Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_006998.1
Length=194711
Score E
Sequences producing significant alignments: (Bits) Value
seq57 257 2e-63
seq6 210 3e-49
seq7443 141 1e-28
seq3 131 2e-25
seq175 127 3e-24
seq83 114 2e-20
seq56 114 2e-20
seq63 87.8 2e-12
seq171 84.2 3e-11
>seq57
Length=15126812
Score = 257 bits (284), Expect = 2e-63
Identities = 607/904 (67%), Gaps = 36/904 (4%)
Strand=Plus/Minus
Query 32998 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCT 33057
||||| |||||||| | |||| ||||| || | || || | || ||||| ||||||
Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261
Query 33058 TCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAAtttttttAAAT 33117
|| | ||| ||| | |||||||| ||||| || || || | |||| || |||||
Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201
Query 33118 CCCAATTCAGAAATCAATCTATCCGCGACGAATTCTATATATGTTTTCATCATTTCA--- 33174
|||| ||| || | || || || || ||||| || | | | | ||||| |
Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144
Query 33175 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCGCAGTAAGAAATTCTTGTTCAATGGAT 33234
||||||||||| || | || || || | ||| | || || || || | ||| ||
Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084
Query 33235 ACCGCATCTGTTATAATAGATCTAACGGTTTCTTCACTCGG-TGGATGCAATAAA---TG 33290
|| |||| | | ||| || | | || |||| ||| | ||| ||
Sbjct 10750083 ACAGCAT---TGACAATT-ATTTCCTTGACTCACTACTCTAATGGTTTGTATACCAGGTG 10750028
Query 33291 TTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTT 33350
|| |||| || || | ||||| || || | |||||| |||| |||||| || || |
Sbjct 10750027 CTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACT 10749969
Query 33351 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGA 33410
|||||| ||||| || ||||| || || | || || ||||||||||| || || || ||
Sbjct 10749968 GGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGA 10749909
Query 33411 TCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 33470
|||||| |||||| ||| | |||||||| || | || |||||||| ||
Sbjct 10749908 ACCAGAA---AAGATTTCTTTCGCAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGC 10749852
Query 33471 GCTGTCATGTATCCACTTTTGAGCCCA-------ATCGGCCTTCTTTTTTACACAAGGCA 33523
|| | ||||||| | | | || || |||||| || | ||||||||
Sbjct 10749851 -CT---CTTTATCCACAATCCAACACAGGGTCACGTCTGCCTTC---TTCATACAAGGCA 10749799
Query 33524 TCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGA 33583
|| |||| |||||||| ||||| ||| |||| || |||||| ||| | || |
Sbjct 10749798 TCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAA 10749739
Query 33584 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAAC 33643
| | ||||| ||||| | ||||| ||||| || ||||| || || || || |||||||
Sbjct 10749738 TAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAAC 10749679
Query 33644 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTA 33703
| | || || ||||| || |||||| | |||||| ||| ||| |||||||| ||||
Sbjct 10749678 AGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTA 10749619
Query 33704 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA--ATATTTTTCGTCTGG 33761
| || |||||||| ||||| || |||| || | |||||| || |||||| || ||
Sbjct 10749618 TACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGG 10749559
Query 33762 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAA 33821
| || | ||| | | | || || || | |||||| | || ||||||| ||
Sbjct 10749558 CTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAA 10749499
Query 33822 TGATGCCTCTGCCTTT-TTATACATGTTCCAGATGTCATAATATTGGATTGGGAAAATAA 33880
|| ||| ||| |||| || ||||| | |||||| |||| ||||| || || || ||||
Sbjct 10749498 GGAGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440
Query 33881 CAAA 33884
||||
Sbjct 10749439 CAAA 10749436
>seq6
Length=52350410
Score = 210 bits (232), Expect = 3e-49
Identities = 317/448 (71%), Gaps = 6/448 (1%)
Strand=Plus/Minus
Query 33286 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGT 33345
|| || || ||||||| || || ||||| ||||| |||||||| ||| |||||| ||
Sbjct 1187168 AAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGC 1187109
Query 33346 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCG 33405
|| |||||||| ||||| || ||||| || || | || | ||||| ||| | | ||
Sbjct 1187108 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCA 1187049
Query 33406 AATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAA 33465
|| || |||||||||| ||||||||| || ||||||| || | | |||||||
Sbjct 1187048 AAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTG 1186989
Query 33466 C-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 33522
|| | || ||| ||||| |||| || |||| ||| ||| | ||
Sbjct 1186988 GTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCTTC---ACAGGAAGC 1186932
Query 33523 ATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCG 33582
|||||||| |||||||| | || | | |||| || |||||||| | |||| ||
Sbjct 1186931 ATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCA 1186872
Query 33583 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAA 33642
| | ||||| ||||| || ||| | |||||||||||||| | || || || ||||
Sbjct 1186871 GTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAA 1186812
Query 33643 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACT 33702
|| | ||| || ||||| || |||||| | ||||| |||||||| ||||||||||||
Sbjct 1186811 CAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACT 1186752
Query 33703 ATTCCGTCACTGGCTGCAAAAAACGCCA 33730
| | |||||||| |||||||| ||||
Sbjct 1186751 GTGTCATCACTGGCAGCAAAAAAAGCCA 1186724
>seq7443
Length=1322
Score = 141 bits (156), Expect = 1e-28
Identities = 268/390 (69%), Gaps = 11/390 (3%)
Strand=Plus/Minus
Query 33286 AAATGTTTAAACATCAAACATGCGAAATCGCAGT-GCAGACCCTCGTCTCTACTAATTAG 33344
|| || || || ||| ||| || ||||| |||| | | |||||| ||| ||||| ||
Sbjct 1102 AAGTGCTTGAATATCTGACAGGCAAAATCACAGTTGTAAACCCTCATCTTGGCTAATAAG 1043
Query 33345 TTCGTTGGAAAACGTGAGTCCGGG-CATTAGGCCACGCTTTTTAAGCCAAAATATGGAAG 33403
|| |||||||| ||||| | ||| ||| || | | || || ||||| ||||| || |
Sbjct 1042 CTCATTGGAAAATGTGAGGCAGGGGCATCAGTCTCCATTTCTTGAGCCAGAATATTGATG 983
Query 33404 CGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCAT 33463
| || || | |||||||||||||| ||| || |||| ||| || | | | ||| |||
Sbjct 982 CAAAGGAACTAGAAAAGAAGATTCATTCCACAGCAGGAAAAGCTACAGTACATTCTGCAT 923
Query 33464 A---ACCGGCGCTGTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACA-A 33519
| | | | |||| |||| | | ||| || |||||||| |||| |
Sbjct 922 AGGTAGCCTCTTTGTCCCCATTCCAATGCAAGGTCCAGTCTGCCTTCTT-----CACATA 868
Query 33520 GGCATCGTTTCTATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTA 33579
||||| ||| | || | ||| ||||| | | |||| || ||||||| ||||||
Sbjct 867 GGCATTGTTGCAATAGTATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAGTATAAGTT 808
Query 33580 TCGATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAG 33639
|| || | ||||| ||||| || ||||| |||||||| |||||||| | | || |||
Sbjct 807 TCAATAAGGAGACTGTACATCTCAGAATGTATGTTTTCCATGGCCATTTAGAGCCCATAG 748
Query 33640 AAACATCTAGCCTCGGTAATCTGTACTTCT 33669
|||| | ||| ||||| || ||||||
Sbjct 747 AAACTGTGGGGCTCTGTAATTTGAACTTCT 718
>seq3
Length=68754498
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62337 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACC 62396
|| ||||||||||| ||||| ||||| ||||| || || |||||||| || ||||| |
Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064
Query 62397 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62456
||||||||||| |||| || ||||||||||| ||||||||||| || || | | ||||
Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124
Query 62457 CTATTTCTAAGACCGTA 62473
|||||||| | ||| ||
Sbjct 19114125 CTATTTCTGATACCATA 19114141
Score = 91.5 bits (100), Expect = 2e-13
Identities = 114/154 (74%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 63212 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63271
|| |||||||||||| |||||||| |||||||| || || | || ||||| | || |
Sbjct 19125208 CTCCACTCGTTTCATGAAGAGATCTGGAATCCACAGGGCAAAGAAAAGATCCCGGGCACG 19125267
Query 63272 ATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63330
||||| || || ||||| ||||| |||||| || || ||| | | || || | ||||
Sbjct 19125268 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCTAAGTGCC 19125326
Query 63331 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63364
| || |||| ||| || || | ||||||||||
Sbjct 19125327 AAGGCTCCAGGTAAATAGCAAATGCTCCAGGCCG 19125360
>seq175
Length=2612143
Score = 127 bits (140), Expect = 3e-24
Identities = 264/393 (67%), Gaps = 4/393 (1%)
Strand=Plus/Minus
Query 33493 GCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAGATAGttt 33552
|||||||| || || || || ||| | ||| ||||| || | ||||| | | | | |
Sbjct 1473349 GCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTAAATAAAAACTCT 1473290
Query 33553 ttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTTCCGAATGAATG 33612
| | || |||| | | |||| ||| |||| | || || || || || |||
Sbjct 1473289 CTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATCTCTGAGTGAGCA 1473230
Query 33613 TTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGTACTTCTGTA 33672
|| || ||| |||| ||| || |||||||| |||||| | || || || ||
Sbjct 1473229 TTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACGTGCACGTC---- 1473174
Query 33673 CAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33732
| || || || ||||||||||||| || ||| | || |||| ||||||||| || ||
Sbjct 1473173 CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCAAAAAAGGCTAAG 1473114
Query 33733 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33792
| || ||||||| || | |||||| | || ||||| | | || ||| ||
Sbjct 1473113 ATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAAGGGAGATCCTTT 1473054
Query 33793 GATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATGTTCCAG 33852
|||| || | || || ||||||| || |||| || || | |||||||| |||||
Sbjct 1473053 GATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTATACATCTTCCAA 1472994
Query 33853 ATGTCATAATATTGGATTGGGAAAATAACAAAT 33885
|| ||| || |||||||| ||||| ||||||
Sbjct 1472993 ATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961
>seq83
Length=10591344
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| |||| |||||| || || |||||||| ||||| || ||||| || || || || |
Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||| || || || || |||||||||||||||||||| || |||||||| |
Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277
Query 33446 C 33446
|
Sbjct 7356278 C 7356278
>seq56
Length=15139244
Score = 114 bits (126), Expect = 2e-20
Identities = 98/121 (81%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 33326 CCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33385
|||| ||||| || || || || ||||||||||||||||||||||| || || | ||| |
Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221
Query 33386 TAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33445
| ||||| ||||||| ||| || || || || ||||||| ||||| || ||||||||||
Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161
Query 33446 C 33446
|
Sbjct 9265160 C 9265160
>seq63
Length=13740492
Score = 87.8 bits (96), Expect = 2e-12
Identities = 145/208 (70%), Gaps = 5/208 (2%)
Strand=Plus/Minus
Query 31096 TGTACTTCTTCCAGTTCTGGATAATATATA--CGTTGATAGATTAGCTGAGCTATTCTAT 31153
|| |||||||| | ||||||||| | | | |||| | | || ||||| || || | ||
Sbjct 12332013 TGAACTTCTTCTATGTCTGGATAAAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGAT 12331954
Query 31154 CTCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTC 31213
| || ||||| | |||| | ||| ||| ||||| | | | || | ||||
Sbjct 12331953 CGCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAACAATACAAAACCAACATTTC 12331894
Query 31214 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 31270
| ||||||||||| ||||| ||||| |||||| |||||| | ||||| | || |
Sbjct 12331893 CTCTATAATCTTCATCTATAACACCAGCTCCTACATCAATGAAGTGTTTTACAGCCAAGC 12331834
Query 31271 CAGACCTAGGAGCTATTCTACCATAGCA 31298
|||| | ||||||| ||| ||||||||
Sbjct 12331833 CAGAGCGTGGAGCTACTCTTCCATAGCA 12331806
>seq171
Length=3042471
Score = 84.2 bits (92), Expect = 3e-11
Identities = 144/207 (70%), Gaps = 4/207 (2%)
Strand=Plus/Plus
Query 31095 TTGTACTTCTTCCAGTTCTGGATAATATATACGTTGATAGATTAGCTGAGCTATTCTATC 31154
||| |||||||| | |||||||||| | || |||| | | || ||||| || || | |||
Sbjct 1173475 TTGAACTTCTTCTATTTCTGGATAAAAAATCCGTTCACAAATAAGCTGTGCAATCCAATC 1173534
Query 31155 TCCAGTATTTACATTAAACGTACATTTTCCATTATTAATAAGAATGACTCCTATGTTTCC 31214
|| ||||| | |||| | ||| ||| ||||| | | || || | |||||
Sbjct 1173535 GCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAGCAATACAACACCAACATTTCC 1173594
Query 31215 CCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGACC 31271
||||||||||| ||||| ||||| |||||| | | || | ||||| | || ||
Sbjct 1173595 TCTATAATCTTCATCTATAACACCAGCTCCTACACCGATGAAGTGTTTTACAGCCAAGCC 1173654
Query 31272 AGACCTAGGAGCTATTCTACCATAGCA 31298
||| | ||| ||| ||| ||| ||||
Sbjct 1173655 AGAGCGTGGAACTACTCTTCCA-AGCA 1173680
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 622862339017680
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |