Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_006146.1 Length=171096 Score E Sequences producing significant alignments: (Bits) Value seq62 127 2e-24 >seq62 Length=14465377 Score = 127 bits (140), Expect = 2e-24 Identities = 108/133 (81%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 10140 AGGGCTACCTGGGATGTCAGGCCCTGTCTGAAATGATCCAGTTTTACCTGGAGGAAGTAA 10199 |||| |||||||| || || | | |||| || ||||||||||||||||||| |||||| | Sbjct 10947333 AGGGTTACCTGGGCTGCCAAGTCTTGTCAGAGATGATCCAGTTTTACCTGGTGGAAGTGA 10947392 Query 10200 TGCCACAGGCTGAAAATCAGGACCCCCACGCCAAAGAGCACGTGAACTCTCTGGGCGAGA 10259 |||| ||||| || || || | ||| ||| ||| |||||||||| ||| ||||| |||| Sbjct 10947393 TGCCCCAGGCCGAGAACCACGGCCCAGACGTCAAGGAGCACGTGACCTCCCTGGGGGAGA 10947452 Query 10260 ATCTAAAGACCCT 10272 | || |||||||| Sbjct 10947453 AGCTGAAGACCCT 10947465 Score = 82.4 bits (90), Expect = 8e-11 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 10359 AGCTGCAGGAAAAAGGAGTCTACAAAGCCATGAGTGAATTTGACATTTTTATTAACTATA 10418 |||| ||||| || || |||||||||||||||||||| || || | || || |||| | Sbjct 10949512 AGCTCCAGGAGAAGGGCGTCTACAAAGCCATGAGTGAGTTCGATGTCTTCATAAACTGCA 10949571 Query 10419 TAGAAGCATACATGACCATGAAAAT 10443 ||||||| |||||||| ||||| || Sbjct 10949572 TAGAAGCCTACATGACGATGAAGAT 10949596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547304633268480