Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_005179.1
Length=134721
Score E
Sequences producing significant alignments: (Bits) Value
seq6 196 4e-45
seq7443 93.3 4e-14
seq56 93.3 4e-14
>seq6
Length=52350410
Score = 196 bits (216), Expect = 4e-45
Identities = 501/749 (67%), Gaps = 13/749 (2%)
Strand=Plus/Minus
Query 12843 TTGACATAACAGACATTTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTC 12902
||||||| || ||| | ||||| || | ||||| || |||| ||| || ||||
Sbjct 1187456 TTGACATCACTCCCATCCTCTGATACTCTCCTACTCTATTCTCAACT--GTTAGTCTTTC 1187399
Query 12903 CTTCTAACGAAATATTTTCCATAAAATCGAAAGGATTTTTCGAACAATAGTATTTT-TTA 12961
||||| ||||||| ||| | || || ||| ||| |||| | | || || |||
Sbjct 1187398 CTTCTGGTAAAATATTCTCCCTGAAGTC-AAATGATATTTCTACTCTGAAAATCTTGTTA 1187340
Query 12962 CACCCTAATTCTAGTAACAATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCA 13021
| | ||| |||| | ||||| || ||||| || |||||||| ||||||||| |
Sbjct 1187339 AAATTGAGTTCCAGTATAAGCCTGTCTGCCACAAATTCAATGTACTGCTTCATTAAAGTA 1187280
Query 13022 CAGTTCATTCCTATTAATTTTACAGGCATAGCTTCTGTTAAAAAGtttttttCTATATCA 13081
|| || |||| || | || ||||||| |||||||| || | | | ||||||
Sbjct 1187279 CAATTTGTTCCAATGAGCTTCACAGGCAAGGCTTCTGTGAAGATCTCCTATTCTATCCTG 1187220
Query 13082 ACTGCTTCGATAACTATGTCTCTTATTACGTTCTCTAATGGAGGATTTGATAGATGCTTA 13141
|| || | || || ||| || | | | | |||| |||| | | | |||||
Sbjct 1187219 ACAGCATTGACAATTATTTCCTTGACTCGCTGCTCTGATGGTTTGTGTACCAAGTGCTTG 1187160
Query 13142 AACATCATACATGCAAAATCACAGTGCAATCCTTCATCTCTACTTATTAGCTCGTTTGAA 13201
||||||| || |||||||||||||| | || |||||| ||| || ||||| || |||
Sbjct 1187159 AACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCATTGGAA 1187100
Query 13202 AATGTTAGACCCGGCATAAGCCCTCGTTTTTTAATCCAAAATATAGCAGCAAACGAACCC 13261
||||| || || ||||| || || |||| | | ||| ||| | | ||||| |||||
Sbjct 1187099 AATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACCA 1187040
Query 13262 GaaaaaaaTATTCCTTCAACTGCTGCAAACGCTATCAACCT-TTCACCATACGTACTATT 13320
||||| | |||||||| || || |||| |||| || | | ||| |||| || | |
Sbjct 1187039 GAAAAGATGATTCCTTCCACAGCAGCAAGAGCTA-CAGCATGTTCTCCATTGGT-CGCCT 1186982
Query 13321 TTTACTCT-CTATCCACTTTCTGGCCCAGTTTGCTTTTTGTTTAACGCAGTTCATATTTT 13379
|| ||| | ||||| ||||| || ||| | | | | | || ||| |||
Sbjct 1186981 CTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCT-TCACAGGAAG--CATCGTTT 1186925
Query 13380 CTATTGCGTTAAATAAATAAtt-tttttCCTTACTGTCTAAAATATAAGTATCTATCAAT 13438
| || || || | || |||| |||| || ||| |||| |||| || | |
Sbjct 1186924 CAATGGCATT-GACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTAAGG 1186866
Query 13439 AAGCTATACATTTCTGAATGAATATTTTCCATCGCTATTTGGAAACCATAAAAACATCTA 13498
| || ||||| || ||| | || ||||| || || ||||||| ||| ||||| | |
Sbjct 1186865 AGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGA 1186806
Query 13499 GCCTCTGATACCTGAACTTCGGAGTAAAATCTTTCTGCTAAGTTTTCGTTAACTATCCCG 13558
|| |||| | |||||||| | ||||| || || |||||||| || ||| | |
Sbjct 1186805 GCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCA 1186746
Query 13559 TCACTAGCAGCaaaaaaaGCAAGTATGTG 13587
||||| |||||||||||||| || | |||
Sbjct 1186745 TCACTGGCAGCAAAAAAAGCCAGGACGTG 1186717
>seq7443
Length=1322
Score = 93.3 bits (102), Expect = 4e-14
Identities = 202/300 (67%), Gaps = 2/300 (1%)
Strand=Plus/Minus
Query 12998 TCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAATTTTACAGGCATAGCTTCT 13057
|| ||||||| ||||| || || ||||||| || | || ||||||| || |||
Sbjct 1237 TCAATGTACTACTTCATCAACATGCAACTCATTCCAATGAGCTTCACAGGCAAGGCCTCT 1178
Query 13058 GTTAAAAAGtttttttCTATATCAACTGCTTCGATAACTATGTCTCTTATTACGTTCTCT 13117
|| || | ||||||| || || | | || ||| || | | | | | ||||
Sbjct 1177 GTGTGGAACCCCTGTTCTATACTGACAGCGTTGGTAGTTATTTCCTTGACTCCATGCTCT 1118
Query 13118 AATGGAGGATTTGATAGATGCTTAAACATCATACATGCAAAATCACAG-TGCAATCCTTC 13176
|||| | || | ||||| || ||| ||| |||||||||||| || || || ||
Sbjct 1117 CATGGTTTGTGTGCCAAGTGCTTGAATATCTGACAGGCAAAATCACAGTTGTAAACCCTC 1058
Query 13177 ATCTCTACTTATTAGCTCGTTTGAAAATGTTAGAC-CCGGCATAAGCCCTCGTTTTTTAA 13235
|||| || || ||||| || |||||||| || | ||||| || | | ||| || |
Sbjct 1057 ATCTTGGCTAATAAGCTCATTGGAAAATGTGAGGCAGGGGCATCAGTCTCCATTTCTTGA 998
Query 13236 TCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCTA 13295
||| ||||| | ||||| |||| ||||| || |||| ||| || || | ||| ||||
Sbjct 997 GCCAGAATATTGATGCAAAGGAACTAGAAAAGAAGATTCATTCCACAGCAGGAAAAGCTA 938
>seq56
Length=15139244
Score = 93.3 bits (102), Expect = 4e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Minus
Query 13175 TCATCTCTACTTATTAGCTCGTTTGAAAATGTTAGACCCGGCATAAGCCCTCGTTTTTTA 13234
|||||||| || || ||||| || ||||| || || || ||||| ||||||| || ||
Sbjct 9265278 TCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCTTT 9265219
Query 13235 ATCCAAAATATAGCAGCAAACGAACCCGaaaaaaaTATTCCTTCAACTGCTGCAAACGCT 13294
| ||| ||||| ||||||||||| || || || || | ||||| || || ||||| ||
Sbjct 9265218 AGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGGCC 9265159
Query 13295 ATCAACCTTTCACC 13308
| || ||||| ||
Sbjct 9265158 ACCACTCTTTCCCC 9265145
Score = 93.3 bits (102), Expect = 4e-14
Identities = 108/143 (76%), Gaps = 2/143 (1%)
Strand=Plus/Minus
Query 12800 CTTTAAAAATCAATATCTAGAGAAAATACATCATC-GTCCTTATTTGACATAACAGACAT 12858
||||||||||| ||| | || || |||| ||| || || | || |||||| | |
Sbjct 9286087 CTTTAAAAATCGGCATCCAAAGTGAAGACATTATCTGTGGTT-TCTGTCATAACCGCAAA 9286029
Query 12859 TTTTTGATATTCGCTAACTCTTTTTTCAAAAAAGTTTGTTTTTCCTTCTAACGAAATATT 12918
|| || || ||||| ||| ||||| || ||||||||||||||||| ||||| ||
Sbjct 9286028 ACGCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTT 9285969
Query 12919 TTCCATAAAATCGAAAGGATTTT 12941
|||||||||||| ||||||||||
Sbjct 9285968 TTCCATAAAATCAAAAGGATTTT 9285946
Score = 87.8 bits (96), Expect = 2e-12
Identities = 71/86 (83%), Gaps = 0/86 (0%)
Strand=Plus/Minus
Query 12980 AATCTGTCAGCAACAAACTCTATGTACTGTTTCATTAAATCACAGTTCATTCCTATTAAT 13039
||||||||||| |||||||| || ||||||||||| ||| ||||||||||||| || |
Sbjct 9282910 AATCTGTCAGCTACAAACTCAATATACTGTTTCATCAAAACACAGTTCATTCCAATGAGG 9282851
Query 13040 TTTACAGGCATAGCTTCTGTTAAAAA 13065
|| |||| ||||||||||||||
Sbjct 9282850 CCAACTGGCAAGGCTTCTGTTAAAAA 9282825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 430925157186996
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |