Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_008168.1
Length=104710
Score E
Sequences producing significant alignments: (Bits) Value
seq4 109 4e-19
seq86 104 2e-17
seq58 98.7 7e-16
seq7 98.7 7e-16
seq3 98.7 7e-16
seq47 95.1 8e-15
seq93 91.5 1e-13
seq44 87.8 1e-12
seq31 86.0 4e-12
>seq4
Length=53591480
Score = 109 bits (120), Expect = 4e-19
Identities = 81/95 (85%), Gaps = 5/95 (5%)
Strand=Plus/Minus
Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956
|||||||||||||||||||||||||| || ||||| || ||||| || |||||| |
Sbjct 9368109 AAGCCCGTTCCCTTGGCTGTGGTTTCACTGGATAGGAGGTAGGGACAGTGGAAATCTCAT 9368050
Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991
| |||| ||||||| ||||||||||||||||||||
Sbjct 9368049 TCATCCATTCATGCTCGTCACTAATTAGATGACGA 9368015
>seq86
Length=10307599
Score = 104 bits (114), Expect = 2e-17
Identities = 200/293 (68%), Gaps = 4/293 (1%)
Strand=Plus/Plus
Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTG--CGCCAAGGTCGAGGGTAAGGGAAACGGT 6257
|||||| | ||||||||||| || |||| || | ||| ||||| || ||||| ||
Sbjct 2920653 GTTCTATCCTTACAAAATGCCCCG--TCTGATTGCGATGGTTGAGGGCAAAGGAAATGGA 2920710
Query 6258 ATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACC 6317
|| || || || || ||||||||| ||| | || |||| ||| || ||| | ||
Sbjct 2920711 ATCAAGACAGTTATAGTCAACATGGTTGATGCTGCAAAGGTGCTTTATCGGCCTCCAACG 2920770
Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377
|| || || |||||||| || || || || || || |||| ||||||||| || ||
Sbjct 2920771 TATCCCACCAAATATTTTGGTTGGGAGCTGGGAGCATAGACCCAGTTTGATGTTAAGAAT 2920830
Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437
|| | | ||| || || ||||| ||| | | | |||||| ||| | | || ||
Sbjct 2920831 GACCCTTCCATTGTCAATGGATCTCATGAGGCAAATAGGCTGCAAGACATGTTGGAGGGG 2920890
Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490
|| ||| || ||||| || |||| || || || || || || || || ||
Sbjct 2920891 TTCATTAAAAAATTTGTTCTCTGTCCTGAGTGTGAGAATCCTGAAACAGATCT 2920943
>seq58
Length=14941408
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
|||||| ||| || ||||||||||||||| ||||||||| ||| | || || | |||
Sbjct 5525701 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 5525760
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
||||| ||||| || | | || ||||| | || | ||||| || ||| || ||
Sbjct 5525761 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 5525820
Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293
||| ||||| | | ||| || |||||| || | || || || || |||||
Sbjct 5525821 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGT 5525880
Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317
| |||||||||||| ||||||||
Sbjct 5525881 AAGGGTTTTCACGAAAATCTGCAT 5525904
>seq7
Length=50527172
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Plus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
|||||| ||| |||||||||||||||||| ||||||||| ||| | || || | |||
Sbjct 41286065 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 41286124
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
||||| ||||| || | | || ||||| | || | ||||| || ||| || ||
Sbjct 41286125 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 41286184
Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293
||| ||||| | | ||| || |||| | || | || || || || |||||
Sbjct 41286185 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGT 41286244
Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317
| |||||||||||| ||||||||
Sbjct 41286245 AAGGGTTTTCACGAAAATCTGCAT 41286268
>seq3
Length=68754498
Score = 98.7 bits (108), Expect = 7e-16
Identities = 144/204 (71%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
|||||| ||| || ||||||||||||||| ||||||||| || | || || | |||
Sbjct 46699753 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGAACTCCCATCTTCCAGTTG 46699694
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
||||| ||||| || || | || ||||| | || | |||||||| ||| || ||
Sbjct 46699693 CTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTT 46699634
Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293
||| ||||| | | ||| || |||||| || | || || || || |||||
Sbjct 46699633 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCCGT 46699574
Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317
| ||||||||| || ||||||||
Sbjct 46699573 AAGGGTTTTCACAAAAATCTGCAT 46699550
Score = 82.4 bits (90), Expect = 5e-11
Identities = 156/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150
||||| | || |||| ||||| || || ||| ||| || || || |||||||||||
Sbjct 7045131 CCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAG 7045190
Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210
| | || | || || | ||||| || || | ||| || || || || || | ||
Sbjct 7045191 AGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGA 7045250
Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270
| |||||| ||||| || || ||| ||||||| || || || | ||||||
Sbjct 7045251 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACC 7045310
Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320
|||| || || || || ||||||| ||| ||||| | || ||||| ||
Sbjct 7045311 TCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCATTTT 7045360
>seq47
Length=17581924
Score = 95.1 bits (104), Expect = 8e-15
Identities = 67/77 (87%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006
|||||||||||||||||||||||||||||||| | |||||||||| |||| ||||||
Sbjct 16122997 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATGGGTCTCTT 16123056
Query 20007 GGTAATATTTAGCCTTA 20023
| | ||||||||||||
Sbjct 16123057 GCTGGTATTTAGCCTTA 16123073
>seq93
Length=9247444
Score = 91.5 bits (100), Expect = 1e-13
Identities = 145/208 (70%), Gaps = 4/208 (2%)
Strand=Plus/Plus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGT----CGTCTA 38169
|||||| ||| |||||||||||||||||| ||||||||| ||| | | | || |
Sbjct 8914057 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCTTCCA 8914116
Query 38170 ATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAA 38229
||| ||||| ||||| || | | || ||||| | || | ||||| || ||| |
Sbjct 8914117 GTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 8914176
Query 38230 TTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTAC 38289
| || ||| ||||| | | ||| || |||||| || | || || || || |
Sbjct 8914177 TCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCC 8914236
Query 38290 CCGTCAAGGTTTTCACGAATATCTGCAT 38317
|||| | |||||||||||| ||||||||
Sbjct 8914237 CCGTAAGGGTTTTCACGAAAATCTGCAT 8914264
>seq44
Length=18557718
Score = 87.8 bits (96), Expect = 1e-12
Identities = 143/204 (70%), Gaps = 3/204 (1%)
Strand=Plus/Plus
Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173
|||||| ||| ||||||| |||||||||| ||||||||| | | | || || | |||
Sbjct 841695 ATGAAGGGTGGACTCCTTT-GAATATTGTAGTCAGACAAAGTATGCCCATCTTCAAGTTG 841753
Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233
||||| ||||| || || | || ||||| | || | ||||| || ||| || ||
Sbjct 841754 CTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 841813
Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293
||| ||||| | | ||| || |||||| || || || || || || ||| |
Sbjct 841814 GGCCTTTACATTTTCG--AGTGTCCGAGGGTTCAACCTCGAACGTGATGGTCTTCCCCTT 841871
Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317
| ||||||||| || ||||||||
Sbjct 841872 AAGGGTTTTCACAAAAATCTGCAT 841895
>seq31
Length=29319519
Score = 86.0 bits (94), Expect = 4e-12
Identities = 140/202 (69%), Gaps = 0/202 (0%)
Strand=Plus/Minus
Query 38116 GAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTT 38175
|||| ||| ||| |||||||||||||| ||||||||| |||| | || || | ||| |
Sbjct 3469687 GAAGGGTGGACTCTTTTTGAATATTGTAGTCAGACAAAGCACGCCCATCTTCCAGTTGCT 3469628
Query 38176 TTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTT 38235
|| | ||||| || | | || ||||| | || | ||||| || ||| || ||
Sbjct 3469627 TTGCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGG 3469568
Query 38236 GCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCA 38295
||| ||||| | | ||| || |||||| | | || || || || ||| | |
Sbjct 3469567 CCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGTCTTCCCCATAA 3469508
Query 38296 AGGTTTTCACGAATATCTGCAT 38317
|||||||||||| ||||||||
Sbjct 3469507 GGGTTTTCACGAAAATCTGCAT 3469486
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 334902712522238
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |