Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq154 87.8 9e-13 seq57 82.4 4e-11 >seq154 Length=3898418 Score = 87.8 bits (96), Expect = 9e-13 Identities = 56/62 (90%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 ||||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3198128 GGATCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3198069 Query 11528 CC 11529 || Sbjct 3198068 CC 3198067 Score = 86.0 bits (94), Expect = 3e-12 Identities = 70/85 (82%), Gaps = 2/85 (2%) Strand=Plus/Minus Query 11445 AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACG 11504 |||||| || |||||| | |||||||||| ||||||| ||||||||||||| ||| Sbjct 3011350 AAAAAT--AACTGGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCACG 3011293 Query 11505 CTCTRACCAACTGAGCTAATGGGCC 11529 |||| |||||||||||||| |||| Sbjct 3011292 CTCTAACCAACTGAGCTAACCGGCC 3011268 Score = 86.0 bits (94), Expect = 3e-12 Identities = 71/86 (83%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 || ||| ||||| ||||| | |||||||||| ||||||| ||||||||||||| || Sbjct 3465020 AATAAAACAAAT-GGCCCGTACGGGGATCGAACCCGCGACCTTGGCGTTATTAGCACCAC 3464962 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||||||||||||| |||| Sbjct 3464961 GCTCTAACCAACTGAGCTAACCGGCC 3464936 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 2874167 GGATCGAACCCACGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 2874226 Query 11528 CC 11529 || Sbjct 2874227 CC 2874228 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 3485393 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 3485452 Query 11528 CC 11529 || Sbjct 3485453 CC 3485454 >seq57 Length=15126812 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 9013085 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9013026 Query 11528 CC 11529 || Sbjct 9013025 CC 9013024 Score = 82.4 bits (90), Expect = 4e-11 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 11468 GGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGG 11527 |||||||||| ||||||| ||||||||||||| ||||||| |||||||||||||| || Sbjct 9037163 GGATCGAACCCGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAACTGAGCTAACCGG 9037222 Query 11528 CC 11529 || Sbjct 9037223 CC 9037224 Lambda K H 0.639 0.410 0.921 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261456468902248