Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq58 89.7 5e-13
seq3 89.7 5e-13
seq138 84.2 2e-11
seq116 84.2 2e-11
seq7 84.2 2e-11
seq4 84.2 2e-11
seq93 82.4 8e-11
seq44 82.4 8e-11
>seq58
Length=14941408
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||| ||||||||| |||||||| || ||||||| || || ||||| || || | |
Sbjct 5525711 GACTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCA 5525770
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | | ||| || || ||||| || ||||| || || ||| || ||||
Sbjct 5525771 AAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 5525830
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| ||| | ||||| | | || ||||||| ||| | || || || || || |||||
Sbjct 5525831 TTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTC 5525890
Query 138601 ACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 5525891 ACGAAAATCTGCAT 5525904
>seq3
Length=68754498
Score = 89.7 bits (98), Expect = 5e-13
Identities = 136/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||| ||||||||| |||||||| || || || | || || ||||| || || | |
Sbjct 46699743 GACTTCTTTTGAATATTGTAGTCAGACAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCA 46699684
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| || || ||||| || |||||||| || ||| || ||||
Sbjct 46699683 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACA 46699624
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| ||| | ||||| | | || ||||| | ||| | || || || || || |||||
Sbjct 46699623 TTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTC 46699564
Query 138601 ACAAAAATCTGCAT 138614
||||||||||||||
Sbjct 46699563 ACAAAAATCTGCAT 46699550
>seq138
Length=5537732
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||||||||| |||||||| | ||||||| || || ||||| || || |||
Sbjct 893877 GACTCCTTTTGAATATTGTAGTCAGAAAAAGTACGCCCATCTTCCAGTTGCTTTCCAGAA 893818
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | | ||| || || ||||| || ||||| || || ||| || ||||
Sbjct 893817 AAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 893758
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| ||| | ||||| | ||| ||||| | | | | || | || || || |||||
Sbjct 893757 TTTTCTATAGTGTCCAAGGGCTCAACCTCAAGCATAATGGTCGTCCCCGTAAGGGTTTTC 893698
Query 138601 ACAAAAATCTGCAT 138614
||||||||||||||
Sbjct 893697 ACAAAAATCTGCAT 893684
>seq116
Length=7179089
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||| || ||||||||||| || || || || || || || || |||| |
Sbjct 4848397 GACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCA 4848456
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| ||||| || || || || |||||||| ||| ||| || |
Sbjct 4848457 AAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGGATCTTTGCCTTGACG 4848516
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| || | |||||| | | ||||||||| | || | || || || ||||| || ||
Sbjct 4848517 TTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTC 4848576
Query 138601 ACAAAAATCTGCAT 138614
||||| ||||||||
Sbjct 4848577 ACAAAGATCTGCAT 4848590
>seq7
Length=50527172
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
|||||||||||||| |||||||| || ||||||| || || ||||| || || | |
Sbjct 41286075 GACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCA 41286134
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| | | ||| || || ||||| || ||||| || || ||| || ||||
Sbjct 41286135 AAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 41286194
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| ||| | ||||| | | || |||||| || | || || || || || |||||
Sbjct 41286195 TTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTC 41286254
Query 138601 ACAAAAATCTGCAT 138614
|| |||||||||||
Sbjct 41286255 ACGAAAATCTGCAT 41286268
>seq4
Length=53591480
Score = 84.2 bits (92), Expect = 2e-11
Identities = 135/194 (70%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||||| || |||||||| || ||||||| || || ||||| || || | |
Sbjct 13584045 GACTCCTTTTGGATATTGTAGTCAGACAAAGTACGCTCATCTTCCAGTTGCTTTCCAGCA 13583986
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| || || ||||| || ||||| || || ||| || ||||
Sbjct 13583985 AAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 13583926
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| ||| | ||||| | | || || || | ||| | || || || | || |||||
Sbjct 13583925 TTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGATGGTCTTCCCCATAAGGGTTTTC 13583866
Query 138601 ACAAAAATCTGCAT 138614
||||||||||||||
Sbjct 13583865 ACAAAAATCTGCAT 13583852
>seq93
Length=9247444
Score = 82.4 bits (90), Expect = 8e-11
Identities = 137/198 (69%), Gaps = 4/198 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCG----AGTTGTTTACC 138476
|||||||||||||| |||||||| || ||||||| || || ||||| || ||
Sbjct 8914067 GACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCTTCCAGTTGCTTTCC 8914126
Query 138477 GGAATAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTT 138536
| | |||| | | ||| || || ||||| || ||||| || || ||| || ||
Sbjct 8914127 AGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTT 8914186
Query 138537 TAATTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGT 138596
|| | ||| | ||||| | | || ||||||| ||| | || || || || || ||
Sbjct 8914187 TACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGT 8914246
Query 138597 TTTTACAAAAATCTGCAT 138614
||| || |||||||||||
Sbjct 8914247 TTTCACGAAAATCTGCAT 8914264
>seq44
Length=18557718
Score = 82.4 bits (90), Expect = 8e-11
Identities = 136/194 (70%), Gaps = 3/194 (2%)
Strand=Plus/Plus
Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480
||||||||| |||| |||||||| || |||| || || || ||||| || || | |
Sbjct 841705 GACTCCTTT-GAATATTGTAGTCAGACAAAGTATGCCCATCTTCAAGTTGCTTTCCAGCA 841763
Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540
|||| || | ||| || || ||||| || ||||| || || ||| || ||||
Sbjct 841764 AAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACA 841823
Query 138541 TGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 138600
| ||| | ||||| | | || ||||||| ||| | || || || | || |||||
Sbjct 841824 TTTTCGA--GTGTCCGAGGGTTCAACCTCGAACGTGATGGTCTTCCCCTTAAGGGTTTTC 841881
Query 138601 ACAAAAATCTGCAT 138614
||||||||||||||
Sbjct 841882 ACAAAAATCTGCAT 841895
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496194796654560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |