Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq4 109 4e-19 seq86 104 2e-17 seq58 98.7 7e-16 seq7 98.7 7e-16 seq3 98.7 7e-16 seq47 95.1 8e-15 seq93 91.5 1e-13 seq44 87.8 1e-12 seq31 86.0 4e-12 >seq4 Length=53591480 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||| || ||||| || ||||| || |||||| | Sbjct 9368109 AAGCCCGTTCCCTTGGCTGTGGTTTCACTGGATAGGAGGTAGGGACAGTGGAAATCTCAT 9368050 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| |||||||||||||||||||| Sbjct 9368049 TCATCCATTCATGCTCGTCACTAATTAGATGACGA 9368015 >seq86 Length=10307599 Score = 104 bits (114), Expect = 2e-17 Identities = 200/293 (68%), Gaps = 4/293 (1%) Strand=Plus/Plus Query 6200 GTTCTACCGCTACAAAATGCCGCGCATCTG--CGCCAAGGTCGAGGGTAAGGGAAACGGT 6257 |||||| | ||||||||||| || |||| || | ||| ||||| || ||||| || Sbjct 2920653 GTTCTATCCTTACAAAATGCCCCG--TCTGATTGCGATGGTTGAGGGCAAAGGAAATGGA 2920710 Query 6258 ATTAAAACCGTCATTGTCAACATGCCTGAAGTCGCTAAGGCGCTCGGACGCCCTGCCACC 6317 || || || || || ||||||||| ||| | || |||| ||| || ||| | || Sbjct 2920711 ATCAAGACAGTTATAGTCAACATGGTTGATGCTGCAAAGGTGCTTTATCGGCCTCCAACG 2920770 Query 6318 TACCCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAAC 6377 || || || |||||||| || || || || || || |||| ||||||||| || || Sbjct 2920771 TATCCCACCAAATATTTTGGTTGGGAGCTGGGAGCATAGACCCAGTTTGATGTTAAGAAT 2920830 Query 6378 GAGCGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGC 6437 || | | ||| || || ||||| ||| | | | |||||| ||| | | || || Sbjct 2920831 GACCCTTCCATTGTCAATGGATCTCATGAGGCAAATAGGCTGCAAGACATGTTGGAGGGG 2920890 Query 6438 TTTATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGACCGAGCT 6490 || ||| || ||||| || |||| || || || || || || || || || Sbjct 2920891 TTCATTAAAAAATTTGTTCTCTGTCCTGAGTGTGAGAATCCTGAAACAGATCT 2920943 >seq58 Length=14941408 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||| ||| || ||||||||||||||| ||||||||| ||| | || || | ||| Sbjct 5525701 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 5525760 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||| ||||| || | | || ||||| | || | ||||| || ||| || || Sbjct 5525761 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 5525820 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||| | | ||| || |||||| || | || || || || ||||| Sbjct 5525821 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGT 5525880 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 | |||||||||||| |||||||| Sbjct 5525881 AAGGGTTTTCACGAAAATCTGCAT 5525904 >seq7 Length=50527172 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||| ||| |||||||||||||||||| ||||||||| ||| | || || | ||| Sbjct 41286065 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 41286124 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||| ||||| || | | || ||||| | || | ||||| || ||| || || Sbjct 41286125 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 41286184 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||| | | ||| || |||| | || | || || || || ||||| Sbjct 41286185 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGT 41286244 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 | |||||||||||| |||||||| Sbjct 41286245 AAGGGTTTTCACGAAAATCTGCAT 41286268 >seq3 Length=68754498 Score = 98.7 bits (108), Expect = 7e-16 Identities = 144/204 (71%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||| ||| || ||||||||||||||| ||||||||| || | || || | ||| Sbjct 46699753 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGAACTCCCATCTTCCAGTTG 46699694 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||| ||||| || || | || ||||| | || | |||||||| ||| || || Sbjct 46699693 CTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTT 46699634 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||| | | ||| || |||||| || | || || || || ||||| Sbjct 46699633 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCCGT 46699574 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 | ||||||||| || |||||||| Sbjct 46699573 AAGGGTTTTCACAAAAATCTGCAT 46699550 Score = 82.4 bits (90), Expect = 5e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || |||| ||||| || || ||| ||| || || || ||||||||||| Sbjct 7045131 CCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAG 7045190 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | | || | || || | ||||| || || | ||| || || || || || | || Sbjct 7045191 AGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGA 7045250 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | |||||| ||||| || || ||| ||||||| || || || | |||||| Sbjct 7045251 ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACC 7045310 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATGTT 38320 |||| || || || || ||||||| ||| ||||| | || ||||| || Sbjct 7045311 TCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCATTTT 7045360 >seq47 Length=17581924 Score = 95.1 bits (104), Expect = 8e-15 Identities = 67/77 (87%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||| | |||||||||| |||| |||||| Sbjct 16122997 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTTATGGTACTTGTTGACTATGGGTCTCTT 16123056 Query 20007 GGTAATATTTAGCCTTA 20023 | | |||||||||||| Sbjct 16123057 GCTGGTATTTAGCCTTA 16123073 >seq93 Length=9247444 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/208 (70%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGT----CGTCTA 38169 |||||| ||| |||||||||||||||||| ||||||||| ||| | | | || | Sbjct 8914057 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCTTCCA 8914116 Query 38170 ATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAA 38229 ||| ||||| ||||| || | | || ||||| | || | ||||| || ||| | Sbjct 8914117 GTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 8914176 Query 38230 TTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTAC 38289 | || ||| ||||| | | ||| || |||||| || | || || || || | Sbjct 8914177 TCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCC 8914236 Query 38290 CCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | |||||||||||| |||||||| Sbjct 8914237 CCGTAAGGGTTTTCACGAAAATCTGCAT 8914264 >seq44 Length=18557718 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/204 (70%), Gaps = 3/204 (1%) Strand=Plus/Plus Query 38114 ATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTG 38173 |||||| ||| ||||||| |||||||||| ||||||||| | | | || || | ||| Sbjct 841695 ATGAAGGGTGGACTCCTTT-GAATATTGTAGTCAGACAAAGTATGCCCATCTTCAAGTTG 841753 Query 38174 TTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTT 38233 ||||| ||||| || || | || ||||| | || | ||||| || ||| || || Sbjct 841754 CTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 841813 Query 38234 TTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGT 38293 ||| ||||| | | ||| || |||||| || || || || || || ||| | Sbjct 841814 GGCCTTTACATTTTCG--AGTGTCCGAGGGTTCAACCTCGAACGTGATGGTCTTCCCCTT 841871 Query 38294 CAAGGTTTTCACGAATATCTGCAT 38317 | ||||||||| || |||||||| Sbjct 841872 AAGGGTTTTCACAAAAATCTGCAT 841895 >seq31 Length=29319519 Score = 86.0 bits (94), Expect = 4e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 38116 GAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTT 38175 |||| ||| ||| |||||||||||||| ||||||||| |||| | || || | ||| | Sbjct 3469687 GAAGGGTGGACTCTTTTTGAATATTGTAGTCAGACAAAGCACGCCCATCTTCCAGTTGCT 3469628 Query 38176 TTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTT 38235 || | ||||| || | | || ||||| | || | ||||| || ||| || || Sbjct 3469627 TTGCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGG 3469568 Query 38236 GCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTACCCGTCA 38295 ||| ||||| | | ||| || |||||| | | || || || || ||| | | Sbjct 3469567 CCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGTCTTCCCCATAA 3469508 Query 38296 AGGTTTTCACGAATATCTGCAT 38317 |||||||||||| |||||||| Sbjct 3469507 GGGTTTTCACGAAAATCTGCAT 3469486 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334902712522238