Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq29 141 1e-29
seq154 132 8e-27
>seq29
Length=29433701
Score = 141 bits (156), Expect = 1e-29
Identities = 190/262 (73%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | |||| || ||||||||||| || ||||| ||||| || |
Sbjct 14477481 CGCCAAGCGCCACCGCA-AGGTCTTGCGGGATAACATCCAGGGCATCACTAAGCCCGCCA 14477539
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || |||||||| || || || |||||||| |||| || | |||| || ||||
Sbjct 14477540 TCCGCCGCCTGGCTCGCCGCGGCGGCGTCAAGCGCATCTCGGGGCTCATCTACGAGGAGA 14477599
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || | ||| ||||||| ||| ||| |||| || || || ||| ||||
Sbjct 14477600 CCCGCGGGGTGCTCAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACCTACACCG 14477659
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | || ||||| | || || || |
Sbjct 14477660 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTATGCGCTCAAGCGCCAGG 14477719
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | | || || || ||
Sbjct 14477720 GCCGCACGCTCTACGGCTTCGG 14477741
>seq154
Length=3898418
Score = 132 bits (146), Expect = 8e-27
Identities = 188/262 (72%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 3741395 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 3741453
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 3741454 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 3741513
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | ||| ||||| ||||||| ||| ||| |||| || || || || || |
Sbjct 3741514 CCCGCGGTGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 3741573
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | || || || | || || || |
Sbjct 3741574 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 3741633
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | | || || || ||
Sbjct 3741634 GCCGCACGCTCTACGGCTTCGG 3741655
Score = 127 bits (140), Expect = 3e-25
Identities = 187/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 2828425 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2828483
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 2828484 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 2828543
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| ||||||| ||| ||| |||| || || || || || |
Sbjct 2828544 CCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 2828603
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | || || || | || || || |
Sbjct 2828604 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 2828663
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | | || || || ||
Sbjct 2828664 GCCGCACGCTCTACGGCTTCGG 2828685
Score = 127 bits (140), Expect = 3e-25
Identities = 187/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 2833400 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2833342
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 2833341 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 2833282
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| ||||||| ||| ||| |||| || || || || || |
Sbjct 2833281 CCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 2833222
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | || || || | || || || |
Sbjct 2833221 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 2833162
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | | || || || ||
Sbjct 2833161 GCCGCACGCTCTACGGCTTCGG 2833140
Score = 127 bits (140), Expect = 3e-25
Identities = 187/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 3570968 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 3571026
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 3571027 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 3571086
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| ||||||| ||| ||| |||| || || || || || |
Sbjct 3571087 CCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 3571146
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | || || || | || || || |
Sbjct 3571147 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 3571206
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | | || || || ||
Sbjct 3571207 GCCGCACGCTCTACGGCTTCGG 3571228
Score = 127 bits (140), Expect = 3e-25
Identities = 187/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 3604582 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 3604524
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 3604523 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 3604464
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| ||||||| ||| ||| |||| || || || || || |
Sbjct 3604463 CCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 3604404
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | || || || | || || || |
Sbjct 3604403 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 3604344
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | | || || || ||
Sbjct 3604343 GCCGCACGCTCTACGGCTTCGG 3604322
Score = 127 bits (140), Expect = 3e-25
Identities = 187/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Plus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 3698639 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 3698697
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 3698698 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 3698757
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || ||||| ||||||| ||| ||| |||| || || || || || |
Sbjct 3698758 CCCGCGGCGTGCTGAAGGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 3698817
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | || || || | || || || |
Sbjct 3698818 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 3698877
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | | || || || ||
Sbjct 3698878 GCCGCACGCTCTACGGCTTCGG 3698899
Score = 123 bits (136), Expect = 4e-24
Identities = 186/262 (71%), Gaps = 2/262 (1%)
Strand=Plus/Minus
Query 16432 CGCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490
||| ||||| || |||| | || || || || |||||||| || ||||||||||| || |
Sbjct 2984780 CGCCAAGCGGCACCGCAAGGTC-CTGCGCGACAACATCCAGGGCATCACCAAGCCCGCCA 2984722
Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550
|||| || ||||| || || || || |||||||| |||| || | |||| || ||||
Sbjct 2984721 TCCGGCGCCTGGCCCGCCGCGGCGGCGTCAAGCGCATCTCGGGCCTCATCTACGAGGAGA 2984662
Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610
|| | || |||| ||||||| ||| ||| |||| || || || || || |
Sbjct 2984661 CCCGCGGCGTGCTGAATGTCTTCCTGGAGAACGTGATCCGCGACGCCGTCACGTACACGG 2984602
Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670
||||||| || || ||||| ||||| ||||||| | || || || | || || || |
Sbjct 2984601 AGCACGCCAAGCGCAAGACGGTCACGGCCATGGACGTGGTGTACGCGCTCAAGCGCCAGG 2984542
Query 16671 GCCGTAAGATTTATGGTTTTGG 16692
|||| | | | || || || ||
Sbjct 2984541 GCCGCACGCTCTACGGCTTCGG 2984520
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79065235882314
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