Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq5 96.9 2e-15 seq31 87.8 1e-12 >seq5 Length=53451024 Score = 96.9 bits (106), Expect = 2e-15 Identities = 142/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || |||| ||||| |||||||| |||||||||||| || || |||| |||||||||| Sbjct 40328423 GTGGACTTCTTTTGGATATTGTAGTCAGACAAATTGCGTCCATCTTCCAGTTGCTTTCCA 40328364 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289 ||| || | | ||||| || | || || ||||| || || | | | ||| Sbjct 40328363 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC--- 40328307 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 ||||| ||| || ||||| ||||| ||| || || || || || || |||||||| Sbjct 40328306 TTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGTGTGATGGTCTTCCCCGTAAGG 40328247 Query 33350 GTTTTTACGAAAATTTGCAT 33369 ||||| | ||||| ||||| Sbjct 40328246 GTTTTCATAAAAATCTGCAT 40328227 >seq31 Length=29319519 Score = 87.8 bits (96), Expect = 1e-12 Identities = 140/200 (70%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232 || ||||||||||| |||||||| ||||||||| | || |||| ||||||| || Sbjct 3469682 GTGGACTCTTTTTGAATATTGTAGTCAGACAAAGCACGCCCATCTTCCAGTTGCTTTGCA 3469623 Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289 ||| || || | ||||| || | || || ||||| || || | | | ||| Sbjct 3469622 GCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC--- 3469566 Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349 ||||| ||| || ||||| ||||| ||| | || || || || || ||| |||| Sbjct 3469565 TTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGTCTTCCCCATAAGG 3469506 Query 33350 GTTTTTACGAAAATTTGCAT 33369 ||||| |||||||| ||||| Sbjct 3469505 GTTTTCACGAAAATCTGCAT 3469486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318735260158404