Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq3 127 2e-24 seq73 123 2e-23 seq116 105 6e-18 seq42 95.1 1e-14 seq1 84.2 2e-11 >seq3 Length=68754498 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| | ||| || || | || || || || |||| || || || ||| || Sbjct 7045360 AAAATGCAAATCTCTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAGGTTGAACCC 7045301 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| || |||||||| || Sbjct 7045300 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 7045241 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || ||| | || ||||||||| | |||||| |||||| |||| |||||| Sbjct 7045240 CAGCAGCGGCTGATACTCGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGATTAC 7045181 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || ||||| |||||| | || | || |||| |||| || || Sbjct 7045180 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGGTGCGCCTGCGTGGTGG 7045131 >seq73 Length=12918409 Score = 123 bits (136), Expect = 2e-23 Identities = 166/230 (72%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| ||||| || || | || || ||||| |||| || | || ||| || Sbjct 707335 AAAATGCAAATCTTTGTGAAGACCCTGACGGGCAAAACCATCACCCTACAGGTTGAACCC 707394 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || || |||| || || ||||||||||| || ||||| || || Sbjct 707395 AGTGACACCATCGAGAATGTCAAGACCAAGATCCAAGACAAGGAAGGCATTCCTCCAGAC 707454 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || ||||| || ||||||||| |||||| |||||| |||| |||||| Sbjct 707455 CAGCAGCGGCTGATATTCGCTGGCAAACAGCGGGAGGATGGCCGCACTCTCTCTGATTAC 707514 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 |||| || ||||| |||||| | || | || ||||| || |||| || Sbjct 707515 -ACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGTGCGGTGG 707563 >seq116 Length=7179089 Score = 105 bits (116), Expect = 6e-18 Identities = 144/201 (72%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || ||||| || || | ||||| || || |||| || || ||||| || Sbjct 4848593 AAGATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 4848534 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | || | |||| ||| || || ||||| ||||| || || || || Sbjct 4848533 AGTGACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAAGAGGGCATCCCCCCTGAC 4848474 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || | || || ||||||||||| ||| | || ||| ||||||| | || || ||| Sbjct 4848473 CAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCTGACTAC 4848414 Query 22396 AACATTCAAAAAGAATCCACC 22416 ||||| || || || |||||| Sbjct 4848413 AACATCCAGAAGGAGTCCACC 4848393 >seq42 Length=18862759 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| ||||| || || | || || | || |||| || ||||| ||| || Sbjct 11622211 AAAATGCAAATCTTTGTGAAGACCCTGACAAGTGAGACCATCACACTAGAAGTTGAACCC 11622152 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| || |||| || || ||||||||||| || || ||||| || Sbjct 11622151 AGTGACACCAACATAAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATCCCACCTGAC 11622092 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || ||||| || |||| || | | |||||| |||||| |||| || ||| Sbjct 11622091 CAGCAGCGGCTGATATTCGCTGGCACACGGCTGGAGGATGGCCGCACTCTCTCTGAATAC 11622032 Query 22396 AACATTCAAAAAGAATC 22412 ||||| || ||||| || Sbjct 11622031 AACATCCAGAAAGAGTC 11622015 >seq1 Length=77654946 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || |||||||| ||||| || || | | || || || ||||||| || || ||| | Sbjct 73228319 AAAATGCAAATCTTTGTGAAGACCCTGATGGGCAAGACCATCACTCTAGAGGTTGAACCT 73228378 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || ||| | | || |||| || || ||||||||||| || |||||||| || Sbjct 73228379 AGTGACACCATCAAGAATGTCAAGGCTAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 73228438 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || || || ||| | || |||||| || |||||| | |||| || |||||| Sbjct 73228439 CAGCAGCGGCTGATACTCGCTGGCAAATAGCGGGAGGATGGCTGCACTCAGTCTGATTAC 73228498 Query 22396 AACATTCAAAAAGAATCCACC 22416 | ||| || | ||| ||||| Sbjct 73228499 AGCATCCAGAGAGAGCCCACC 73228519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419672251989370