Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq116 122 8e-23
seq3 120 3e-22
seq133 111 1e-19
seq4 105 6e-18
seq73 100 3e-16
seq44 98.7 9e-16
seq138 96.9 3e-15
>seq116
Length=7179089
Score = 122 bits (134), Expect = 8e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840
|| ||||| | || | ||||| ||||| || || ||||| || | ||| || || |
Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423
Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900
| ||| | ||| |||||||| || ||| ||||||| | || ||||| || || ||
Sbjct 4848424 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4848483
Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960
|| || |||||||| | || |||||||||||| ||| |||||| | | || ||
Sbjct 4848484 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4848543
Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| | |||||||| || || || || || |||||||||||||||||
Sbjct 4848544 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4848590
>seq3
Length=68754498
Score = 120 bits (132), Expect = 3e-22
Identities = 120/156 (77%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||| || ||||| ||||||| | ||| |||||||| |||||||| ||||||||
Sbjct 46699705 ATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCTTT 46699646
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || | | |||||| | | | || || |||| ||||||
Sbjct 46699645 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGAT 46699586
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || ||||| ||||||||||| ||||||||
Sbjct 46699585 GGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550
Score = 100 bits (110), Expect = 3e-16
Identities = 151/215 (70%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| ||||| ||||| || || || || || | ||| ||||| | |||| | |
Sbjct 7045143 CGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA 7045202
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|||||||||||||| || | | || | | ||||| ||||| ||||| ||||| |||
Sbjct 7045203 TCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTG 7045262
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || |||||||| ||| |||||| | | || || || | ||||||
Sbjct 7045263 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATG 7045322
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || || |||||| |||| |||||
Sbjct 7045323 GTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCAT 7045357
>seq133
Length=5915255
Score = 111 bits (122), Expect = 1e-19
Identities = 118/156 (76%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||| || ||||| ||||||| ||||| |||||||| |||||||| ||||| ||
Sbjct 1746553 ATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTT 1746612
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || | | |||||| | | | || || || | |||||
Sbjct 1746613 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGAT 1746672
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || ||| |||| ||||||||||| ||||||||
Sbjct 1746673 GGTCTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708
>seq4
Length=53591480
Score = 105 bits (116), Expect = 6e-18
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||| || ||||| ||||||| | || |||||||| |||||||| ||||| ||
Sbjct 13584007 ATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 13583948
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || | | |||||| | | | || || |||| ||||||
Sbjct 13583947 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGAT 13583888
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || |||| ||||||||||| ||||||||
Sbjct 13583887 GGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852
>seq73
Length=12918409
Score = 100 bits (110), Expect = 3e-16
Identities = 152/215 (71%), Gaps = 1/215 (0%)
Strand=Plus/Minus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||||||||| ||||| || || || || || | || ||||| | |||| | |
Sbjct 707551 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTG-TAATCAGAGAGAGTGCGGCCA 707493
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
|||||| ||||||| || | || || | | ||||| ||||||||||| ||||| |||
Sbjct 707492 TCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTG 707433
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || | |||||| ||| |||||| | | || || | | ||||||
Sbjct 707432 TCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATG 707373
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || || || ||||||||||| |||||
Sbjct 707372 GTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 707338
>seq44
Length=18557718
Score = 98.7 bits (108), Expect = 9e-16
Identities = 116/156 (74%), Gaps = 2/156 (1%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| || || || ||||| ||||||| | ||| |||||||| |||||||| ||||| ||
Sbjct 841742 ATCTTCAAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 841801
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || ||| ||||| | | | || || || | ||||||
Sbjct 841802 ATCCTGGATCTTGGCCTTTACATTTTCGA--GTGTCCGAGGGTTCAACCTCGAACGTGAT 841859
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || || |||| ||||||||||| ||||||||
Sbjct 841860 GGTCTTCCCCTTAAGGGTTTTCACAAAAATCTGCAT 841895
>seq138
Length=5537732
Score = 96.9 bits (106), Expect = 3e-15
Identities = 115/156 (74%), Gaps = 0/156 (0%)
Strand=Plus/Minus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
||| ||||| || ||||| |||||| ||||| |||||||| |||||||| ||||| ||
Sbjct 893839 ATCTTCCAGTTGCTTTCCAGAAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTT 893780
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | || || ||||| || | | |||||| | | || || |||| | | ||
Sbjct 893779 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAAGGGCTCAACCTCAAGCATAAT 893720
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| | || ||||| ||||||||||| ||||||||
Sbjct 893719 GGTCGTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 893684
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448230131531280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |