Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq83 91.5 4e-13
seq3 91.5 4e-13
seq15 86.0 2e-11
>seq83
Length=10591344
Score = 91.5 bits (100), Expect = 4e-13
Identities = 100/133 (75%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548
|||||| | | || ||||||| || ||||| || ||||||||||| | ||| ||
Sbjct 7356290 GAACGTGTGGTAGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 7356231
Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608
|| || ||||| || ||||| | | | ||||| || || || ||||| |||||| | |||
Sbjct 7356230 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTCACATTTTCCAATGAGCTTATT 7356171
Query 22609 AGCCGAGATGAGG 22621
|| ||||||||||
Sbjct 7356170 AGTCGAGATGAGG 7356158
>seq3
Length=68754498
Score = 91.5 bits (100), Expect = 4e-13
Identities = 88/113 (78%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170
|| ||| |||| |||| ||||||||| || ||||||| ||||| || || || || |||
Sbjct 19123165 GCGCAGCAGCTTTGGTATGCCATCATCGAGTCGCAGACAGAGACGGGCACCCCGTACATG 19123106
Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223
| ||||||||||| || ||||| ||| ||| |||||| |||| || || ||
Sbjct 19123105 CTCTACAAAGATTCCTGTAACCGGAAGAGCAATCAGCAGAACCTGGGAACCAT 19123053
>seq15
Length=38784467
Score = 86.0 bits (94), Expect = 2e-11
Identities = 122/167 (73%), Gaps = 6/167 (4%)
Strand=Plus/Minus
Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449
||||||||||| ||||| || | || || || || ||||||| ||||| || ||
Sbjct 20809733 ACAAATGCAAAAGAACTGTCATCCAAGGGAGTGAAGATCTGGGATGCTAATGGGTCCCGA 20809674
Query 111450 GACTTTCTAGATTCAG-TTGGTCTTGTCGACAACGA--AGAAGGTGATCTCGGACCAGTT 111506
|| ||||| || ||| |||| || || || ||| |||||| || || || ||||||
Sbjct 20809673 GATTTTCTCGA--CAGCTTGGGATTCTCTGCA-CGACAAGAAGGGGACCTGGGCCCAGTT 20809617
Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553
|| || || || ||| | || ||||| |||||||||||| |||||
Sbjct 20809616 TATGGTTTCCAGTGGAGGCATTTTGGGGCAGACTACAAAGATATGCA 20809570
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303171611922236
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |