Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq116 123 2e-23 seq58 87.8 2e-12 seq7 87.8 2e-12 seq3 82.4 7e-11 >seq116 Length=7179089 Score = 123 bits (136), Expect = 2e-23 Identities = 171/238 (72%), Gaps = 1/238 (0%) Strand=Plus/Minus Query 24988 AAAACGGAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAG 25047 ||||| ||| | |||| || ||||| ||||| ||||||| || ||||||| | || | Sbjct 4848600 AAAACAGAAGA-TGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGG 4848542 Query 25048 TGGAGTCGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTC 25107 ||||| | |||||| |||||| | ||| ||| ||| |||||||| || || | Sbjct 4848541 TGGAGCCCAGTGACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCC 4848482 Query 25108 CACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGG 25167 | |||||||| ||| || | || ||||||||||| || | ||||||| ||||| || Sbjct 4848481 CCCCTGACCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGT 4848422 Query 25168 GCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || ||||| || || || || ||||| || || | ||||| | || ||||| || Sbjct 4848421 CTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGG 4848364 >seq58 Length=14941408 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || ||||||| |||| || || | || Sbjct 5525904 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACGCTCGAGGTTGAACCCTCG 5525845 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || || ||||| ||||| ||||| || Sbjct 5525844 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 5525785 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||| || || ||| | ||||||| || ||| || || |||||| Sbjct 5525784 CAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGGCGTACTTTGTCTGACTACAAT 5525725 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||| | ||||| || ||| | || || || || Sbjct 5525724 ATTCAAAAGAAGTCCACCCTTCATCTTGTACTGAGACT 5525687 >seq7 Length=50527172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || || || | || || || ||||||| |||| | || | || Sbjct 41286268 ATGCAGATTTTCGTGAAAACCCTTACGGGGAAGACCATCACCCTCGAGGCTGAACCCTCG 41286209 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || || ||||| ||||| ||||| || Sbjct 41286208 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 41286149 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||| || || ||| | ||||||| || ||| || || |||||| Sbjct 41286148 CAGAGATTGATCTTTGCTGGAAAGCAACTGGAAGATGGGCGTACTTTGTCTGACTACAAT 41286089 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||| || ||||| || ||| | || || || || Sbjct 41286088 ATTCAAAAGGAGTCCACCCTTCATCTTGTACTGAGACT 41286051 >seq3 Length=68754498 Score = 82.4 bits (90), Expect = 7e-11 Identities = 149/218 (68%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| || || | || || || ||||||| | || || || | || Sbjct 46699550 ATGCAGATTTTTGTGAAAACCCTTACGGGGAAGACCATCACGCTTGAGGTTGAACCCTCG 46699609 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 |||||||| || | ||| || ||| || |||||||| ||||| ||||| || Sbjct 46699610 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAAGAAGGAATTCCTCCTGATCAG 46699669 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| | | || ||||| || || ||| | ||||||| | || || || |||||| Sbjct 46699670 CAGAGACTGATCTTTGCTGGAAAGCAACTGGAAGATGGGAGTTCTTTGTCTGACTACAAT 46699729 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCT 25216 |||||||| | ||||| || ||| | || || || || Sbjct 46699730 ATTCAAAAGAAGTCCACCCTTCATCTTGTACTGAGACT 46699767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433270445645870