Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq116 95.1 1e-14 seq2 82.4 6e-11 >seq116 Length=7179089 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || ||||| || || |||||||| || || ||| ||||||||| |||||||| || | | Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 || || | || |||| |||||||||||||| ||||| | |||||| || || Sbjct 4848424 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4848483 Query 34021 ACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGATTCGCA 34079 | || |||||||||| || ||| ||| | | ||| | | ||| | | || Sbjct 4848484 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGA-CGTTCTCGATGGTGTCACTGGGCTCCAC 4848542 Query 34080 TTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATTTT 34130 || | || || || || ||||| || || ||||||||||| ||||| || Sbjct 4848543 CTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTT 4848593 >seq2 Length=75421681 Score = 82.4 bits (90), Expect = 6e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 33915 CAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGCTCGTC 33974 |||||| |||||||| ||| |||||| ||||||||||| || | ||| | ||| | || Sbjct 14371037 CAGCACAAGATGAAGAGTGGACTCCTTTTGAATGTTGTAGTCAGACAAAGGACGCCCATC 14371096 Query 33975 GTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGAT 34012 ||| | ||||| || ||||| ||||| | |||||||| Sbjct 14371097 TTCCTAGTGCTTACCAGCAAAGATCAGCCTCTGCTGAT 14371134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397009662420196