Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq3 111 1e-19 seq73 109 4e-19 seq7 86.0 5e-12 seq4 86.0 5e-12 >seq3 Length=68754498 Score = 111 bits (122), Expect = 1e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || ||||||||||| ||| | | | || || | ||| Sbjct 7045155 TGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCCTCCAGCTGT 7045214 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 ||||||||| ||||| || || ||||| |||||| ||||| ||||| || ||| Sbjct 7045215 TTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTG 7045274 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || || ||| || |||| ||| ||||| || || ||| Sbjct 7045275 GCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATGGTCTTGCCCGTC 7045334 Query 15341 AGAGTTTTTACAAAAATTTGCATATT 15366 || || || ||| | |||||||| || Sbjct 7045335 AGGGTCTTCACAGAGATTTGCATTTT 7045360 Score = 87.8 bits (96), Expect = 1e-12 Identities = 158/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCG--C 15194 ||||| | | ||| | || | |||||||||||| | ||||| || ||||| || | Sbjct 46699776 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGAC 46699717 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 |||| ||| | ||||| | ||| || ||||| | |||| | || || || | Sbjct 46699716 AAAGAA--CTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 46699659 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 ||||||||||||| || || ||| ||||||| ||||||| || || ||| | Sbjct 46699658 GAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 46699599 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | || ||||| || || || || ||||| |||||||| ||||| Sbjct 46699598 CCTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550 >seq73 Length=12918409 Score = 109 bits (120), Expect = 4e-19 Identities = 164/232 (71%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||| | || | || || | || |||||||| ||||| || |||| |||||| Sbjct 707565 TGCCACCGCACAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCAG 707507 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 ||| | | | || || |||||||||||| |||||| || || ||||| | Sbjct 707506 AGAGAGTGCGGCCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAG 707447 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 |||| ||||| ||||| || ||| |||| ||| | || ||||| || || ||| | Sbjct 707446 GAATGCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAA 707387 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15366 | | || ||| |||||||| || ||||| || || ||||| |||||||| || Sbjct 707386 CCTGTAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTT 707335 >seq7 Length=50527172 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| | || | |||||||||||| || ||||| || ||||| || Sbjct 41286042 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGAC 41286101 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | | ||||| | ||| || ||||| | ||||| | || || || ||| Sbjct 41286102 AAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGA 41286161 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| || || ||| | Sbjct 41286162 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCC 41286221 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || || || ||||| || ||||| ||||| Sbjct 41286222 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268 >seq4 Length=53591480 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||| | | ||| | || | |||||||||||| || ||||| || ||||| || Sbjct 13584078 CCACCACGAAGTCTCAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGAC 13584019 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 | | | | | | ||||| | ||| || ||||| | |||| | || || || ||| Sbjct 13584018 AAAGTACGCTCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 13583959 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 |||||||| || || || ||| ||||||| ||||||| || || ||| ||| Sbjct 13583958 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACA 13583899 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | || ||||| || || | || ||||| |||||||| ||||| Sbjct 13583898 TCAAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362131095585018