Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq57 199 4e-46
seq175 141 1e-28
seq83 102 9e-17
>seq57
Length=15126812
Score = 199 bits (220), Expect = 4e-46
Identities = 511/765 (67%), Gaps = 25/765 (3%)
Strand=Plus/Minus
Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983
|| || || |||||||| |||| ||| ||| ||| ||||||||||| | | || |
Sbjct 10750182 CTGTCTGCCACAAATTCAATGTTCTGCTTCATTAAAGTGCAATTCATTCCAATGA-ACTT 10750124
Query 92984 -ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG-ATTT 93041
||||| | || || || | ||| || | || ||| || || | | ||| ||||
Sbjct 10750123 CACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTGACAGCAT-TGACAATTATTT 10750065
Query 93042 CTATTACTCTACTATT-TGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAG 93100
| | |||| |||| | | |||||| | ||| | | ||| ||| | ||| | |||
Sbjct 10750064 CCTTGACTC-ACTACTCTAATGGTTTGTATACCAGGTGCTTGAACACCAGGCAGGTAAAA 10750006
Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160
|| ||||||||| || ||||| || | |||| || ||||| | || || | |
Sbjct 10750005 TCAC-ATGTAAACCCTCATCTCGACTAATAAGCTCACTGGAAAATGTGAGGCCAGGCATC 10749947
Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220
||||| |||||||||||||||||||||| |||||| ||||||||| | | ||| |
Sbjct 10749946 AGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGAACCAGAAAAGATTT---CTTTC 10749890
Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280
| || ||||| || |||| | |||| || | | || || | ||||| |
Sbjct 10749889 GCAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGC-------CTCTTTATCCACAAT 10749837
Query 93281 AAAGCCCAAT----CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336
| | || || || ||||| |||||||| | |||| || || || || ||
Sbjct 10749836 CCAACACAGGGTCACGTCTGCCTTCTTCATACAAGGCATCCTTTCAATGGCATTGAAGAG 10749777
Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396
| | || | || | |||| | |||| | || || | ||| ||||| ||||
Sbjct 10749776 GAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAATAAGGAGACTGTACATCCCAGA 10749717
Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456
||| | || ||||| ||||||||||| || |||||||| | ||||| || || || ||
Sbjct 10749716 ATGTATGTTATCCATGGCAATTTGGAACCCATAGAAACAGCGGGCTTCTGTAATTTGAAC 10749657
Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516
|||||| ||||| ||| || | |||||||| ||||||||||| || ||||| ||
Sbjct 10749656 TTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTATACCATCACTGGCAGCAAAGAA 10749597
Query 93517 aGCCAATATATGCTTTATAAA--ATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGA 93573
||||| | | |||||| || ||| || ||| || || ||||| | | ||
Sbjct 10749596 AGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGGCTTCAGGGCTTCCCAGTGCTGA 10749537
Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633
| || || |||||||| || | || | ||||| || || || ||||| |||||
Sbjct 10749536 -ACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAAGGAGGCCCTGGCTTTCTTGTA 10749478
Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678
||| | ||| || || || ||||| || ||||| || ||||| ||
Sbjct 10749477 CATCTGCCAGATATCATGCTATTGCATAGGAAAGATAACAAAGCG 10749433
>seq175
Length=2612143
Score = 141 bits (156), Expect = 1e-28
Identities = 282/415 (68%), Gaps = 6/415 (1%)
Strand=Plus/Minus
Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325
||||| ||||||| || |||||||| ||||||||||||| | | | | |||||| ||
Sbjct 1473366 CTGCT-ATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATT 1473308
Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385
| |||||||| | |||| || | | ||||| ||||| | ||| || | |
Sbjct 1473307 GTGTTAAATAAAAACTCTCTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTG 1473248
Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445
|| || || || || |||||||||| ||| | || || |||||||| ||| ||
Sbjct 1473247 TATATCTCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCT 1473188
Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505
| | ||||| || | || | |||||| | ||||||||| || || |||||
Sbjct 1473187 GAAACGTGCACGTCCT----AATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTG 1473132
Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565
| ||||||||| || || || || ||||||| |||| ||| ||||||| | |
Sbjct 1473131 GTTGCAAAAAAGGCTAAGATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTC 1473072
Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625
|| | | ||||| ||||| | || | || || | ||||| || |||| | |||
Sbjct 1473071 CAGTAAGGGAGATCCTTTGATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCT 1473012
Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA-ACGA 93679
| || ||||| | ||| || || | || || |||||||| |||||||| ||||
Sbjct 1473011 TGCTTATACATCTTCCAAATATCAGGGTACTGGATTGGAAAAATGACAAATACGA 1472957
>seq83
Length=10591344
Score = 102 bits (112), Expect = 9e-17
Identities = 91/114 (80%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192
||||||| ||||| | || || | |||||| |||||||||||||| |||||||| ||
Sbjct 7356177 CTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGC 7356236
Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246
|||| ||||||||| || || |||||||| || ||||| || || | ||||||
Sbjct 7356237 AAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCTACCACACGTTC 7356290
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556784941637520
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |