Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_008291.1
Length=198050
Score E
Sequences producing significant alignments: (Bits) Value
seq57 257 2e-63
seq6 183 4e-41
seq3 131 2e-25
seq175 118 1e-21
seq83 105 8e-18
seq56 102 1e-16
seq63 82.4 1e-10
>seq57
Length=15126812
Score = 257 bits (284), Expect = 2e-63
Identities = 606/904 (67%), Gaps = 36/904 (4%)
Strand=Plus/Minus
Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414
||||| |||||||| | |||| ||||| || | || || | || ||||| || |||
Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261
Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474
|||| ||| ||| | |||||||| || ||||| || || | |||| || |||||
Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201
Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCA--- 32531
|||| ||| || | || ||||| |||||||| || | | | | ||||| |
Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144
Query 32532 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAG 32591
||||||||||| || | || || || | ||| | || || || || | ||| || |
Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084
Query 32592 ACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC----GGTGGATACAATAAATG 32647
|| || | | | ||| || | || || |||| ||| || | | ||
Sbjct 10750083 ACAGCAT---TGACAATT-ATTTCCTTGACTCACTACTCTAATGGTTTGTATACCAGGTG 10750028
Query 32648 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 32707
|| |||| || || | ||||| || |||| |||||| |||| |||||| | || |
Sbjct 10750027 CTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACT 10749969
Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767
|||||| ||||| || ||||| || || | || || ||||||||||| || ||||| ||
Sbjct 10749968 GGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGA 10749909
Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827
||||||||| ||| ||| | || ||||| || | || |||||||| ||
Sbjct 10749908 ACCAGAAAAG---ATTTCTTTCGCAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGC 10749852
Query 32828 GCTGTCATGTATCCACTTTTGAGCCCA-------ATCGGCCTTCTTTTTTACACAAGGCA 32880
|| | ||||||| | | | || || |||||| || | ||||||||
Sbjct 10749851 -CT---CTTTATCCACAATCCAACACAGGGTCACGTCTGCCTTC---TTCATACAAGGCA 10749799
Query 32881 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 32940
| | || || ||||| ||||| ||| |||| || |||||| || | ||||
Sbjct 10749798 TCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAA 10749739
Query 32941 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000
| | ||||| ||||| | ||||| ||||| || ||||| ||||| || || ||||| |
Sbjct 10749738 TAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAAC 10749679
Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTA 33060
| | || || ||||| || |||||| | |||||| || | | |||||||| ||||
Sbjct 10749678 AGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTA 10749619
Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA--ATATTTTTCGTCTGG 33118
| || |||||||| ||||| || |||| || | |||||| || |||||| || ||
Sbjct 10749618 TACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGG 10749559
Query 33119 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 33178
| || | ||| | | | || || || | ||| || | || ||||||| ||
Sbjct 10749558 CTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAA 10749499
Query 33179 TGATGCCTCTGCCTTT-TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 33237
|| ||| ||| |||| || ||||| | |||||| ||||| ||||| || ||||| ||||
Sbjct 10749498 GGAGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440
Query 33238 CAAA 33241
||||
Sbjct 10749439 CAAA 10749436
>seq6
Length=52350410
Score = 183 bits (202), Expect = 4e-41
Identities = 311/448 (69%), Gaps = 6/448 (1%)
Strand=Plus/Minus
Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 32702
|| || || ||||||| || || ||||| |||||||||||||| ||| |||||| |
Sbjct 1187168 AAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGC 1187109
Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762
|| |||||||| ||||| || ||||| || || | || | ||||| ||| | | |||
Sbjct 1187108 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCA 1187049
Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 32822
|| || |||||||||| |||||||| || || |||| || | | |||||||
Sbjct 1187048 AAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTG 1186989
Query 32823 C-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 32879
|| | || ||| ||||| |||| || |||| ||| ||| | ||
Sbjct 1186988 GTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCTTC---ACAGGAAGC 1186932
Query 32880 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 32939
|| || || || ||||| | || | | |||| || |||||||| | | || |||
Sbjct 1186931 ATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCA 1186872
Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999
| | ||||| ||||| || ||| | |||||||||||||| |||| || || |||
Sbjct 1186871 GTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAA 1186812
Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059
|| | ||| || ||||| || |||||| | ||||| || || || ||||||||||||
Sbjct 1186811 CAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACT 1186752
Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCA 33087
| | |||||||| |||||||| ||||
Sbjct 1186751 GTGTCATCACTGGCAGCAAAAAAAGCCA 1186724
>seq3
Length=68754498
Score = 131 bits (144), Expect = 2e-25
Identities = 111/137 (81%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251
|| ||||||||||| ||||| ||||| ||||| || || |||||||| || ||||| |
Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064
Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311
||||||||||| |||| || ||||||||||| ||||||||||| || || | | ||||
Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124
Query 62312 CTATTTCTAAGACCGTA 62328
|||||||| | ||| ||
Sbjct 19114125 CTATTTCTGATACCATA 19114141
Score = 91.5 bits (100), Expect = 2e-13
Identities = 114/154 (74%), Gaps = 2/154 (1%)
Strand=Plus/Plus
Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126
|| |||||||||||| |||||||| |||||||| || || | || ||||| | || |
Sbjct 19125208 CTCCACTCGTTTCATGAAGAGATCTGGAATCCACAGGGCAAAGAAAAGATCCCGGGCACG 19125267
Query 63127 ATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63185
||||| || || ||||| ||||| |||||| || || ||| | | || || | ||||
Sbjct 19125268 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCTAAGTGCC 19125326
Query 63186 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219
| || |||| ||| || || | ||||||||||
Sbjct 19125327 AAGGCTCCAGGTAAATAGCAAATGCTCCAGGCCG 19125360
>seq175
Length=2612143
Score = 118 bits (130), Expect = 1e-21
Identities = 262/393 (67%), Gaps = 4/393 (1%)
Strand=Plus/Minus
Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 32909
|||||||| || || || || ||| | ||| ||| || || | ||||| | | | | |
Sbjct 1473349 GCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTAAATAAAAACTCT 1473290
Query 32910 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969
| | || |||| | | || | ||| |||| | || || || || || |||
Sbjct 1473289 CTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATCTCTGAGTGAGCA 1473230
Query 32970 TTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTA 33029
|| || ||| || | ||| || ||||| || |||||| | || || || ||
Sbjct 1473229 TTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACGTGCACGTC---- 1473174
Query 33030 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33089
| || || ||| | ||||||||||| || ||| | || |||| ||||||||| || ||
Sbjct 1473173 CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCAAAAAAGGCTAAG 1473114
Query 33090 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33149
| || ||||||| || | |||||| | || ||||| | | || ||| ||
Sbjct 1473113 ATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAAGGGAGATCCTTT 1473054
Query 33150 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 33209
|||| || | || || ||||||| || |||| || || | |||||||| |||||
Sbjct 1473053 GATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTATACATCTTCCAA 1472994
Query 33210 ATGTCATGATATTGAATTGGAAAAATAACAAAT 33242
|| ||| | || || ||||||||||| ||||||
Sbjct 1472993 ATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961
>seq83
Length=10591344
Score = 105 bits (116), Expect = 8e-18
Identities = 96/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Plus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| |||| |||||| | || |||||||| ||||| || ||||| || || || || |
Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||| |
Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277
Query 32803 C 32803
|
Sbjct 7356278 C 7356278
>seq56
Length=15139244
Score = 102 bits (112), Expect = 1e-16
Identities = 95/121 (79%), Gaps = 0/121 (0%)
Strand=Plus/Minus
Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742
|||| ||||| || || | || ||||||||||||||||||||||| || || | ||| |
Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221
Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802
| ||||| ||||||| ||||| || || || ||||| | ||||| || || |||||||
Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161
Query 32803 C 32803
|
Sbjct 9265160 C 9265160
>seq63
Length=13740492
Score = 82.4 bits (90), Expect = 1e-10
Identities = 144/208 (69%), Gaps = 5/208 (2%)
Strand=Plus/Minus
Query 30453 TGTACTTCTTTCAGTTCTGGATAATATATA--CGTTGATAGATTAGCTGAGCTATTCTAT 30510
|| ||||||| | ||||||||| | | | |||| | | || ||||| || || | ||
Sbjct 12332013 TGAACTTCTTCTATGTCTGGATAAAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGAT 12331954
Query 30511 CCCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTC 30570
| ||| ||||| | || | ||| ||| ||||| | | | || | |||||
Sbjct 12331953 CGCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAACAATACAAAACCAACATTTC 12331894
Query 30571 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 30627
| ||||||||||| ||||| ||||| |||||| |||||| | ||||| | || |
Sbjct 12331893 CTCTATAATCTTCATCTATAACACCAGCTCCTACATCAATGAAGTGTTTTACAGCCAAGC 12331834
Query 30628 CAGACCTAGGAGCTATTCTACCATAGCA 30655
|||| | ||||||| ||| ||||||||
Sbjct 12331833 CAGAGCGTGGAGCTACTCTTCCATAGCA 12331806
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 633545683480800
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