Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq19 163 2e-35 seq15 96.9 2e-15 >seq19 Length=34640225 Score = 163 bits (180), Expect = 2e-35 Identities = 321/468 (69%), Gaps = 5/468 (1%) Strand=Plus/Minus Query 25510 TCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCC 25569 ||||||| ||||| || |||||||||||||| ||| | | || | |||||||| | Sbjct 4394386 TCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTC 4394327 Query 25570 CCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCTCACGTAAAACTGACACATG 25629 | ||||||||||| ||||| || || |||| | | ||| || | | | || | | Sbjct 4394326 CT-GACCTCTGGTACAGCTGGCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAGAGG 4394268 Query 25630 GTGTAGCACGGAGGAAGAGCTATAAGGCCCAAGTCTTTAGGGTTCCAGGCGCACACGATG 25689 | | || ||||| || || || || | |||||| |||||||||||||||| | || Sbjct 4394267 GCATGGCCGGGAGGCAGCGCCATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTG 4394208 Query 25690 ATGCACCTGTCTTCTGGGTTGTCCCTGATAAGATCCGCGGTGTTTTGCAGCTGATCCACC 25749 || | ||||| || |||||| |||| ||| | ||||||| || ||||| Sbjct 4394207 ATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACT 4394148 Query 25750 CCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGG 25809 || ||||||| |||| ||| || ||| || | ||||||| |||||||||| Sbjct 4394147 CCTTGTCCCGAGTCATCTGAATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGG 4394088 Query 25810 AACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAA 25868 || || ||||| || || | | | || |||| | |||| | || || | || || Sbjct 4394087 AAACCATACACTGGGCCCAAGACCCCTTCTTGTC-GTGCAGAGAATTCCAAGCTGTCGAA 4394029 Query 25869 AAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGA 25928 ||| ||| ||| ||||| || ||||||||||| || |||| || || | ||||| Sbjct 4394028 AAAATCTTGGGACCCATTAGCATCCCAGATCTTCACTGCCTTGGATGACAG-TTTTTGGC 4393970 Query 25929 GTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCGTGACGGCCTT 25976 |||||||| || || | ||||||||||||| || ||| |||| Sbjct 4393969 ATTTGTGGATCC-CTTGGTAGCCACAGCAGCTCCTCCAAAACGCCCTT 4393923 >seq15 Length=38784467 Score = 96.9 bits (106), Expect = 2e-15 Identities = 121/165 (73%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 25491 AGCCCGGTAACGTAAGCCATCATGTACGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGT 25550 || || || |||| || |||||||| ||||| || |||||||||||||| ||||| Sbjct 20806127 AGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 20806186 Query 25551 ACCCCGAACCCCATGTCCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTTCGTCGCT 25610 || || | ||||||| | || ||||||||||| ||||| || || | ||| | | Sbjct 20806187 ACACCCAGGCCCATGT-CTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCAC 20806245 Query 25611 CACGTAAAACTGACACATGGTGTAGCACGGAGGAAGAGCTATAAG 25655 |||||| ||||| |||| || | ||| ||||| || || || || Sbjct 20806246 CACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCAG 20806290 Score = 91.5 bits (100), Expect = 1e-13 Identities = 123/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 25773 CATGTCCGTGTACTCTGCTCCGAAATACCTCCACTGGAACCCGTACACCGGTCCTAGGTC 25832 ||| || |||| ||||| || |||| |||||||||||| || || || || || ||||| Sbjct 20809572 CATATCTTTGTAGTCTGCCCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 20809631 Query 25833 TCCATCTTCCCTGTGCTCA-AAGCCCCTCTTATCCAAAAAGTCTCTGGAACCATTGGCGT 25891 || |||| | |||| | || ||| | || | ||| |||| ||| ||||| || | Sbjct 20809632 CCCTTCTTGTC-GTGCAGAGAATCCCAAGCTGTCGAGAAAATCTCGGGACCCATTAGCAT 20809690 Query 25892 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 25940 |||||||||| || ||||| || || ||||| | |||||||| || Sbjct 20809691 CCCAGATCTTCACTCCCTTGGATGACAGTTCTTTTGCATTTGTGGATCC 20809739 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340092423136554