Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq62 96.9 3e-15 >seq62 Length=14465377 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 127171 GGGTGCCAAGCTCTGTCTGAGATGATTCAGTTCTACCTCGAAGAGGTCATGCCACAGGCA 127230 || ||||||| |||| |||||||| ||||| ||||| | || || ||||| ||||| Sbjct 10947344 GGCTGCCAAGTCTTGTCAGAGATGATCCAGTTTTACCTGGTGGAAGTGATGCCCCAGGCC 10947403 Query 127231 GAAAATCACGGACCCGACATAAAAGAACACGTCAATTCCCTGGGTGAAAAGCTGAAGACA 127290 || || ||||| || ||| | || || ||||| | |||||||| || ||||||||||| Sbjct 10947404 GAGAACCACGGCCCAGACGTCAAGGAGCACGTGACCTCCCTGGGGGAGAAGCTGAAGACC 10947463 Query 127291 TTGAGACTTCGACTGCGTCGCTG 127313 | | | | |||||| ||||| Sbjct 10947464 CTCCGGATACAACTGCGGCGCTG 10947486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429997280443376