Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq19 113 4e-20 seq15 91.5 1e-13 >seq19 Length=34640225 Score = 113 bits (124), Expect = 4e-20 Identities = 221/327 (68%), Gaps = 0/327 (0%) Strand=Plus/Minus Query 20257 CATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCC 20316 ||| || || | |||| ||||||||| ||||| || | | |||| ||||||||||| Sbjct 4394385 CATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTCC 4394326 Query 20317 CGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAA 20376 |||||||| |||||||| ||||| |||| || | | || || | | || | Sbjct 4394325 TGACCTCTGGTACAGCTGGCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAGAGGGC 4394266 Query 20377 GTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGAT 20436 || | ||| || |||||||||| | | ||| |||||||| || ||||| |||| Sbjct 4394265 ATGGCCGGGAGGCAGCGCCATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTGAT 4394206 Query 20437 TCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCC 20496 |||||| |||| || || |||| || ||| | | | ||||||||| | || Sbjct 4394205 TCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACTCC 4394146 Query 20497 CTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAA 20556 || || | | || | || | || || || |||| || |||||||||||||| Sbjct 4394145 TTGTCCCGAGTCATCTGAATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGGAA 4394086 Query 20557 ACCGTAAACAGGTCCCAAATCCCCCTC 20583 ||| || || || ||||| |||| || Sbjct 4394085 ACCATACACTGGGCCCAAGACCCCTTC 4394059 >seq15 Length=38784467 Score = 91.5 bits (100), Expect = 1e-13 Identities = 118/163 (72%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296 || || || || || || | ||| || || | |||| ||||||||| ||||| || || Sbjct 20806127 AGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 20806186 Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356 || |||| ||||||||||| |||||||| |||||||| ||||| | ||| || | | Sbjct 20806187 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCACC 20806246 Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399 || || || || || | || ||||| || || ||||||| Sbjct 20806247 ACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCA 20806289 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441312673990320