Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_005832.1
Length=106332
Score E
Sequences producing significant alignments: (Bits) Value
seq19 163 2e-35
seq15 96.9 2e-15
>seq19
Length=34640225
Score = 163 bits (180), Expect = 2e-35
Identities = 321/468 (69%), Gaps = 5/468 (1%)
Strand=Plus/Minus
Query 25510 TCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCC 25569
||||||| ||||| || |||||||||||||| ||| | | || | |||||||| |
Sbjct 4394386 TCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTC 4394327
Query 25570 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATG 25629
| ||||||||||| ||||| || || |||| | | ||| || | | | || | |
Sbjct 4394326 CT-GACCTCTGGTACAGCTGGCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAGAGG 4394268
Query 25630 GTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATG 25689
| | || ||||| || || || || | |||||| |||||||||||||||| | ||
Sbjct 4394267 GCATGGCCGGGAGGCAGCGCCATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTG 4394208
Query 25690 ATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACC 25749
|| | ||||| || |||||| |||| ||| | ||||||| || |||||
Sbjct 4394207 ATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACT 4394148
Query 25750 CCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGG 25809
|| ||||||| |||| ||| || ||| || | ||||||| ||||||||||
Sbjct 4394147 CCTTGTCCCGAGTCATCTGAATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGG 4394088
Query 25810 AACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAA 25868
|| || ||||| || || | | | || |||| | |||| | || || | || ||
Sbjct 4394087 AAACCATACACTGGGCCCAAGACCCCTTCTTGTC-GTGCAGAGAATTCCAAGCTGTCGAA 4394029
Query 25869 AAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 25928
||| ||| ||| ||||| || ||||||||||| || |||| || || | |||||
Sbjct 4394028 AAAATCTTGGGACCCATTAGCATCCCAGATCTTCACTGCCTTGGATGACAG-TTTTTGGC 4393970
Query 25929 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCGTGACGGCCTT 25976
|||||||| || || | ||||||||||||| || ||| ||||
Sbjct 4393969 ATTTGTGGATCC-CTTGGTAGCCACAGCAGCTCCTCCAAAACGCCCTT 4393923
>seq15
Length=38784467
Score = 96.9 bits (106), Expect = 2e-15
Identities = 121/165 (73%), Gaps = 1/165 (1%)
Strand=Plus/Plus
Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550
|| || || |||| || |||||||| ||||| || |||||||||||||| |||||
Sbjct 20806127 AGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 20806186
Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610
|| || | ||||||| | || ||||||||||| ||||| || || | ||| | |
Sbjct 20806187 ACACCCAGGCCCATGT-CTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCAC 20806245
Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655
|||||| ||||| |||| || | ||| ||||| || || || ||
Sbjct 20806246 CACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCAG 20806290
Score = 91.5 bits (100), Expect = 1e-13
Identities = 123/169 (73%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832
||| || |||| ||||| || |||| |||||||||||| || || || || || |||||
Sbjct 20809572 CATATCTTTGTAGTCTGCCCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 20809631
Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891
|| |||| | |||| | || ||| | || | ||| |||| ||| ||||| || |
Sbjct 20809632 CCCTTCTTGTC-GTGCAGAGAATCCCAAGCTGTCGAGAAAATCTCGGGACCCATTAGCAT 20809690
Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940
|||||||||| || ||||| || || ||||| | |||||||| ||
Sbjct 20809691 CCCAGATCTTCACTCCCTTGGATGACAGTTCTTTTGCATTTGTGGATCC 20809739
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 340092423136554
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |