Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq116 127 2e-24 >seq116 Length=7179089 Score = 127 bits (140), Expect = 2e-24 Identities = 169/233 (73%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| |||| || | || |||| ||||| ||||||||||| || ||||||||||| | Sbjct 4848363 CCCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 4848422 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 || ||| | | || |||| || ||||| ||| | || |||| ||| ||||| || Sbjct 4848423 CAAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGG 4848482 Query 16828 CACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCC 16885 | |||||||||||| || ||||| ||| || | | | ||||| | ||||||| Sbjct 4848483 GATGCCCTCTTTGTCCTGGATCTTTGC--CTTGACGTTCTCGATGGTGTCACTGGGCTCC 4848540 Query 16886 GTTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATTTT 16938 |||| ||||||||| || |||||||| || || ||||| |||||||| || Sbjct 4848541 ACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTT 4848593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405034196465020