Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_007921.1
Length=147544
Score E
Sequences producing significant alignments: (Bits) Value
seq3 109 5e-19
seq116 107 2e-18
seq7 98.7 9e-16
seq58 95.1 1e-14
seq93 87.8 2e-12
seq57 87.8 2e-12
seq73 84.2 2e-11
>seq3
Length=68754498
Score = 109 bits (120), Expect = 5e-19
Identities = 98/123 (80%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734
||| || || | |||||| ||||||||||||||||||||||| || |||||||| || ||
Sbjct 19123022 TACTATTTCTGTGCACAAGTTGCTACATTTGATGGTTCCCAGGTTCTGCTGATTGCTCTT 19123081
Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCAC 145794
|| ||| || | || ||||||||||||||||| ||| ||||| ||||| ||| |
Sbjct 19123082 CCGGTTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTCTGTCTGCGACTCGAT 19123141
Query 145795 GAT 145797
|||
Sbjct 19123142 GAT 19123144
Score = 84.2 bits (92), Expect = 2e-11
Identities = 159/233 (68%), Gaps = 1/233 (0%)
Strand=Plus/Plus
Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061
|||| |||||| |||| |||| ||| | || | ||| ||||| || || |||||||||
Sbjct 7045125 ATGATGCCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAA 7045184
Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121
|| | ||||| ||||| ||||| ||||| ||| || | |||||||||||
Sbjct 7045185 TCAGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCT 7045244
Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181
|| || || ||||| ||||| ||| || ||||| | ||| | || || |||
Sbjct 7045245 GGTGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGT 7045304
Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | || | ||| | ||| || || || || || || || | || |||||
Sbjct 7045305 TCAACCTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCAT 7045357
>seq116
Length=7179089
Score = 107 bits (118), Expect = 2e-18
Identities = 160/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| | | ||| ||||| | || | ||| |||||||| || |||||||| || |
Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| |||||| || || ||||||||||| || |||| | | ||||||||| || |||
Sbjct 4848424 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4848483
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|| || |||||||| ||| || ||||| | ||| | || || ||| ||| |
Sbjct 4848484 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4848543
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | ||| | ||| || ||||| || || || || || ||||||||
Sbjct 4848544 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4848590
>seq7
Length=50527172
Score = 98.7 bits (108), Expect = 9e-16
Identities = 158/227 (70%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | | ||| || | ||| | ||| |||||||||||||| ||||| || |
Sbjct 41286042 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGAC 41286101
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || ||| || || || ||||| || || |||| || | |||||| || |||||
Sbjct 41286102 AAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGA 41286161
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|||||||| || || ||| || ||| | | || | ||| || | || ||
Sbjct 41286162 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCC 41286221
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| ||| | ||| || || || || ||||| ||||||||||||||
Sbjct 41286222 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268
>seq58
Length=14941408
Score = 95.1 bits (104), Expect = 1e-14
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | | ||| || | ||| | ||| |||| ||||||||| ||||| || |
Sbjct 5525678 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGAC 5525737
Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127
| || ||| || || || ||||| || || |||| || | |||||| || |||||
Sbjct 5525738 AAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGA 5525797
Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187
|||||||| || || ||| || ||| | | || | ||| || | || || |
Sbjct 5525798 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 5525857
Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|||| || | ||| || || || || ||||| ||||||||||||||
Sbjct 5525858 TCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904
>seq93
Length=9247444
Score = 87.8 bits (96), Expect = 2e-12
Identities = 158/231 (68%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067
||||| || | | ||| || | ||| | ||| |||||||||||||| ||||| || |
Sbjct 8914034 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGAC 8914093
Query 131068 ATGGTGCGCGAGTCCTCT----AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123
| || ||| || || || ||||| || || |||| || | |||||| || ||
Sbjct 8914094 AAAGTACGCCCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGG 8914153
Query 131124 AGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTC 131183
||| |||||||| || || ||| || ||| | | || | ||| || | || ||
Sbjct 8914154 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTC 8914213
Query 131184 GATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
| |||| || | ||| || || || || ||||| ||||||||||||||
Sbjct 8914214 AACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264
>seq57
Length=15126812
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/136 (74%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065
||||||| | | ||| || || | || | ||| ||||| || || |||||||||||
Sbjct 1409833 AGCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAG 1409774
Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125
| ||||| || || ||||||||||| ||| |||| | |||||||||||| || |
Sbjct 1409773 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGG 1409714
Query 131126 GGATTCCTTCTTTGTC 131141
|||| ||||| |||||
Sbjct 1409713 GGATGCCTTCCTTGTC 1409698
>seq73
Length=12918409
Score = 84.2 bits (92), Expect = 2e-11
Identities = 160/233 (69%), Gaps = 2/233 (1%)
Strand=Plus/Minus
Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061
|||| |||||||| || |||| ||| | || | ||| ||||| || || |||| ||||
Sbjct 707569 ATGATGCCACCGCACAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAA 707511
Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121
|| | ||||| ||||| |||| ||||| ||| | || | |||||||||||
Sbjct 707510 TCAGAGAGAGTGCGGCCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCT 707451
Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181
||||| || ||||| ||||| ||| || ||||| | ||| | || || |||
Sbjct 707450 GGAGGAATGCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGT 707391
Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234
|| | | | ||| | |||||| || || || || || || || || |||||
Sbjct 707390 TCAACCTGTAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 707338
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 471948500056320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |