Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq116 123 2e-23
seq58 87.8 2e-12
seq7 87.8 2e-12
seq3 82.4 7e-11
>seq116
Length=7179089
Score = 123 bits (136), Expect = 2e-23
Identities = 171/238 (72%), Gaps = 1/238 (0%)
Strand=Plus/Minus
Query 24988 AAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAG 25047
||||| ||| | |||| || ||||| ||||| ||||||| || ||||||| | || |
Sbjct 4848600 AAAACAGAAGA-TGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 4848542
Query 25048 TGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTC 25107
||||| | |||||| |||||| | ||| ||| ||| |||||||| || || |
Sbjct 4848541 TGGAGCCCAGTGACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCC 4848482
Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167
| |||||||| ||| || | || ||||||||||| || | ||||||| ||||| ||
Sbjct 4848481 CCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGT 4848422
Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| ||||| || || || || ||||| || || | ||||| | || ||||| ||
Sbjct 4848421 CTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGG 4848364
>seq58
Length=14941408
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | || || || ||||||| |||| || || | ||
Sbjct 5525904 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCCTCG 5525845
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| || | ||| || ||| || || ||||| ||||| ||||| ||
Sbjct 5525844 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 5525785
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| | | || ||||| || || ||| | ||||||| || ||| || || ||||||
Sbjct 5525784 CAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGGCGTACTTTGTCTGACTACAAT 5525725
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||||||| | ||||| || ||| | || || || ||
Sbjct 5525724 ATTCAAAAGAAGTCCACCCTTCATCTTGTACTGAGACT 5525687
>seq7
Length=50527172
Score = 87.8 bits (96), Expect = 2e-12
Identities = 150/218 (69%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || || || | || || || ||||||| |||| | || | ||
Sbjct 41286268 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGCTGAACCCTCG 41286209
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| || | ||| || ||| || || ||||| ||||| ||||| ||
Sbjct 41286208 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 41286149
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| | | || ||||| || || ||| | ||||||| || ||| || || ||||||
Sbjct 41286148 CAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGGCGTACTTTGTCTGACTACAAT 41286089
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||||||| || ||||| || ||| | || || || ||
Sbjct 41286088 ATTCAAAAGGAGTCCACCCTTCATCTTGTACTGAGACT 41286051
>seq3
Length=68754498
Score = 82.4 bits (90), Expect = 7e-11
Identities = 149/218 (68%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| || || | || || || ||||||| | || || || | ||
Sbjct 46699550 ATGCAGATTTTTGTGAAAACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAACCCTCG 46699609
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|||||||| || | ||| || ||| || |||||||| ||||| ||||| ||
Sbjct 46699610 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGATCAG 46699669
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| | | || ||||| || || ||| | ||||||| | || || || ||||||
Sbjct 46699670 CAGAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGGAGTTCTTTGTCTGACTACAAT 46699729
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216
|||||||| | ||||| || ||| | || || || ||
Sbjct 46699730 ATTCAAAAGAAGTCCACCCTTCATCTTGTACTGAGACT 46699767
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433270445645870
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |