Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_006150.1 Length=221454 Score E Sequences producing significant alignments: (Bits) Value seq31 141 1e-28 seq54 98.7 1e-15 seq49 91.5 2e-13 >seq31 Length=29319519 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 9632 TGGTCTGAAACAGTTGTTCGTCACTCCATTCTGGATGTTCTCGTTTCAGAACATCGCACA 9691 ||||||| || || | || ||| |||| ||||| ||||| || |||| | || |||| Sbjct 1008810 TGGTCTGGAAGAGCCGCTCATCATTCCACTCTGGGTGTTCCTGTCTCAGCATGTCACACA 1008869 Query 9692 CTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAGGCACCAGGCCAA 9751 ||||||||||||||| |||||||| || ||||||||||| || ||||||||||| |||| Sbjct 1008870 CTCTGTTGTGTTCCCGCAGCCAGATCGTGGCGTACATCATCAGGCCAGGCACCAGACCAA 1008929 Query 9752 AAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAGGATAGATCATGT 9811 | |||| || || ||||| | |||| | || || | ||||| || ||||| | Sbjct 1008930 AGACCTCATGCCCCACAGCAAACCGCAGGTGATCAGGGGTGTGAGGAGGGTAAATCATTT 1008989 Query 9812 GCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAATCT 9862 |||||| ||| |||| | || || |||| || || ||||||| || Sbjct 1008990 CCACCTGAGTGTCTCTGACTGTAGGTGGGTACACCTCTCCATCAATAACCT 1009040 >seq54 Length=15450234 Score = 98.7 bits (108), Expect = 1e-15 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 8741 TTGACGATCCCAAACCCCACGTCTCCGCCGAAGGTGCTGGGTTTCCAGTAACCCGGGGAG 8800 ||||||| ||| |||| || || || || || || || ||||||| | || || Sbjct 11057282 TTGACGACGTTAAAGCCCATCTCACCACCAAATGTACTTGGCCTCCAGTACTCTGGAGAA 11057223 Query 8801 CAGATGACGTTCGCCATGAGGCCTTTGAGGGAAAACGGAGCCCCCAGCTCGAGAATGCTC 8860 |||||| || | | ||| || |||||||| || || ||||| | ||| | || ||| Sbjct 11057222 CAGATGGGATTTCCTAGGAGACCCTTGAGGGAGAAGGGCGCCCCGATCTCTATCATACTC 11057163 Query 8861 TCACCGAAGATGGCGTTGGGACGGGGCTTTTCCACCAAGAATCCGGTGTACAACTCCACA 8920 || || ||||||| |||||| || |||||| | | | || | ||| ||||||| | Sbjct 11057162 TCCCCAAAGATGGAGTTGGGCTGGCACTTTTCAAGAAGCAGCCCTGGGTAGAACTCCAAA 11057103 Query 8921 GCCTCGATGTCTCCGTAAAGGGCCCTGAGTTCGGCAGCGATTTCCTTTTCTCCT 8974 || ||||||||||| || | | | ||||| || |||||| | |||||| Sbjct 11057102 GCGTCGATGTCTCCATATAACTCTTCCAACTCGGCTGCCATTTCCGTCTCTCCT 11057049 >seq49 Length=17435334 Score = 91.5 bits (100), Expect = 2e-13 Identities = 366/566 (65%), Gaps = 14/566 (2%) Strand=Plus/Minus Query 9385 AGTATGGAATTGTTGTAAACGAAGTTAATGTAGTCATACTT-TGTTTTATCAATCTCAAA 9443 |||||||| |||||||| | || || | || |||| || | | ||||| | ||| Sbjct 4663680 AGTATGGAGTTGTTGTAGAGAAACTTT-TAAAGCTGTACTCCTGGTCT-TCAATTTGAAA 4663623 Query 9444 CGCATCCGGCATGAGAGAATGCCAGTGATACAACATGTTAAACTCGGAAAATATACGATT 9503 | ||| |||| || | |||| |||||| | ||||||| || | | || || || Sbjct 4663622 GGTATCAGGCAGCAGGGGGTGCCGGTGATAAAGAGTGTTAAAATCAGCAGCGATCCGGTT 4663563 Query 9504 TTGGTACTGGAACGAAGTACCAAAGAGCAGTTCGGGCTTAAACAGCAACTGAAAGTGGTA 9563 |||||||| || | |||||||| || || || ||| | | ||||| || Sbjct 4663562 CTGGTACTGCGACTGTTTGTTGAAGAGCAGCTCTGGGTTCAACTTTAGATTGAAGTGATA 4663503 Query 9564 GCCGCTGAGCTGCTGAACATACTGCGTCACGATAA-TGTTGATTGTTTCCCCGATAATGA 9622 || || | ||||| ||||| | | ||| || | | | ||| || || || | | | Sbjct 4663502 ACCACTCACGTGCTGGACATAGT-CTTCA--ATCAGTCTCGATGGTCTCTCCTGTCAGAA 4663446 Query 9623 TGAGTCGAGTGGTCTGAAA--CAGTTGTTCGTCACTCC-ATTCTGGATGTTCTCGTTTCA 9679 |||| | | ||||| | | || || || ||| | ||||| || || || ||| Sbjct 4663445 TGAGCCTGCCAGCCTGAAGAGCCGCTGGTCATCCATCCCACTCTGGGTGCTCCTGTCTCA 4663386 Query 9680 GAACATCGCACACTCTGTTGTGTTCCCTGAGCCAGATAGTAGCGTACATCATGAGACCAG 9739 | | || ||||||| ||| |||| |||||||| | ||||||||||| || || | Sbjct 4663385 GCGCGTC----ACTCTGTCGTGCTCCCGCAGCCAGATCGCGGCGTACATCATCAGGCCTG 4663330 Query 9740 GCACCAGGCCAAAAGCCTCTTGACCGACAGCCAGACGCATATTTTCGGGCACTTCGGGAG 9799 ||||||| ||||| |||| | || ||||| | |||| | || || | |||| Sbjct 4663329 GCACCAGACCAAAGACCTCACGCCCCACAGCAAACCGCAGGTGATCAGGGGTGTGAGGAG 4663270 Query 9800 GATAGATCATGTGCACCTGGACATCTTTGACCGAGGGGGGATACATTTCACCGTCAATAA 9859 | | ||||| | | || | ||| |||| | || || |||| || || | ||| | Sbjct 4663269 GGCAAATCATTTCCGCCCGAGTGTCTCTGACTGTAGGCGGGTACACCTCTCCATGAATGA 4663210 Query 9860 TCTGATACTTATCTTTCGCGTCTCTGAAGAGACGCAACTTTGACTGTTTTTCTGGCGTCT 9919 |||||| || ||| | || |||| || |||| || ||| | ||| | | | Sbjct 4663209 CCTGATATTTCAATTTTCCATCCTTGAAAAGGCGCAGTTTATGTTGTCTATCTAGACTGT 4663150 Query 9920 CTCCATAGATGTGGTTGAGATCCACC 9945 | ||||| |||||| | | |||||| Sbjct 4663149 CACCATAAATGTGGCTTAAGTCCACC 4663124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 708428281209120