Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq116 122 8e-23 seq3 120 3e-22 seq133 111 1e-19 seq4 105 6e-18 seq73 100 3e-16 seq44 98.7 9e-16 seq138 96.9 3e-15 >seq116 Length=7179089 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 94781 CCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTC 94840 || ||||| | || | ||||| ||||| || || ||||| || | ||| || || | Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423 Query 94841 ATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGA 94900 | ||| | ||| |||||||| || ||| ||||||| | || ||||| || || || Sbjct 4848424 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4848483 Query 94901 ATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACG 94960 || || |||||||| | || |||||||||||| ||| |||||| | | || || Sbjct 4848484 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4848543 Query 94961 TCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || | |||||||| || || || || || ||||||||||||||||| Sbjct 4848544 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4848590 >seq3 Length=68754498 Score = 120 bits (132), Expect = 3e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || ||||| ||||||| | ||| |||||||| |||||||| |||||||| Sbjct 46699705 ATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCTTT 46699646 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || |||| |||||| Sbjct 46699645 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGAT 46699586 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || ||||| ||||||||||| |||||||| Sbjct 46699585 GGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| ||||| || || || || || | ||| ||||| | |||| | | Sbjct 7045143 CGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA 7045202 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 |||||||||||||| || | | || | | ||||| ||||| ||||| ||||| ||| Sbjct 7045203 TCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTG 7045262 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || |||||||| ||| |||||| | | || || || | |||||| Sbjct 7045263 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATG 7045322 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || |||||| |||| ||||| Sbjct 7045323 GTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCAT 7045357 >seq133 Length=5915255 Score = 111 bits (122), Expect = 1e-19 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || ||||| ||||||| ||||| |||||||| |||||||| ||||| || Sbjct 1746553 ATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTT 1746612 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || || | ||||| Sbjct 1746613 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGTGTGAT 1746672 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||| |||| ||||||||||| |||||||| Sbjct 1746673 GGTCTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708 >seq4 Length=53591480 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || ||||| ||||||| | || |||||||| |||||||| ||||| || Sbjct 13584007 ATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTT 13583948 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | | || || |||| |||||| Sbjct 13583947 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGAT 13583888 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || |||| ||||||||||| |||||||| Sbjct 13583887 GGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852 >seq73 Length=12918409 Score = 100 bits (110), Expect = 3e-16 Identities = 152/215 (71%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||| ||||| || || || || || | || ||||| | |||| | | Sbjct 707551 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTG-TAATCAGAGAGAGTGCGGCCA 707493 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 |||||| ||||||| || | || || | | ||||| ||||||||||| ||||| ||| Sbjct 707492 TCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTG 707433 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | |||||| ||| |||||| | | || || | | |||||| Sbjct 707432 TCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATG 707373 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || ||||||||||| ||||| Sbjct 707372 GTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 707338 >seq44 Length=18557718 Score = 98.7 bits (108), Expect = 9e-16 Identities = 116/156 (74%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| || || || ||||| ||||||| | ||| |||||||| |||||||| ||||| || Sbjct 841742 ATCTTCAAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTT 841801 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || ||| ||||| | | | || || || | |||||| Sbjct 841802 ATCCTGGATCTTGGCCTTTACATTTTCGA--GTGTCCGAGGGTTCAACCTCGAACGTGAT 841859 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || || |||| ||||||||||| |||||||| Sbjct 841860 GGTCTTCCCCTTAAGGGTTTTCACAAAAATCTGCAT 841895 >seq138 Length=5537732 Score = 96.9 bits (106), Expect = 3e-15 Identities = 115/156 (74%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 ||| ||||| || ||||| |||||| ||||| |||||||| |||||||| ||||| || Sbjct 893839 ATCTTCCAGTTGCTTTCCAGAAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTT 893780 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | || || ||||| || | | |||||| | | || || |||| | | || Sbjct 893779 ATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAAGGGCTCAACCTCAAGCATAAT 893720 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| | || ||||| ||||||||||| |||||||| Sbjct 893719 GGTCGTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 893684 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448230131531280