Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_009333.1
Length=137969
Score E
Sequences producing significant alignments: (Bits) Value
seq19 113 4e-20
seq15 91.5 1e-13
>seq19
Length=34640225
Score = 113 bits (124), Expect = 4e-20
Identities = 221/327 (68%), Gaps = 0/327 (0%)
Strand=Plus/Minus
Query 20257 CATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGAACTCCCAAACCCATGTCTCC 20316
||| || || | |||| ||||||||| ||||| || | | |||| |||||||||||
Sbjct 4394385 CATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTCC 4394326
Query 20317 CGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCTACATAAAATTGACATAACAA 20376
|||||||| |||||||| ||||| |||| || | | || || | | || |
Sbjct 4394325 TGACCTCTGGTACAGCTGGCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAGAGGGC 4394266
Query 20377 GTGACAGGGCGGAAGCGCCATCAACGACAAGTCCGCCGGGTTCCACGCACACATAATGAT 20436
|| | ||| || |||||||||| | | ||| |||||||| || ||||| ||||
Sbjct 4394265 ATGGCCGGGAGGCAGCGCCATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTGAT 4394206
Query 20437 TCTTCTATCGTGCGGATTATTTTTTATTAAATCCACAATGTACGACAATTGGTCAAACCC 20496
|||||| |||| || || |||| || ||| | | | ||||||||| | ||
Sbjct 4394205 TCTTCTGTCGTCAGGGTTGGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACTCC 4394146
Query 20497 CTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCCGCCCCAAAGTGCCTCCACTGGAA 20556
|| || | | || | || | || || || |||| || ||||||||||||||
Sbjct 4394145 TTGTCCCGAGTCATCTGAATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGGAA 4394086
Query 20557 ACCGTAAACAGGTCCCAAATCCCCCTC 20583
||| || || || ||||| |||| ||
Sbjct 4394085 ACCATACACTGGGCCCAAGACCCCTTC 4394059
>seq15
Length=38784467
Score = 91.5 bits (100), Expect = 1e-13
Identities = 118/163 (72%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 20237 AGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGGA 20296
|| || || || || || | ||| || || | |||| ||||||||| ||||| || ||
Sbjct 20806127 AGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 20806186
Query 20297 ACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGCT 20356
|| |||| ||||||||||| |||||||| |||||||| ||||| | ||| || | |
Sbjct 20806187 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCACC 20806246
Query 20357 ACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCA 20399
|| || || || || | || ||||| || || |||||||
Sbjct 20806247 ACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCA 20806289
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 441312673990320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |