Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq58 89.7 5e-13 seq3 89.7 5e-13 seq138 84.2 2e-11 seq116 84.2 2e-11 seq7 84.2 2e-11 seq4 84.2 2e-11 seq93 82.4 8e-11 seq44 82.4 8e-11 >seq58 Length=14941408 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||| ||||||||| |||||||| || ||||||| || || ||||| || || | | Sbjct 5525711 GACTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCA 5525770 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| || || ||||| || ||||| || || ||| || |||| Sbjct 5525771 AAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 5525830 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | || ||||||| ||| | || || || || || ||||| Sbjct 5525831 TTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTC 5525890 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 5525891 ACGAAAATCTGCAT 5525904 >seq3 Length=68754498 Score = 89.7 bits (98), Expect = 5e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||| ||||||||| |||||||| || || || | || || ||||| || || | | Sbjct 46699743 GACTTCTTTTGAATATTGTAGTCAGACAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCA 46699684 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || |||||||| || ||| || |||| Sbjct 46699683 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACA 46699624 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | || ||||| | ||| | || || || || || ||||| Sbjct 46699623 TTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTC 46699564 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 46699563 ACAAAAATCTGCAT 46699550 >seq138 Length=5537732 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| |||||||| | ||||||| || || ||||| || || ||| Sbjct 893877 GACTCCTTTTGAATATTGTAGTCAGAAAAAGTACGCCCATCTTCCAGTTGCTTTCCAGAA 893818 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| || || ||||| || ||||| || || ||| || |||| Sbjct 893817 AAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 893758 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | ||| ||||| | | | | || | || || || ||||| Sbjct 893757 TTTTCTATAGTGTCCAAGGGCTCAACCTCAAGCATAATGGTCGTCCCCGTAAGGGTTTTC 893698 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 893697 ACAAAAATCTGCAT 893684 >seq116 Length=7179089 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| || || || || || || || || |||| | Sbjct 4848397 GACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 4848456 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| ||||| || || || || |||||||| ||| ||| || | Sbjct 4848457 AAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTTTGCCTTGACG 4848516 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | || | |||||| | | ||||||||| | || | || || || ||||| || || Sbjct 4848517 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 4848576 Query 138601 ACAAAAATCTGCAT 138614 ||||| |||||||| Sbjct 4848577 ACAAAGATCTGCAT 4848590 >seq7 Length=50527172 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| |||||||| || ||||||| || || ||||| || || | | Sbjct 41286075 GACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCA 41286134 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| | | ||| || || ||||| || ||||| || || ||| || |||| Sbjct 41286135 AAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 41286194 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | || |||||| || | || || || || || ||||| Sbjct 41286195 TTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTC 41286254 Query 138601 ACAAAAATCTGCAT 138614 || ||||||||||| Sbjct 41286255 ACGAAAATCTGCAT 41286268 >seq4 Length=53591480 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||||| || |||||||| || ||||||| || || ||||| || || | | Sbjct 13584045 GACTCCTTTTGGATATTGTAGTCAGACAAAGTACGCTCATCTTCCAGTTGCTTTCCAGCA 13583986 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || ||||| || || ||| || |||| Sbjct 13583985 AAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 13583926 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | || || || | ||| | || || || | || ||||| Sbjct 13583925 TTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGATGGTCTTCCCCATAAGGGTTTTC 13583866 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 13583865 ACAAAAATCTGCAT 13583852 >seq93 Length=9247444 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 4/198 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG----AGTTGTTTACC 138476 |||||||||||||| |||||||| || ||||||| || || ||||| || || Sbjct 8914067 GACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCTTCCAGTTGCTTTCC 8914126 Query 138477 GGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTT 138536 | | |||| | | ||| || || ||||| || ||||| || || ||| || || Sbjct 8914127 AGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 8914186 Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596 || | ||| | ||||| | | || ||||||| ||| | || || || || || || Sbjct 8914187 TACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGT 8914246 Query 138597 TTTTACAAAAATCTGCAT 138614 ||| || ||||||||||| Sbjct 8914247 TTTCACGAAAATCTGCAT 8914264 >seq44 Length=18557718 Score = 82.4 bits (90), Expect = 8e-11 Identities = 136/194 (70%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 ||||||||| |||| |||||||| || |||| || || || ||||| || || | | Sbjct 841705 GACTCCTTT-GAATATTGTAGTCAGACAAAGTATGCCCATCTTCAAGTTGCTTTCCAGCA 841763 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| || | ||| || || ||||| || ||||| || || ||| || |||| Sbjct 841764 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 841823 Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600 | ||| | ||||| | | || ||||||| ||| | || || || | || ||||| Sbjct 841824 TTTTCGA--GTGTCCGAGGGTTCAACCTCGAACGTGATGGTCTTCCCCTTAAGGGTTTTC 841881 Query 138601 ACAAAAATCTGCAT 138614 |||||||||||||| Sbjct 841882 ACAAAAATCTGCAT 841895 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496194796654560