Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_005179.1 Length=134721 Score E Sequences producing significant alignments: (Bits) Value seq6 196 4e-45 seq7443 93.3 4e-14 seq56 93.3 4e-14 >seq6 Length=52350410 Score = 196 bits (216), Expect = 4e-45 Identities = 501/749 (67%), Gaps = 13/749 (2%) Strand=Plus/Minus Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902 ||||||| || ||| | ||||| || | ||||| || |||| ||| || |||| Sbjct 1187456 TTGACATCACTCCCATCCTCTGATACTCTCCTACTCTATTCTCAACT--GTTAGTCTTTC 1187399 Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTT-TTA 12961 ||||| ||||||| ||| | || || ||| ||| |||| | | || || ||| Sbjct 1187398 CTTCTGGTAAAATATTCTCCCTGAAGTC-AAATGATATTTCTACTCTGAAAATCTTGTTA 1187340 Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021 | | ||| |||| | ||||| || ||||| || |||||||| ||||||||| | Sbjct 1187339 AAATTGAGTTCCAGTATAAGCCTGTCTGCCACAAATTCAATGTACTGCTTCATTAAAGTA 1187280 Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081 || || |||| || | || ||||||| |||||||| || | | | |||||| Sbjct 1187279 CAATTTGTTCCAATGAGCTTCACAGGCAAGGCTTCTGTGAAGATCTCCTATTCTATCCTG 1187220 Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTA 13141 || || | || || ||| || | | | | |||| |||| | | | ||||| Sbjct 1187219 ACAGCATTGACAATTATTTCCTTGACTCGCTGCTCTGATGGTTTGTGTACCAAGTGCTTG 1187160 Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201 ||||||| || |||||||||||||| | || |||||| ||| || ||||| || ||| Sbjct 1187159 AACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCATTGGAA 1187100 Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261 ||||| || || ||||| || || |||| | | ||| ||| | | ||||| ||||| Sbjct 1187099 AATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACCA 1187040 Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCT-TTCACCATACGTACTATT 13320 ||||| | |||||||| || || |||| |||| || | | ||| |||| || | | Sbjct 1187039 GAAAAGATGATTCCTTCCACAGCAGCAAGAGCTA-CAGCATGTTCTCCATTGGT-CGCCT 1186982 Query 13321 TTTACTCT-CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379 || ||| | ||||| ||||| || ||| | | | | | || ||| ||| Sbjct 1186981 CTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCT-TCACAGGAAG--CATCGTTT 1186925 Query 13380 CTATTGCGTTAAATAAATAAtt-tttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438 | || || || | || |||| |||| || ||| |||| |||| || | | Sbjct 1186924 CAATGGCATT-GACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTAAGG 1186866 Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498 | || ||||| || ||| | || ||||| || || ||||||| ||| ||||| | | Sbjct 1186865 AGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGA 1186806 Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558 || |||| | |||||||| | ||||| || || |||||||| || ||| | | Sbjct 1186805 GCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCA 1186746 Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTG 13587 ||||| |||||||||||||| || | ||| Sbjct 1186745 TCACTGGCAGCAAAAAAAGCCAGGACGTG 1186717 >seq7443 Length=1322 Score = 93.3 bits (102), Expect = 4e-14 Identities = 202/300 (67%), Gaps = 2/300 (1%) Strand=Plus/Minus Query 12998 TCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCT 13057 || ||||||| ||||| || || ||||||| || | || ||||||| || ||| Sbjct 1237 TCAATGTACTACTTCATCAACATGCAACTCATTCCAATGAGCTTCACAGGCAAGGCCTCT 1178 Query 13058 GTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCT 13117 || || | ||||||| || || | | || ||| || | | | | | |||| Sbjct 1177 GTGTGGAACCCCTGTTCTATACTGACAGCGTTGGTAGTTATTTCCTTGACTCCATGCTCT 1118 Query 13118 AATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAG-TGCAATCCTTC 13176 |||| | || | ||||| || ||| ||| |||||||||||| || || || || Sbjct 1117 CATGGTTTGTGTGCCAAGTGCTTGAATATCTGACAGGCAAAATCACAGTTGTAAACCCTC 1058 Query 13177 ATCTCTACTTATTAGCTCGTTTGAAAATGTTAGAC-CCGGCATAAGCCCTCGTTTTTTAA 13235 |||| || || ||||| || |||||||| || | ||||| || | | ||| || | Sbjct 1057 ATCTTGGCTAATAAGCTCATTGGAAAATGTGAGGCAGGGGCATCAGTCTCCATTTCTTGA 998 Query 13236 TCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTA 13295 ||| ||||| | ||||| |||| ||||| || |||| ||| || || | ||| |||| Sbjct 997 GCCAGAATATTGATGCAAAGGAACTAGAAAAGAAGATTCATTCCACAGCAGGAAAAGCTA 938 >seq56 Length=15139244 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234 |||||||| || || ||||| || ||||| || || || ||||| ||||||| || || Sbjct 9265278 TCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCTTT 9265219 Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294 | ||| ||||| ||||||||||| || || || || | ||||| || || ||||| || Sbjct 9265218 AGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGGCC 9265159 Query 13295 ATCAACCTTTCACC 13308 | || ||||| || Sbjct 9265158 ACCACTCTTTCCCC 9265145 Score = 93.3 bits (102), Expect = 4e-14 Identities = 108/143 (76%), Gaps = 2/143 (1%) Strand=Plus/Minus Query 12800 CTTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACAT 12858 ||||||||||| ||| | || || |||| ||| || || | || |||||| | | Sbjct 9286087 CTTTAAAAATCGGCATCCAAAGTGAAGACATTATCTGTGGTT-TCTGTCATAACCGCAAA 9286029 Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918 || || || ||||| ||| ||||| || ||||||||||||||||| ||||| || Sbjct 9286028 ACGCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTT 9285969 Query 12919 TTCCATAAAATCGAAAGGATTTT 12941 |||||||||||| |||||||||| Sbjct 9285968 TTCCATAAAATCAAAAGGATTTT 9285946 Score = 87.8 bits (96), Expect = 2e-12 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Minus Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039 ||||||||||| |||||||| || ||||||||||| ||| ||||||||||||| || | Sbjct 9282910 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATTCCAATGAGG 9282851 Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065 || |||| |||||||||||||| Sbjct 9282850 CCAACTGGCAAGGCTTCTGTTAAAAA 9282825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430925157186996