Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq7 86.0 5e-12 >seq7 Length=50527172 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 |||||| ||| |||||||||||| ||||| |||| ||| ||| | || ||||| || Sbjct 41286065 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 41286124 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || | | || || | ||||||||| || | | |||||| ||| || || Sbjct 41286125 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 41286184 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | |||| || || | | || | ||||| || ||||| || || || Sbjct 41286185 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGT 41286244 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 || |||||||| |||||||||||| Sbjct 41286245 AAGGGTTTTCACGAAAATCTGCATC 41286269 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421195249678898