Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq57 257 2e-63 seq6 183 4e-41 seq3 131 2e-25 seq175 118 1e-21 seq83 105 8e-18 seq56 102 1e-16 seq63 82.4 1e-10 >seq57 Length=15126812 Score = 257 bits (284), Expect = 2e-63 Identities = 606/904 (67%), Gaps = 36/904 (4%) Strand=Plus/Minus Query 32355 GACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACCT 32414 ||||| |||||||| | |||| ||||| || | || || | || ||||| || ||| Sbjct 10750320 GACATCACTCCCATCCTCTGGTGCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCT 10750261 Query 32415 TCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAAtttttttAAAT 32474 |||| ||| ||| | |||||||| || ||||| || || | |||| || ||||| Sbjct 10750260 TCTAGTGAAATAATCTCCATGAAGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAA 10750201 Query 32475 CCCAATTCAGAAATCAATCTATCTGCGACAAATTCTATATATGTTTTCATCATTTCA--- 32531 |||| ||| || | || ||||| |||||||| || | | | | ||||| | Sbjct 10750200 CCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGT---TCTGCTTCATTAAAGTG 10750144 Query 32532 CAATTCATTCCTATAAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATAGAG 32591 ||||||||||| || | || || || | ||| | || || || || | ||| || | Sbjct 10750143 CAATTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTG 10750084 Query 32592 ACCGCGTCTGTTATAATAGATCTTACTGTTTCTTCACTC----GGTGGATACAATAAATG 32647 || || | | | ||| || | || || |||| ||| || | | || Sbjct 10750083 ACAGCAT---TGACAATT-ATTTCCTTGACTCACTACTCTAATGGTTTGTATACCAGGTG 10750028 Query 32648 TTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTT 32707 || |||| || || | ||||| || |||| |||||| |||| |||||| | || | Sbjct 10750027 CTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACT 10749969 Query 32708 GGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGA 32767 |||||| ||||| || ||||| || || | || || ||||||||||| || ||||| || Sbjct 10749968 GGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGA 10749909 Query 32768 TCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGC 32827 ||||||||| ||| ||| | || ||||| || | || |||||||| || Sbjct 10749908 ACCAGAAAAG---ATTTCTTTCGCAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGC 10749852 Query 32828 GCTGTCATGTATCCACTTTTGAGCCCA-------ATCGGCCTTCTTTTTTACACAAGGCA 32880 || | ||||||| | | | || || |||||| || | |||||||| Sbjct 10749851 -CT---CTTTATCCACAATCCAACACAGGGTCACGTCTGCCTTC---TTCATACAAGGCA 10749799 Query 32881 TTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAA 32940 | | || || ||||| ||||| ||| |||| || |||||| || | |||| Sbjct 10749798 TCCTTTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAA 10749739 Query 32941 TCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGC 33000 | | ||||| ||||| | ||||| ||||| || ||||| ||||| || || ||||| | Sbjct 10749738 TAAGGAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAAC 10749679 Query 33001 ATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTA 33060 | | || || ||||| || |||||| | |||||| || | | |||||||| |||| Sbjct 10749678 AGCGGGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTA 10749619 Query 33061 TTCCGTCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAA--ATATTTTTCGTCTGG 33118 | || |||||||| ||||| || |||| || | |||||| || |||||| || || Sbjct 10749618 TACCATCACTGGCAGCAAAGAAAGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGG 10749559 Query 33119 TGTTAGTTTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAA 33178 | || | ||| | | | || || || | ||| || | || ||||||| || Sbjct 10749558 CTTCAGGGCTTCCCAGTGCTGAACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAA 10749499 Query 33179 TGATGCCTCTGCCTTT-TTATACATATTCCAGATGTCATGATATTGAATTGGAAAAATAA 33237 || ||| ||| |||| || ||||| | |||||| ||||| ||||| || ||||| |||| Sbjct 10749498 GGAGGCC-CTGGCTTTCTTGTACATCTGCCAGATATCATGCTATTGCATAGGAAAGATAA 10749440 Query 33238 CAAA 33241 |||| Sbjct 10749439 CAAA 10749436 >seq6 Length=52350410 Score = 183 bits (202), Expect = 4e-41 Identities = 311/448 (69%), Gaps = 6/448 (1%) Strand=Plus/Minus Query 32643 AAATGTTTAAACATCAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAAT 32702 || || || ||||||| || || ||||| |||||||||||||| ||| |||||| | Sbjct 1187168 AAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGC 1187109 Query 32703 TCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA 32762 || |||||||| ||||| || ||||| || || | || | ||||| ||| | | ||| Sbjct 1187108 TCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCA 1187049 Query 32763 AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAA 32822 || || |||||||||| |||||||| || || |||| || | | ||||||| Sbjct 1187048 AAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTG 1186989 Query 32823 C-CGGCGCT--GTCATGTATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGC 32879 || | || ||| ||||| |||| || |||| ||| ||| | || Sbjct 1186988 GTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCCTTC---ACAGGAAGC 1186932 Query 32880 ATTGTCTCTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCA 32939 || || || || ||||| | || | | |||| || |||||||| | | || ||| Sbjct 1186931 ATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCA 1186872 Query 32940 ATCAAAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAG 32999 | | ||||| ||||| || ||| | |||||||||||||| |||| || || ||| Sbjct 1186871 GTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAA 1186812 Query 33000 CATCTAGCCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACT 33059 || | ||| || ||||| || |||||| | ||||| || || || |||||||||||| Sbjct 1186811 CAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACT 1186752 Query 33060 ATTCCGTCACTGGCTGCAAAAAACGCCA 33087 | | |||||||| |||||||| |||| Sbjct 1186751 GTGTCATCACTGGCAGCAAAAAAAGCCA 1186724 >seq3 Length=68754498 Score = 131 bits (144), Expect = 2e-25 Identities = 111/137 (81%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 62192 ACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACA 62251 || ||||||||||| ||||| ||||| ||||| || || |||||||| || ||||| | Sbjct 19114005 ACCTGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATG 19114064 Query 62252 GACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAA 62311 ||||||||||| |||| || ||||||||||| ||||||||||| || || | | |||| Sbjct 19114065 GACTCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAA 19114124 Query 62312 CTATTTCTAAGACCGTA 62328 |||||||| | ||| || Sbjct 19114125 CTATTTCTGATACCATA 19114141 Score = 91.5 bits (100), Expect = 2e-13 Identities = 114/154 (74%), Gaps = 2/154 (1%) Strand=Plus/Plus Query 63067 CTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCT 63126 || |||||||||||| |||||||| |||||||| || || | || ||||| | || | Sbjct 19125208 CTCCACTCGTTTCATGAAGAGATCTGGAATCCACAGGGCAAAGAAAAGATCCCGGGCACG 19125267 Query 63127 ATGTTCCTCGTTTCCTGTATTCTT-TTTAAGATCGAGGAACGCCATAATATCAGAATGCC 63185 ||||| || || ||||| ||||| |||||| || || ||| | | || || | |||| Sbjct 19125268 CTGTTCTTCCTTGCCTGTGTTCTTCTTTAAG-TCAAGAAACTCAAAGATGTCTAAGTGCC 19125326 Query 63186 ACGGTTCCAAGTATATGGCCATAACTCCAGGCCG 63219 | || |||| ||| || || | |||||||||| Sbjct 19125327 AAGGCTCCAGGTAAATAGCAAATGCTCCAGGCCG 19125360 >seq175 Length=2612143 Score = 118 bits (130), Expect = 1e-21 Identities = 262/393 (67%), Gaps = 4/393 (1%) Strand=Plus/Minus Query 32850 GCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAAAGAGATAGttt 32909 |||||||| || || || || ||| | ||| ||| || || | ||||| | | | | | Sbjct 1473349 GCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTAAATAAAAACTCT 1473290 Query 32910 ttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTTCCGAATGAATG 32969 | | || |||| | | || | ||| |||| | || || || || || ||| Sbjct 1473289 CTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATATCTCTGAGTGAGCA 1473230 Query 32970 TTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCTCGGTAATCTGTACTTCTGTA 33029 || || ||| || | ||| || ||||| || |||||| | || || || || Sbjct 1473229 TTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAACGTGCACGTC---- 1473174 Query 33030 CAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAAAAAACGCCAAT 33089 | || || ||| | ||||||||||| || ||| | || |||| ||||||||| || || Sbjct 1473173 CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTGCAAAAAAGGCTAAG 1473114 Query 33090 ACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCATTGATATCTTTA 33149 | || ||||||| || | |||||| | || ||||| | | || ||| || Sbjct 1473113 ATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTCCAGTAAGGGAGATCCTTT 1473054 Query 33150 GATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAG 33209 |||| || | || || ||||||| || |||| || || | |||||||| ||||| Sbjct 1473053 GATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGCTTATACATCTTCCAA 1472994 Query 33210 ATGTCATGATATTGAATTGGAAAAATAACAAAT 33242 || ||| | || || ||||||||||| |||||| Sbjct 1472993 ATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961 >seq83 Length=10591344 Score = 105 bits (116), Expect = 8e-18 Identities = 96/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| |||| |||||| | || |||||||| ||||| || ||||| || || || || | Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||| || ||||| || ||||||||||| |||||||| || || ||||| | Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277 Query 32803 C 32803 | Sbjct 7356278 C 7356278 >seq56 Length=15139244 Score = 102 bits (112), Expect = 1e-16 Identities = 95/121 (79%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 32683 CCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 32742 |||| ||||| || || | || ||||||||||||||||||||||| || || | ||| | Sbjct 9265280 CCTCATCTCTGCTGATGAGCTCATTGGAAAACGTGAGTCCGGGCATGAGCCCTCTCTTCT 9265221 Query 32743 TAAGCCAAAATATGGACGCAAATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAAGG 32802 | ||||| ||||||| ||||| || || || ||||| | ||||| || || ||||||| Sbjct 9265220 TTAGCCAGAATATGGCAGCAAACGACCCTGAGAAGAAGACCCCTTCCACAGCAGCAAAGG 9265161 Query 32803 C 32803 | Sbjct 9265160 C 9265160 >seq63 Length=13740492 Score = 82.4 bits (90), Expect = 1e-10 Identities = 144/208 (69%), Gaps = 5/208 (2%) Strand=Plus/Minus Query 30453 TGTACTTCTTTCAGTTCTGGATAATATATA--CGTTGATAGATTAGCTGAGCTATTCTAT 30510 || ||||||| | ||||||||| | | | |||| | | || ||||| || || | || Sbjct 12332013 TGAACTTCTTCTATGTCTGGATAAAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGAT 12331954 Query 30511 CCCCCGTATTTACATTGAATGTACATTTTCCATTATTAATAAGAATGACTCCTATATTTC 30570 | ||| ||||| | || | ||| ||| ||||| | | | || | ||||| Sbjct 12331953 CGCCCTGTTTTACTTCAAACTTCTCTTTCCCAAAATTAAACAATACAAAACCAACATTTC 12331894 Query 30571 CCCTATAATCTTCGTCTATTACACCGCCTCCTATATCAAT---GCCTTTTAGGGACAGAC 30627 | ||||||||||| ||||| ||||| |||||| |||||| | ||||| | || | Sbjct 12331893 CTCTATAATCTTCATCTATAACACCAGCTCCTACATCAATGAAGTGTTTTACAGCCAAGC 12331834 Query 30628 CAGACCTAGGAGCTATTCTACCATAGCA 30655 |||| | ||||||| ||| |||||||| Sbjct 12331833 CAGAGCGTGGAGCTACTCTTCCATAGCA 12331806 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633545683480800