Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq83 91.5 4e-13 seq3 91.5 4e-13 seq15 86.0 2e-11 >seq83 Length=10591344 Score = 91.5 bits (100), Expect = 4e-13 Identities = 100/133 (75%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 22489 GAACGTCTTATTGCATTTGCTGTGGTTGAAGGCATTTTCTTTTCTGGAGCATTTTGTGCA 22548 |||||| | | || ||||||| || ||||| || ||||||||||| | ||| || Sbjct 7356290 GAACGTGTGGTAGCTTTTGCTGCTGTGGAAGGAATCTTCTTTTCTGGTTCTTTTGCATCA 7356231 Query 22549 ATCTTTTGGCTaaaaaaaCGTGCAATTATGCCGGGTCTAACGTTTTCAAATGAGTTAATT 22608 || || ||||| || ||||| | | | ||||| || || || ||||| |||||| | ||| Sbjct 7356230 ATATTCTGGCTCAAGAAACGGGGACTGATGCCTGGCCTCACATTTTCCAATGAGCTTATT 7356171 Query 22609 AGCCGAGATGAGG 22621 || |||||||||| Sbjct 7356170 AGTCGAGATGAGG 7356158 >seq3 Length=68754498 Score = 91.5 bits (100), Expect = 4e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 364111 GCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCTATATG 364170 || ||| |||| |||| ||||||||| || ||||||| ||||| || || || || ||| Sbjct 19123165 GCGCAGCAGCTTTGGTATGCCATCATCGAGTCGCAGACAGAGACGGGCACCCCGTACATG 19123106 Query 364171 TTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAAT 364223 | ||||||||||| || ||||| ||| ||| |||||| |||| || || || Sbjct 19123105 CTCTACAAAGATTCCTGTAACCGGAAGAGCAATCAGCAGAACCTGGGAACCAT 19123053 >seq15 Length=38784467 Score = 86.0 bits (94), Expect = 2e-11 Identities = 122/167 (73%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 111390 ACAAATGCAAATGAACTTGCAGCAAAAAATGTAAAAATTTGGGATGGAAATGGATCACGT 111449 ||||||||||| ||||| || | || || || || ||||||| ||||| || || Sbjct 20809733 ACAAATGCAAAAGAACTGTCATCCAAGGGAGTGAAGATCTGGGATGCTAATGGGTCCCGA 20809674 Query 111450 GACTTTCTAGATTCAG-TTGGTCTTGTCGACAACGA--AGAAGGTGATCTCGGACCAGTT 111506 || ||||| || ||| |||| || || || ||| |||||| || || || |||||| Sbjct 20809673 GATTTTCTCGA--CAGCTTGGGATTCTCTGCA-CGACAAGAAGGGGACCTGGGCCCAGTT 20809617 Query 111507 TACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCATGCA 111553 || || || || ||| | || ||||| |||||||||||| ||||| Sbjct 20809616 TATGGTTTCCAGTGGAGGCATTTTGGGGCAGACTACAAAGATATGCA 20809570 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303171611922236