Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq3 109 5e-19 seq116 107 2e-18 seq7 98.7 9e-16 seq58 95.1 1e-14 seq93 87.8 2e-12 seq57 87.8 2e-12 seq73 84.2 2e-11 >seq3 Length=68754498 Score = 109 bits (120), Expect = 5e-19 Identities = 98/123 (80%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 145675 TACGATCTCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTT 145734 ||| || || | |||||| ||||||||||||||||||||||| || |||||||| || || Sbjct 19123022 TACTATTTCTGTGCACAAGTTGCTACATTTGATGGTTCCCAGGTTCTGCTGATTGCTCTT 19123081 Query 145735 CCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCAC 145794 || ||| || | || ||||||||||||||||| ||| ||||| ||||| ||| | Sbjct 19123082 CCGGTTACAGGAATCTTTGTAGAGCATGTACGGGGTGCCCGTCTCTGTCTGCGACTCGAT 19123141 Query 145795 GAT 145797 ||| Sbjct 19123142 GAT 19123144 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||| |||| |||| ||| | || | ||| ||||| || || ||||||||| Sbjct 7045125 ATGATGCCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAA 7045184 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || | ||||| ||||| ||||| ||||| ||| || | ||||||||||| Sbjct 7045185 TCAGAGAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCT 7045244 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 || || || ||||| ||||| ||| || ||||| | ||| | || || ||| Sbjct 7045245 GGTGGAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGT 7045304 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| | ||| || || || || || || || | || ||||| Sbjct 7045305 TCAACCTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCAT 7045357 >seq116 Length=7179089 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | | ||| ||||| | || | ||| |||||||| || |||||||| || | Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| || |||| | | ||||||||| || ||| Sbjct 4848424 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4848483 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || ||||| | ||| | || || ||| ||| | Sbjct 4848484 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4848543 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| || || || || || |||||||| Sbjct 4848544 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCAT 4848590 >seq7 Length=50527172 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | ||| || | ||| | ||| |||||||||||||| ||||| || | Sbjct 41286042 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGAC 41286101 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| || || || ||||| || || |||| || | |||||| || ||||| Sbjct 41286102 AAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGA 41286161 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||| || | || || Sbjct 41286162 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCC 41286221 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| ||| | ||| || || || || ||||| |||||||||||||| Sbjct 41286222 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268 >seq58 Length=14941408 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | ||| || | ||| | ||| |||| ||||||||| ||||| || | Sbjct 5525678 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGAC 5525737 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| || || || ||||| || || |||| || | |||||| || ||||| Sbjct 5525738 AAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGA 5525797 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| || || ||| || ||| | | || | ||| || | || || | Sbjct 5525798 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 5525857 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || || || || ||||| |||||||||||||| Sbjct 5525858 TCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904 >seq93 Length=9247444 Score = 87.8 bits (96), Expect = 2e-12 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | | ||| || | ||| | ||| |||||||||||||| ||||| || | Sbjct 8914034 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGAC 8914093 Query 131068 ATGGTGCGCGAGTCCTCT----AGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGG 131123 | || ||| || || || ||||| || || |||| || | |||||| || || Sbjct 8914094 AAAGTACGCCCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGG 8914153 Query 131124 AGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTC 131183 ||| |||||||| || || ||| || ||| | | || | ||| || | || || Sbjct 8914154 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTC 8914213 Query 131184 GATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 | |||| || | ||| || || || || ||||| |||||||||||||| Sbjct 8914214 AACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264 >seq57 Length=15126812 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 131006 AGCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGC 131065 ||||||| | | ||| || || | || | ||| ||||| || || ||||||||||| Sbjct 1409833 AGCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAG 1409774 Query 131066 TCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAG 131125 | ||||| || || ||||||||||| ||| |||| | |||||||||||| || | Sbjct 1409773 AAAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGG 1409714 Query 131126 GGATTCCTTCTTTGTC 131141 |||| ||||| ||||| Sbjct 1409713 GGATGCCTTCCTTGTC 1409698 >seq73 Length=12918409 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/233 (69%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 131003 ATGA-GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAA 131061 |||| |||||||| || |||| ||| | || | ||| ||||| || || |||| |||| Sbjct 707569 ATGATGCCACCGCACAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAA 707511 Query 131062 TCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCC 131121 || | ||||| ||||| |||| ||||| ||| | || | ||||||||||| Sbjct 707510 TCAGAGAGAGTGCGGCCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCT 707451 Query 131122 GGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGAC 131181 ||||| || ||||| ||||| ||| || ||||| | ||| | || || ||| Sbjct 707450 GGAGGAATGCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGT 707391 Query 131182 TCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | | | ||| | |||||| || || || || || || || || ||||| Sbjct 707390 TCAACCTGTAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCAT 707338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471948500056320