Query 42172 TCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 42231 |||||||||| ||| ||| | || ||||| || | || |||||||| || Sbjct 10749908 ACCAGAAAAGAT--TTCTTTCG-CAGCAGCAAAAGCTACAACATGTTCTCCATA---GGT 10749855 Query 42232 ACTGTCATGTATCCACTTTTGAGCCCAA-------TCGGCCTTCTTTTTTACACAAGGCA 42284 | || | ||||||| | | | || || |||||||| | |||||||| Sbjct 10749854 AGCCTCTT-TATCCACAATCCAACACAGGGTCACGTCTGCCTTCTTCAT---ACAAGGCA 10749799 Query 42285 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGA 42344 || |||| |||||||| ||||| ||| |||| || |||||| || | || | Sbjct 10749798 TCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAA 10749739 Query 42345 TCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 42404 | | ||||| ||||| | ||||| ||||| || ||||| || || || || ||||||| Sbjct 10749738 TAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAAC 10749679 Query 42405 ATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTA 42464 | | ||| || |||| || |||||| | |||||| || | | ||||| || |||| Sbjct 10749678 AGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTA 10749619 Query 42465 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATAT--TTTTCGTCCGG 42522 | || |||||||| ||||| || |||| || | |||||| ||| ||||| || || Sbjct 10749618 TACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGG 10749559 Query 42523 TGTTAATTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCTACCGTCCAAAA 42582 | | | ||| | | | || || || | |||||| | || | ||||| || Sbjct 10749558 CTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAA 10749499 Query 42583 TGATGCTTCTGCCTTT-TTATACATATTCCAGATATCATGATATTGAATTGGGAAAATAA 42641 || || ||| |||| || ||||| | |||||||||||| ||||| || || || |||| Sbjct 10749498 GGAGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440 Query 42642 CAAA 42645 |||| Sbjct 10749439 CAAA 10749436 >seq6 Length=52350410 Score = 183 bits (202), Expect = 4e-41 Identities = 311/448 (69%), Gaps = 6/448 (1%) Strand=Plus/Minus Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAAT 42106 || || || ||||||| || || ||||| ||||| |||||||||||| |||||| | Sbjct 1187168 AAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGC 1187109 Query 42107 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA 42166 || |||||||| ||||| || ||||| || || | || | ||||| ||| | | ||| Sbjct 1187108 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCA 1187049 Query 42167 AATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCA-TA 42225 || || |||||||||| ||||||||| || || |||| || | | |||||| | Sbjct 1187048 AAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTG 1186989 Query 42226 ACCGGCAC--TGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 42283 || | | |||| ||||| |||| || |||| | || ||| | || Sbjct 1186988 GTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCC---TTCACAGGAAGC 1186932 Query 42284 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCG 42343 |||||||| |||||||| | || | | |||| || |||||||| | | || || Sbjct 1186931 ATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCA 1186872 Query 42344 ATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 42403 | | ||||| ||||| || ||| | |||||||||||||| | || || || |||| Sbjct 1186871 GTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAA 1186812 Query 42404 CATCTGGCCTCGGTAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACT 42463 || | || || |||| || |||||| | ||||| || || || ||||| |||||| Sbjct 1186811 CAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACT 1186752 Query 42464 ATTCCGTCACTGGCTGCAAAAAACGCCA 42491 | | |||||||| |||||||| |||| Sbjct 1186751 GTGTCATCACTGGCAGCAAAAAAAGCCA 1186724 >seq7443 Length=1322 Score = 136 bits (150), Expect = 5e-27 Identities = 267/390 (68%), Gaps = 11/390 (3%) Strand=Plus/Minus Query 42047 AAATGTTTAAACATCAAACATGCGAAATCGCAGT-GCAGACCCTCATCTCTACTAATTAA 42105 || || || || ||| ||| || ||||| |||| | | |||||||||| ||||| | Sbjct 1102 AAGTGCTTGAATATCTGACAGGCAAAATCACAGTTGTAAACCCTCATCTTGGCTAATAAG 1043 Query 42106 TTCGTTGGAAAACGTGAGTCCGGG-CATTAGGCCACGCTTTTTAAGCCAAAATATAGACG 42164 || |||||||| ||||| | ||| ||| || | | || || ||||| ||||| || | Sbjct 1042 CTCATTGGAAAATGTGAGGCAGGGGCATCAGTCTCCATTTCTTGAGCCAGAATATTGATG 983 Query 42165 CAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCAT 42224 |||| || | |||||||||||||| ||| || || | ||| || | | | ||| ||| Sbjct 982 CAAAGGAACTAGAAAAGAAGATTCATTCCACAGCAGGAAAAGCTACAGTACATTCTGCAT 923 Query 42225 A---ACCGGCACTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA-A 42280 | | | | |||| |||| | | ||| || |||||||| |||| | Sbjct 922 AGGTAGCCTCTTTGTCCCCATTCCAATGCAAGGTCCAGTCTGCCTTCTT-----CACATA 868 Query 42281 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTA 42340 ||||| ||| | || | ||| ||||| | | |||| || ||||||| ||| || Sbjct 867 GGCATTGTTGCAATAGTATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAGTATAAGTT 808 Query 42341 TCGATCAAAAGACTATACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAG 42400 || || | ||||| ||||| || ||||| |||||||| |||||||| | | || ||| Sbjct 807 TCAATAAGGAGACTGTACATCTCAGAATGTATGTTTTCCATGGCCATTTAGAGCCCATAG 748 Query 42401 AAACATCTGGCCTCGGTAACCTGTACTTCT 42430 |||| || ||| |||| || |||||| Sbjct 747 AAACTGTGGGGCTCTGTAATTTGAACTTCT 718 >seq3 Length=68754498 Score = 129 bits (142), Expect = 8e-25 Identities = 110/136 (81%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 71143 ACTTGAAATTCTCCAGACAATACTCTACGAGTGTAAATATTACTGGTATACGGTTCCACT 71202 || ||||||||||| ||||| ||||| ||||| || || |||||||| || ||||| | Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064 Query 71203 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAGA 71262 ||||||||||| |||| || ||||||||||| ||||||||||| || || | | || | Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124 Query 71263 CTATTTCTAAGACCAT 71278 |||||||| | ||||| Sbjct 19114125 CTATTTCTGATACCAT 19114140 Score = 107 bits (118), Expect = 3e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 71374 GATCCTGCATATGTATCGTATGGTCCTTCTTTTTCGGCTAGTTCACAACTCGCCTCTAAT 71433 || ||| |||| || || || || || | || | |||||| ||||| || || || | Sbjct 19119052 GAGCCTTCATAGGTCTCATAGGGGCCATACTTCTTGGCTAGCTCACAGCTGGCTTCCAGA 19119111 Query 71434 GCTCCATAATAAATGGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCCGGGCTATCA 71493 |||||||||||||| ||||| || || | |||||| || || ||||| ||||| ||| Sbjct 19119112 GCTCCATAATAAATCGTTTCAAAGATTTGCTTATTCAGTAACTGGGCTTCTGGGCTTTCA 19119171 Query 71494 AATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACGCCAATACCGATAGGT 71553 || ||||| | | || ||||| || ||||||| ||||| || ||||| || || || Sbjct 19119172 AAAGGATATCTCATCAGGATAAAAGCATCTGCTAGACCTTGCACCCCAATTCCAATGGGG 19119231 Query 71554 CTGTGTCTCTTATTAGA 71570 | || | ||||| || Sbjct 19119232 CGATGGCGTTTATTTGA 19119248 >seq83 Length=10591344 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 ||||||||| |||||| | || |||||||| ||||| || ||||| || || || || | Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| || ||||| || |||||||||||||||||||| || || ||||| | Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277 Query 42207 C 42207 | Sbjct 7356278 C 7356278 >seq56 Length=15139244 Score = 105 bits (116), Expect = 9e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 42087 CCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 42146 |||||||||| || || | || ||||||||||||||||||||||| || || | ||| | Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221 Query 42147 TAAGCCAAAATATAGACGCAAATGATCCAGAAAAGAAGATTCCTTCTACTGCCGCAAAGG 42206 | ||||| ||||| | ||||| || || || ||||||| ||||| || || ||||||| Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161 Query 42207 C 42207 | Sbjct 9265160 C 9265160 >seq171 Length=3042471 Score = 84.2 bits (92), Expect = 3e-11 Identities = 143/203 (70%), Gaps = 6/203 (3%) Strand=Plus/Plus Query 39798 TCCAGTTGATCCAAATCCTT--GAGCTCCTCTATCTGTACTATCTAGAGATTGTACTTCT 39855 |||||| || ||||| ||| |||| || || ||| ||| || ||| |||||| Sbjct 1173427 TCCAGTGGAACCAAAACCTCCCGAGCCCCGCTCAGTGTC--ATCCAGCACTTGAACTTCT 1173484 Query 39856 TCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATCTCCCGTATTT 39915 || | |||||||||| | || |||| | | || ||||| || || | ||| ||| ||| Sbjct 1173485 TCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCAATCGCCCTGTTTT 1173544 Query 39916 ACATTGAAAGTACATTTTCC-ATTATTAATAAGAATGACTCCTATGTTTCCCCTATAATC 39974 || || ||| | | ||||| | ||||| | | || || | ||||| |||||||| Sbjct 1173545 AC-TTCAAACTTCTCTTTCCCAAAATTAAGCAATACAACACCAACATTTCCTCTATAATC 1173603 Query 39975 TTCGTCTATTACACCGCCTCCTA 39997 ||| ||||| ||||| |||||| Sbjct 1173604 TTCATCTATAACACCAGCTCCTA 1173626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671047774062480