Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq29 141 1e-29 seq154 132 8e-27 >seq29 Length=29433701 Score = 141 bits (156), Expect = 1e-29 Identities = 190/262 (73%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | |||| || ||||||||||| || ||||| ||||| || | Sbjct 14477481 CGCCAAGCGCCACCGCA-AGGTCTTGCGGGATAACATCCAGGGCATCACTAAGCCCGCCA 14477539 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || |||||||| || || || |||||||| |||| || | |||| || |||| Sbjct 14477540 TCCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGA 14477599 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || | ||| ||||||| ||| ||| |||| || || || ||| |||| Sbjct 14477600 CCCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCG 14477659 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || ||||| | || || || | Sbjct 14477660 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTATGCGCTCAAGCGCCAGG 14477719 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || || || Sbjct 14477720 GCCGCACGCTCTACGGCTTCGG 14477741 >seq154 Length=3898418 Score = 132 bits (146), Expect = 8e-27 Identities = 188/262 (72%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 3741395 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 3741453 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 3741454 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 3741513 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| ||||| ||||||| ||| ||| |||| || || || || || | Sbjct 3741514 CCCGCGGTGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 3741573 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 3741574 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 3741633 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || || || Sbjct 3741634 GCCGCACGCTCTACGGCTTCGG 3741655 Score = 127 bits (140), Expect = 3e-25 Identities = 187/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 2828425 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2828483 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 2828484 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 2828543 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| ||||||| ||| ||| |||| || || || || || | Sbjct 2828544 CCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 2828603 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 2828604 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 2828663 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || || || Sbjct 2828664 GCCGCACGCTCTACGGCTTCGG 2828685 Score = 127 bits (140), Expect = 3e-25 Identities = 187/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 2833400 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2833342 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 2833341 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 2833282 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| ||||||| ||| ||| |||| || || || || || | Sbjct 2833281 CCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 2833222 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 2833221 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 2833162 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || || || Sbjct 2833161 GCCGCACGCTCTACGGCTTCGG 2833140 Score = 127 bits (140), Expect = 3e-25 Identities = 187/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 3570968 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 3571026 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 3571027 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 3571086 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| ||||||| ||| ||| |||| || || || || || | Sbjct 3571087 CCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 3571146 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 3571147 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 3571206 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || || || Sbjct 3571207 GCCGCACGCTCTACGGCTTCGG 3571228 Score = 127 bits (140), Expect = 3e-25 Identities = 187/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 3604582 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 3604524 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 3604523 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 3604464 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| ||||||| ||| ||| |||| || || || || || | Sbjct 3604463 CCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 3604404 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 3604403 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 3604344 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || || || Sbjct 3604343 GCCGCACGCTCTACGGCTTCGG 3604322 Score = 127 bits (140), Expect = 3e-25 Identities = 187/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 3698639 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 3698697 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 3698698 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 3698757 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || ||||| ||||||| ||| ||| |||| || || || || || | Sbjct 3698758 CCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 3698817 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 3698818 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 3698877 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || || || Sbjct 3698878 GCCGCACGCTCTACGGCTTCGG 3698899 Score = 123 bits (136), Expect = 4e-24 Identities = 186/262 (71%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||| || |||| | || || || || |||||||| || ||||||||||| || | Sbjct 2984780 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2984722 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||| || ||||| || || || || |||||||| |||| || | |||| || |||| Sbjct 2984721 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 2984662 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | || |||| ||||||| ||| ||| |||| || || || || || | Sbjct 2984661 CCCGCGGCGTGCTGAATGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 2984602 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 ||||||| || || ||||| ||||| ||||||| | || || || | || || || | Sbjct 2984601 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 2984542 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 |||| | | | || || || || Sbjct 2984541 GCCGCACGCTCTACGGCTTCGG 2984520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79065235882314