Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq57 199 4e-46 seq175 141 1e-28 seq83 102 9e-17 >seq57 Length=15126812 Score = 199 bits (220), Expect = 4e-46 Identities = 511/765 (67%), Gaps = 25/765 (3%) Strand=Plus/Minus Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 || || || |||||||| |||| ||| ||| ||| ||||||||||| | | || | Sbjct 10750182 CTGTCTGCCACAAATTCAATGTTCTGCTTCATTAAAGTGCAATTCATTCCAATGA-ACTT 10750124 Query 92984 -ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAG-ATTT 93041 ||||| | || || || | ||| || | || ||| || || | | ||| |||| Sbjct 10750123 CACAGGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTGACAGCAT-TGACAATTATTT 10750065 Query 93042 CTATTACTCTACTATT-TGGTGGTTTTTGTACGACATAATTGTACATTAAGCACGCAAAG 93100 | | |||| |||| | | |||||| | ||| | | ||| ||| | ||| | ||| Sbjct 10750064 CCTTGACTC-ACTACTCTAATGGTTTGTATACCAGGTGCTTGAACACCAGGCAGGTAAAA 10750006 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 || ||||||||| || ||||| || | |||| || ||||| | || || | | Sbjct 10750005 TCAC-ATGTAAACCCTCATCTCGACTAATAAGCTCACTGGAAAATGTGAGGCCAGGCATC 10749947 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 ||||| |||||||||||||||||||||| |||||| ||||||||| | | ||| | Sbjct 10749946 AGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGAACCAGAAAAGATTT---CTTTC 10749890 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 | || ||||| || |||| | |||| || | | || || | ||||| | Sbjct 10749889 GCAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGC-------CTCTTTATCCACAAT 10749837 Query 93281 AAAGCCCAAT----CGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAG 93336 | | || || || ||||| |||||||| | |||| || || || || || Sbjct 10749836 CCAACACAGGGTCACGTCTGCCTTCTTCATACAAGGCATCCTTTCAATGGCATTGAAGAG 10749777 Query 93337 GTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGA 93396 | | || | || | |||| | |||| | || || | ||| ||||| |||| Sbjct 10749776 GAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAATAAGGAGACTGTACATCCCAGA 10749717 Query 93397 ATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCAC 93456 ||| | || ||||| ||||||||||| || |||||||| | ||||| || || || || Sbjct 10749716 ATGTATGTTATCCATGGCAATTTGGAACCCATAGAAACAGCGGGCTTCTGTAATTTGAAC 10749657 Query 93457 TTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaa 93516 |||||| ||||| ||| || | |||||||| ||||||||||| || ||||| || Sbjct 10749656 TTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTATACCATCACTGGCAGCAAAGAA 10749597 Query 93517 aGCCAATATATGCTTTATAAA--ATGTTTCTCATCATCTTTAAGCTTATCCCAAT-CGGA 93573 ||||| | | |||||| || ||| || ||| || || ||||| | | || Sbjct 10749596 AGCCAGAACGAGAGATATAAAGTATCTTTTTCTTCAGGCTTCAGGGCTTCCCAGTGCTGA 10749537 Query 93574 TAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCTTTTTTGTA 93633 | || || |||||||| || | || | ||||| || || || ||||| ||||| Sbjct 10749536 -ACGTCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAAGGAGGCCCTGGCTTTCTTGTA 10749478 Query 93634 CATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAAACG 93678 ||| | ||| || || || ||||| || ||||| || ||||| || Sbjct 10749477 CATCTGCCAGATATCATGCTATTGCATAGGAAAGATAACAAAGCG 10749433 >seq175 Length=2612143 Score = 141 bits (156), Expect = 1e-28 Identities = 282/415 (68%), Gaps = 6/415 (1%) Strand=Plus/Minus Query 93266 CTGCTGATCCATTTTAAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATA 93325 ||||| ||||||| || |||||||| ||||||||||||| | | | | |||||| || Sbjct 1473366 CTGCT-ATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATT 1473308 Query 93326 GCGTTAAATAGGTAATCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAA 93385 | |||||||| | |||| || | | ||||| ||||| | ||| || | | Sbjct 1473307 GTGTTAAATAAAAACTCTCTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTG 1473248 Query 93386 TACATTTCAGAATGGACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCC 93445 || || || || || |||||||||| ||| | || || |||||||| ||| || Sbjct 1473247 TATATCTCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCT 1473188 Query 93446 GTGATCTGCACTTCTTGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGAT 93505 | | ||||| || | || | |||||| | ||||||||| || || ||||| Sbjct 1473187 GAAACGTGCACGTCCT----AATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTG 1473132 Query 93506 GCTGCaaaaaaaGCCAATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCC 93565 | ||||||||| || || || || ||||||| |||| ||| ||||||| | | Sbjct 1473131 GTTGCAAAAAAGGCTAAGATGTGGGAGATAAAATTCTTCTTATCTGGTTTAAGCGCGTTC 1473072 Query 93566 CAATCGGATAGATCTTTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGCT 93625 || | | ||||| ||||| | || | || || | ||||| || |||| | ||| Sbjct 1473071 CAGTAAGGGAGATCCTTTGATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCT 1473012 Query 93626 TTTTTGTACATATCCCATATGTCTTGATATTGAATTGGAAATATGACAAA-ACGA 93679 | || ||||| | ||| || || | || || |||||||| |||||||| |||| Sbjct 1473011 TGCTTATACATCTTCCAAATATCAGGGTACTGGATTGGAAAAATGACAAATACGA 1472957 >seq83 Length=10591344 Score = 102 bits (112), Expect = 9e-17 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 93133 CTCATTGCTGAATGTTAAACCTGGTAACAGTCCTCGTTTCTTGAGCCAAAATATTGAAGC 93192 ||||||| ||||| | || || | |||||| |||||||||||||| |||||||| || Sbjct 7356177 CTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCTTGAGCCAGAATATTGATGC 7356236 Query 93193 AAAACTACCAGaaaaaaaTATACCTTCCACGGCTGCAAATGCCACAATACGTTC 93246 |||| ||||||||| || || |||||||| || ||||| || || | |||||| Sbjct 7356237 AAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCTACCACACGTTC 7356290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556784941637520