Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq56 91.5 3e-13 >seq56 Length=15139244 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Plus Query 42706 TGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCT 42765 |||| |||||| | || || || || |||||||||| || | || || |||| |||| Sbjct 9265155 TGGTGGCCTTTGCTGCTGTGGAAGGGGTCTTCTTCTCAGGGTCGTTTGCTGCCATATTCT 9265214 Query 42766 GGCTCAAGCAGA-AGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGG 42824 |||| ||| ||| ||| || |||||||||||||| || || || || ||||||||||| Sbjct 9265215 GGCTAAAGAAGAGAGGGCTC-ATGCCCGGACTCACGTTTTCCAATGAGCTCATCAGCAGA 9265273 Query 42825 GACGAGG 42831 || |||| Sbjct 9265274 GATGAGG 9265280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944210557392480