Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq57 257 2e-63 seq6 210 3e-49 seq7443 141 1e-28 seq3 131 2e-25 seq175 127 3e-24 seq83 114 2e-20 seq56 114 2e-20 seq63 87.8 2e-12 seq171 84.2 3e-11 >seq57 Length=15126812 Score = 257 bits (284), Expect = 2e-63 Identities = 607/904 (67%), Gaps = 36/904 (4%) Strand=Plus/Minus Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057 ||||| |||||||| | |||| ||||| || | || || | || ||||| |||||| Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261 Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 33117 || | ||| ||| | |||||||| ||||| || || || | |||| || ||||| Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201 Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCA--- 33174 |||| ||| || | || || || || ||||| || | | | | ||||| | Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144 Query 33175 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGAT 33234 ||||||||||| || | || || || | ||| | || || || || | ||| || Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084 Query 33235 ACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATGCAATAAA---TG 33290 || |||| | | ||| || | | || |||| ||| | ||| || Sbjct 10750083 ACAGCAT---TGACAATT-ATTTCCTTGACTCACTACTCTAATGGTTTGTATACCAGGTG 10750028 Query 33291 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTT 33350 || |||| || || | ||||| || || | |||||| |||| |||||| || || | Sbjct 10750027 CTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACT 10749969 Query 33351 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33410 |||||| ||||| || ||||| || || | || || ||||||||||| || || || || Sbjct 10749968 GGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGA 10749909 Query 33411 TCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33470 |||||| |||||| ||| | |||||||| || | || |||||||| || Sbjct 10749908 ACCAGAA---AAGATTTCTTTCGCAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGC 10749852 Query 33471 GCTGTCATGTATCCACTTTTGAGCCCA-------ATCGGCCTTCTTTTTTACACAAGGCA 33523 || | ||||||| | | | || || |||||| || | |||||||| Sbjct 10749851 -CT---CTTTATCCACAATCCAACACAGGGTCACGTCTGCCTTC---TTCATACAAGGCA 10749799 Query 33524 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGA 33583 || |||| |||||||| ||||| ||| |||| || |||||| ||| | || | Sbjct 10749798 TCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAA 10749739 Query 33584 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 33643 | | ||||| ||||| | ||||| ||||| || ||||| || || || || ||||||| Sbjct 10749738 TAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAAC 10749679 Query 33644 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTA 33703 | | || || ||||| || |||||| | |||||| ||| ||| |||||||| |||| Sbjct 10749678 AGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTA 10749619 Query 33704 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA--ATATTTTTCGTCTGG 33761 | || |||||||| ||||| || |||| || | |||||| || |||||| || || Sbjct 10749618 TACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGG 10749559 Query 33762 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 33821 | || | ||| | | | || || || | |||||| | || ||||||| || Sbjct 10749558 CTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAA 10749499 Query 33822 TGATGCCTCTGCCTTT-TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAA 33880 || ||| ||| |||| || ||||| | |||||| |||| ||||| || || || |||| Sbjct 10749498 GGAGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440 Query 33881 CAAA 33884 |||| Sbjct 10749439 CAAA 10749436 >seq6 Length=52350410 Score = 210 bits (232), Expect = 3e-49 Identities = 317/448 (71%), Gaps = 6/448 (1%) Strand=Plus/Minus Query 33286 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 33345 || || || ||||||| || || ||||| ||||| |||||||| ||| |||||| || Sbjct 1187168 AAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGC 1187109 Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405 || |||||||| ||||| || ||||| || || | || | ||||| ||| | | || Sbjct 1187108 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCA 1187049 Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33465 || || |||||||||| ||||||||| || ||||||| || | | ||||||| Sbjct 1187048 AAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTG 1186989 Query 33466 C-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33522 || | || ||| ||||| |||| || |||| ||| ||| | || Sbjct 1186988 GTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCTTC---ACAGGAAGC 1186932 Query 33523 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33582 |||||||| |||||||| | || | | |||| || |||||||| | |||| || Sbjct 1186931 ATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCA 1186872 Query 33583 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33642 | | ||||| ||||| || ||| | |||||||||||||| | || || || |||| Sbjct 1186871 GTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAA 1186812 Query 33643 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACT 33702 || | ||| || ||||| || |||||| | ||||| |||||||| |||||||||||| Sbjct 1186811 CAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACT 1186752 Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCA 33730 | | |||||||| |||||||| |||| Sbjct 1186751 GTGTCATCACTGGCAGCAAAAAAAGCCA 1186724 >seq7443 Length=1322 Score = 141 bits (156), Expect = 1e-28 Identities = 268/390 (69%), Gaps = 11/390 (3%) Strand=Plus/Minus Query 33286 AAATGTTTAAACATCAAACATGCGAAATCGCAGT-GCAGACCCTCGTCTCTACTAATTAG 33344 || || || || ||| ||| || ||||| |||| | | |||||| ||| ||||| || Sbjct 1102 AAGTGCTTGAATATCTGACAGGCAAAATCACAGTTGTAAACCCTCATCTTGGCTAATAAG 1043 Query 33345 TTCGTTGGAAAACGTGAGTCCGGG-CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAG 33403 || |||||||| ||||| | ||| ||| || | | || || ||||| ||||| || | Sbjct 1042 CTCATTGGAAAATGTGAGGCAGGGGCATCAGTCTCCATTTCTTGAGCCAGAATATTGATG 983 Query 33404 CGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCAT 33463 | || || | |||||||||||||| ||| || |||| ||| || | | | ||| ||| Sbjct 982 CAAAGGAACTAGAAAAGAAGATTCATTCCACAGCAGGAAAAGCTACAGTACATTCTGCAT 923 Query 33464 A---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA-A 33519 | | | | |||| |||| | | ||| || |||||||| |||| | Sbjct 922 AGGTAGCCTCTTTGTCCCCATTCCAATGCAAGGTCCAGTCTGCCTTCTT-----CACATA 868 Query 33520 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTA 33579 ||||| ||| | || | ||| ||||| | | |||| || ||||||| |||||| Sbjct 867 GGCATTGTTGCAATAGTATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAGTATAAGTT 808 Query 33580 TCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAG 33639 || || | ||||| ||||| || ||||| |||||||| |||||||| | | || ||| Sbjct 807 TCAATAAGGAGACTGTACATCTCAGAATGTATGTTTTCCATGGCCATTTAGAGCCCATAG 748 Query 33640 AAACATCTAGCCTCGGTAATCTGTACTTCT 33669 |||| | ||| ||||| || |||||| Sbjct 747 AAACTGTGGGGCTCTGTAATTTGAACTTCT 718 >seq3 Length=68754498 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396 || ||||||||||| ||||| ||||| ||||| || || |||||||| || ||||| | Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064 Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456 ||||||||||| |||| || ||||||||||| ||||||||||| || || | | |||| Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124 Query 62457 CTATTTCTAAGACCGTA 62473 |||||||| | ||| || Sbjct 19114125 CTATTTCTGATACCATA 19114141 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271 || |||||||||||| |||||||| |||||||| || || | || ||||| | || | Sbjct 19125208 CTCCACTCGTTTCATGAAGAGATCTGGAATCCACAGGGCAAAGAAAAGATCCCGGGCACG 19125267 Query 63272 ATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63330 ||||| || || ||||| ||||| |||||| || || ||| | | || || | |||| Sbjct 19125268 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCTAAGTGCC 19125326 Query 63331 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364 | || |||| ||| || || | |||||||||| Sbjct 19125327 AAGGCTCCAGGTAAATAGCAAATGCTCCAGGCCG 19125360 >seq175 Length=2612143 Score = 127 bits (140), Expect = 3e-24 Identities = 264/393 (67%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552 |||||||| || || || || ||| | ||| ||||| || | ||||| | | | | | Sbjct 1473349 GCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTAAATAAAAACTCT 1473290 Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612 | | || |||| | | |||| ||| |||| | || || || || || ||| Sbjct 1473289 CTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATCTCTGAGTGAGCA 1473230 Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672 || || ||| |||| ||| || |||||||| |||||| | || || || || Sbjct 1473229 TTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACGTGCACGTC---- 1473174 Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732 | || || || ||||||||||||| || ||| | || |||| ||||||||| || || Sbjct 1473173 CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCAAAAAAGGCTAAG 1473114 Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792 | || ||||||| || | |||||| | || ||||| | | || ||| || Sbjct 1473113 ATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAAGGGAGATCCTTT 1473054 Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAG 33852 |||| || | || || ||||||| || |||| || || | |||||||| ||||| Sbjct 1473053 GATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTATACATCTTCCAA 1472994 Query 33853 ATGTCATAATATTGGATTGGGAAAATAACAAAT 33885 || ||| || |||||||| ||||| |||||| Sbjct 1472993 ATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961 >seq83 Length=10591344 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| |||| |||||| || || |||||||| ||||| || ||||| || || || || | Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||| || || || || |||||||||||||||||||| || |||||||| | Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277 Query 33446 C 33446 | Sbjct 7356278 C 7356278 >seq56 Length=15139244 Score = 114 bits (126), Expect = 2e-20 Identities = 98/121 (81%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385 |||| ||||| || || || || ||||||||||||||||||||||| || || | ||| | Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221 Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445 | ||||| ||||||| ||| || || || || ||||||| ||||| || |||||||||| Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161 Query 33446 C 33446 | Sbjct 9265160 C 9265160 >seq63 Length=13740492 Score = 87.8 bits (96), Expect = 2e-12 Identities = 145/208 (70%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 31096 TGTACTTCTTCCAGTTCTGGATAATATATA--CGTTGATAGATTAGCTGAGCTATTCTAT 31153 || |||||||| | ||||||||| | | | |||| | | || ||||| || || | || Sbjct 12332013 TGAACTTCTTCTATGTCTGGATAAAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGAT 12331954 Query 31154 CTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTC 31213 | || ||||| | |||| | ||| ||| ||||| | | | || | |||| Sbjct 12331953 CGCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAACAATACAAAACCAACATTTC 12331894 Query 31214 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 31270 | ||||||||||| ||||| ||||| |||||| |||||| | ||||| | || | Sbjct 12331893 CTCTATAATCTTCATCTATAACACCAGCTCCTACATCAATGAAGTGTTTTACAGCCAAGC 12331834 Query 31271 CAGACCTAGGAGCTATTCTACCATAGCA 31298 |||| | ||||||| ||| |||||||| Sbjct 12331833 CAGAGCGTGGAGCTACTCTTCCATAGCA 12331806 >seq171 Length=3042471 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/207 (70%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 31095 TTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31154 ||| |||||||| | |||||||||| | || |||| | | || ||||| || || | ||| Sbjct 1173475 TTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCAATC 1173534 Query 31155 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31214 || ||||| | |||| | ||| ||| ||||| | | || || | ||||| Sbjct 1173535 GCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAGCAATACAACACCAACATTTCC 1173594 Query 31215 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31271 ||||||||||| ||||| ||||| |||||| | | || | ||||| | || || Sbjct 1173595 TCTATAATCTTCATCTATAACACCAGCTCCTACACCGATGAAGTGTTTTACAGCCAAGCC 1173654 Query 31272 AGACCTAGGAGCTATTCTACCATAGCA 31298 ||| | ||| ||| ||| ||| |||| Sbjct 1173655 AGAGCGTGGAACTACTCTTCCA-AGCA 1173680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622862339017680