Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_005038.1
Length=99657
Score E
Sequences producing significant alignments: (Bits) Value
seq5 96.9 2e-15
seq31 87.8 1e-12
>seq5
Length=53451024
Score = 96.9 bits (106), Expect = 2e-15
Identities = 142/200 (71%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232
|| |||| ||||| |||||||| |||||||||||| || || |||| ||||||||||
Sbjct 40328423 GTGGACTTCTTTTGGATATTGTAGTCAGACAAATTGCGTCCATCTTCCAGTTGCTTTCCA 40328364
Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289
||| || | | ||||| || | || || ||||| || || | | | |||
Sbjct 40328363 GCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC--- 40328307
Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349
||||| ||| || ||||| ||||| ||| || || || || || || ||||||||
Sbjct 40328306 TTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGTGTGATGGTCTTCCCCGTAAGG 40328247
Query 33350 GTTTTTACGAAAATTTGCAT 33369
||||| | ||||| |||||
Sbjct 40328246 GTTTTCATAAAAATCTGCAT 40328227
>seq31
Length=29319519
Score = 87.8 bits (96), Expect = 1e-12
Identities = 140/200 (70%), Gaps = 6/200 (3%)
Strand=Plus/Minus
Query 33173 GTCGACTCTTTTTGTATATTGTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCA 33232
|| ||||||||||| |||||||| ||||||||| | || |||| ||||||| ||
Sbjct 3469682 GTGGACTCTTTTTGAATATTGTAGTCAGACAAAGCACGCCCATCTTCCAGTTGCTTTGCA 3469623
Query 33233 CTAAATATTAAACGTTGCTGGTCCGTGGGTATGCCTTCTTTTTC---GCTAATCGCCTGT 33289
||| || || | ||||| || | || || ||||| || || | | | |||
Sbjct 3469622 GCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCC--- 3469566
Query 33290 TTTACTGTTTGAATCGTGTCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGA 33349
||||| ||| || ||||| ||||| ||| | || || || || || ||| ||||
Sbjct 3469565 TTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGTCTTCCCCATAAGG 3469506
Query 33350 GTTTTTACGAAAATTTGCAT 33369
||||| |||||||| |||||
Sbjct 3469505 GTTTTCACGAAAATCTGCAT 3469486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 318735260158404
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |