Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_006966.1 Length=166259 Score E Sequences producing significant alignments: (Bits) Value seq57 196 5e-45 seq56 89.7 5e-13 >seq57 Length=15126812 Score = 196 bits (216), Expect = 5e-45 Identities = 610/933 (65%), Gaps = 19/933 (2%) Strand=Plus/Minus Query 21134 TCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTTTTTGATAA 21193 |||||||| || |||| ||| ||| | |||||||| | |||||| | || | Sbjct 10750356 TCAGCATCCAAGCTGAAAGAATTCTCTGTTGGGTTTGACATCACTCCCATCCTCTGGTGC 10750297 Query 21194 TCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATTCCATAAAA 21253 |||| ||||| || || | || || ||||||||||| | ||| ||| ||||| || Sbjct 10750296 TCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTCTAGTGAAATAATCTCCATGAAG 10750237 Query 21254 TCAAATGGATTTTCAGATTTAAATATTTTATTACAACCCAGTTCTGATAATAA-TCTATC 21312 |||||||| ||||| | | || || || ||| |||||| ||| | |||| || || Sbjct 10750236 TCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAACCCATTTC-CAGCATAAGCCTGTC 10750178 Query 21313 TGCTACAAATTCTATATATTGACACATTAATTCACAATTCATACCGATCAATTTTACAGG 21372 ||| |||||||| || | || |||||| |||||||| || || || || ||||| Sbjct 10750177 TGCCACAAATTCAATGTTCTGCTTCATTAAAGTGCAATTCATTCCAATGAACTTCACAGG 10750118 Query 21373 AAGAGCTTTTGTCAAAAAAGATTTTTCTATAGAGACGGCTTCAACAATTATATTTATTA- 21431 | || | ||| | || | |||||| ||| || | |||||||| | | | Sbjct 10750117 CAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTGACAGCATTGACAATTATTTCCTTGAC 10750058 Query 21432 TC-CTAGATGTACTAGGGGGATACAATAATTGTTTAAACATCAAACATGCAAAATCACAA 21490 || ||| | || | || || | | || || |||| || || | |||||||| | Sbjct 10750057 TCACTA-CTCTAAT-GGTTTGTATACCAGGTGCTTGAACACCAGGCAGGTAAAATCAC-A 10750001 Query 21491 TGCAAACCTTCATCCCTACTTATTAATTCATTAGAAAATGTTAAACCGGGCATTAATCCT 21550 || ||||| ||||| | ||| || | ||| | |||||||| | || ||||| | ||| Sbjct 10750000 TGTAAACCCTCATCTCGACTAATAAGCTCACTGGAAAATGTGAGGCCAGGCATCAGTCC- 10749942 Query 21551 CTCTTT-TTTAACCAAAATATTGACGCAAATGCTCCTGAAAAGAAAATGCCCTCAACGGC 21609 || ||| || | |||||||||||| ||||| | || |||||| || | | | || Sbjct 10749941 CTGTTTCTTGAGCCAAAATATTGATGCAAAAGAACCAGAAAAG---ATTTCTTTCGCAGC 10749885 Query 21610 AGCAAATGCAACTAATCGTTCACCGTATGTAGATTCTTTATCCAATATCCATTTTTCTGC 21669 |||||| || || | |||| || || |||| |||||||||| ||||| | Sbjct 10749884 AGCAAAAGCTACAACATGTTCTCCATAGGTAGCCTCTTTATCCACAATCCAACACAGGGT 10749825 Query 21670 CCATTTTGCCTTTTCTTTAATACAATCAATTGTATCAATAGCTTTTAAAAGATGAttttt 21729 | | |||||| || |||||| || | ||||| || || || || | | Sbjct 10749824 CACGTCTGCCTT---CTTCATACAAGGCATCCTTTCAATGGCATTGAAGAGGAAGTCCCT 10749768 Query 21730 ttCATCTACATCGGTTATGNNNNNNNNNNNNNNNNNACTATACATTTCAGAATGTATATT 21789 ||| | ||||| || || ||| ||||| |||||||||| || Sbjct 10749767 TTCTTTGACATCTTTTGTGTAAATGTCAATAAGGAGACTGTACATCCCAGAATGTATGTT 10749708 Query 21790 TTCTATCGCTATCTGAAATCCGTAAAAACATCTTGCCTCTGAACATTGAACCTCGGAATA 21849 || || || || || || || || ||||| | || |||| | |||||| || Sbjct 10749707 ATCCATGGCAATTTGGAACCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTCTTGGCT 10749648 Query 21850 AAATCGTTGAGCCAAGTTTTCATTTACTATTCCATCACTGGCGGCAAAAAATGCCAATAT 21909 |||||| | ||| ||||||||||||||| ||||||||||| ||||| || |||| | Sbjct 10749647 AAATCGCTCCACCATGTTTTCATTTACTATACCATCACTGGCAGCAAAGAAAGCCAGAAC 10749588 Query 21910 ATTTTTTATAAAATATC--GTTCGTTATCTGTTAATTTTTTCCAAT-CTAATAAATCTTT 21966 |||||| |||| ||| | | | | || ||| | || | | || || Sbjct 10749587 GAGAGATATAAAGTATCTTTTTCTTCAGGCTTCAGGGCTTCCCAGTGCTGA-ACGTCCTT 10749529 Query 21967 TGATAAATCTACTTCTTCAGTTGTCCAAAAGCTAGCAATAGCCTTTTTATACATAATCCA 22026 || | |||||| | |||| |||||| ||| || | || || || ||||| ||| Sbjct 10749528 GGAAAGATCTACCACCTCAGCTGTCCAGAAGGAGGCCCTGGCTTTCTTGTACATCTGCCA 10749469 Query 22027 GATATCATTATATATTATTGGAAATATTACAAA 22059 |||||||| ||| || ||||| || ||||| Sbjct 10749468 GATATCATGCTATTGCATAGGAAAGATAACAAA 10749436 >seq56 Length=15139244 Score = 89.7 bits (98), Expect = 5e-13 Identities = 105/142 (74%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 21126 TTTAAAAATCAGCATCTAATGAGAAAACATTATCTTCtttttttGACATAATTCCCATTT 21185 |||||||||| ||||| || | ||| ||||||||| ||| || ||||| | | Sbjct 9286086 TTTAAAAATCGGCATCCAAAGTGAAGACATTATCTGTGGTTTCTGTCATAACCGCAAAAC 9286027 Query 21186 TTTGATAATCACTAACTCTTTTTTCGAAAAAATTTGTCTTTCCTTCCAATGATATAGATT 21245 || || || ||||| ||| || || |||||||| |||||||| || || || || Sbjct 9286026 GCTGGTACTCTGAAACTCGTTTCTCAAAGAAATTTGTTTTTCCTTCTAAAGAAATGTTTT 9285967 Query 21246 CCATAAAATCAAATGGATTTTC 21267 ||||||||||||| |||||||| Sbjct 9285966 CCATAAAATCAAAAGGATTTTC 9285945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531828341813520