Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq3 127 2e-24
seq73 123 2e-23
seq116 105 6e-18
seq42 95.1 1e-14
seq1 84.2 2e-11
>seq3
Length=68754498
Score = 127 bits (140), Expect = 2e-24
Identities = 166/230 (72%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| |||||||| | ||| || || | || || || || |||| || || || ||| ||
Sbjct 7045360 AAAATGCAAATCTCTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAGGTTGAACCC 7045301
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | || || |||| || || ||||||||||| || |||||||| ||
Sbjct 7045300 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 7045241
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || || ||| | || ||||||||| | |||||| |||||| |||| ||||||
Sbjct 7045240 CAGCAGCGGCTGATACTCGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGATTAC 7045181
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
||||| || ||||| |||||| | || | || |||| |||| || ||
Sbjct 7045180 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGGTGCGCCTGCGTGGTGG 7045131
>seq73
Length=12918409
Score = 123 bits (136), Expect = 2e-23
Identities = 166/230 (72%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| |||||||| ||||| || || | || || ||||| |||| || | || ||| ||
Sbjct 707335 AAAATGCAAATCTTTGTGAAGACCCTGACGGGCAAAACCATCACCCTACAGGTTGAACCC 707394
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | || || |||| || || ||||||||||| || ||||| || ||
Sbjct 707395 AGTGACACCATCGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGCATTCCTCCAGAC 707454
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || || ||||| || ||||||||| |||||| |||||| |||| ||||||
Sbjct 707455 CAGCAGCGGCTGATATTCGCTGGCAAACAGCGGGAGGATGGCCGCACTCTCTCTGATTAC 707514
Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|||| || ||||| |||||| | || | || ||||| || |||| ||
Sbjct 707515 -ACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGTGCGGTGG 707563
>seq116
Length=7179089
Score = 105 bits (116), Expect = 6e-18
Identities = 144/201 (72%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|||||||| || ||||| || || | ||||| || || |||| || || ||||| ||
Sbjct 4848593 AAGATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 4848534
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | || | |||| ||| || || ||||| ||||| || || || ||
Sbjct 4848533 AGTGACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCCCCCTGAC 4848474
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || | || || ||||||||||| ||| | || ||| ||||||| | || || |||
Sbjct 4848473 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCTGACTAC 4848414
Query 22396 AACATTCAAAAAGAATCCACC 22416
||||| || || || ||||||
Sbjct 4848413 AACATCCAGAAGGAGTCCACC 4848393
>seq42
Length=18862759
Score = 95.1 bits (104), Expect = 1e-14
Identities = 139/197 (71%), Gaps = 0/197 (0%)
Strand=Plus/Minus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| |||||||| ||||| || || | || || | || |||| || ||||| ||| ||
Sbjct 11622211 AAAATGCAAATCTTTGTGAAGACCCTGACAAGTGAGACCATCACACTAGAAGTTGAACCC 11622152
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| || |||| || || ||||||||||| || || ||||| ||
Sbjct 11622151 AGTGACACCAACATAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 11622092
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || || ||||| || |||| || | | |||||| |||||| |||| || |||
Sbjct 11622091 CAGCAGCGGCTGATATTCGCTGGCACACGGCTGGAGGATGGCCGCACTCTCTCTGAATAC 11622032
Query 22396 AACATTCAAAAAGAATC 22412
||||| || ||||| ||
Sbjct 11622031 AACATCCAGAAAGAGTC 11622015
>seq1
Length=77654946
Score = 84.2 bits (92), Expect = 2e-11
Identities = 139/201 (69%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275
|| |||||||| ||||| || || | | || || || ||||||| || || ||| |
Sbjct 73228319 AAAATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTAGAGGTTGAACCT 73228378
Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335
| || ||| | | || |||| || || ||||||||||| || |||||||| ||
Sbjct 73228379 AGTGACACCATCAAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 73228438
Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395
|| || || || ||| | || |||||| || |||||| | |||| || ||||||
Sbjct 73228439 CAGCAGCGGCTGATACTCGCTGGCAAATAGCGGGAGGATGGCTGCACTCAGTCTGATTAC 73228498
Query 22396 AACATTCAAAAAGAATCCACC 22416
| ||| || | ||| |||||
Sbjct 73228499 AGCATCCAGAGAGAGCCCACC 73228519
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419672251989370
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |