Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_006146.1
Length=171096
Score E
Sequences producing significant alignments: (Bits) Value
seq62 127 2e-24
>seq62
Length=14465377
Score = 127 bits (140), Expect = 2e-24
Identities = 108/133 (81%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199
|||| |||||||| || || | | |||| || ||||||||||||||||||| |||||| |
Sbjct 10947333 AGGGTTACCTGGGCTGCCAAGTCTTGTCAGAGATGATCCAGTTTTACCTGGTGGAAGTGA 10947392
Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259
|||| ||||| || || || | ||| ||| ||| |||||||||| ||| ||||| ||||
Sbjct 10947393 TGCCCCAGGCCGAGAACCACGGCCCAGACGTCAAGGAGCACGTGACCTCCCTGGGGGAGA 10947452
Query 10260 ATCTAAAGACCCT 10272
| || ||||||||
Sbjct 10947453 AGCTGAAGACCCT 10947465
Score = 82.4 bits (90), Expect = 8e-11
Identities = 69/85 (81%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418
|||| ||||| || || |||||||||||||||||||| || || | || || |||| |
Sbjct 10949512 AGCTCCAGGAGAAGGGCGTCTACAAAGCCATGAGTGAGTTCGATGTCTTCATAAACTGCA 10949571
Query 10419 TAGAAGCATACATGACCATGAAAAT 10443
||||||| |||||||| ||||| ||
Sbjct 10949572 TAGAAGCCTACATGACGATGAAGAT 10949596
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 547304633268480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |