Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq154 87.8 9e-13
seq57 82.4 4e-11
>seq154
Length=3898418
Score = 87.8 bits (96), Expect = 9e-13
Identities = 56/62 (90%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 3198128 GGATCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3198069
Query 11528 CC 11529
||
Sbjct 3198068 CC 3198067
Score = 86.0 bits (94), Expect = 3e-12
Identities = 70/85 (82%), Gaps = 2/85 (2%)
Strand=Plus/Minus
Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504
|||||| || |||||| | |||||||||| ||||||| ||||||||||||| |||
Sbjct 3011350 AAAAAT--AACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 3011293
Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529
|||| |||||||||||||| ||||
Sbjct 3011292 CTCTAACCAACTGAGCTAACCGGCC 3011268
Score = 86.0 bits (94), Expect = 3e-12
Identities = 71/86 (83%), Gaps = 1/86 (1%)
Strand=Plus/Minus
Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503
|| ||| ||||| ||||| | |||||||||| ||||||| ||||||||||||| ||
Sbjct 3465020 AATAAAACAAAT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 3464962
Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529
||||| |||||||||||||| ||||
Sbjct 3464961 GCTCTAACCAACTGAGCTAACCGGCC 3464936
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 2874167 GGATCGAACCCACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2874226
Query 11528 CC 11529
||
Sbjct 2874227 CC 2874228
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 3485393 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3485452
Query 11528 CC 11529
||
Sbjct 3485453 CC 3485454
>seq57
Length=15126812
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 9013085 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9013026
Query 11528 CC 11529
||
Sbjct 9013025 CC 9013024
Score = 82.4 bits (90), Expect = 4e-11
Identities = 55/62 (89%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527
|||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| ||
Sbjct 9037163 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9037222
Query 11528 CC 11529
||
Sbjct 9037223 CC 9037224
Lambda K H
0.639 0.410 0.921
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261456468902248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |