Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq3 113 3e-20
seq73 109 4e-19
seq7 95.1 9e-15
seq58 89.7 4e-13
seq4 89.7 4e-13
seq42 87.8 1e-12
seq133 82.4 5e-11
seq93 82.4 5e-11
>seq3
Length=68754498
Score = 113 bits (124), Expect = 3e-20
Identities = 164/232 (71%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| |||| | | || | || ||||| || ||||| || |||||||||||
Sbjct 7045129 TGCCACCACGCAGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAG 7045188
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|||| | | | || || | |||||||||||| ||||| ||||| ||||| ||
Sbjct 7045189 AGAGAGTGCGGCCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTG 7045248
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||||||||| || ||| || ||| | || || || || || ||| |
Sbjct 7045249 GAATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAA 7045308
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
| |||| ||| ||||| || || ||||| || || ||| | |||||||| ||
Sbjct 7045309 CCTCTAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCATTTT 7045360
Score = 87.8 bits (96), Expect = 1e-12
Identities = 158/229 (69%), Gaps = 4/229 (2%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG--C 15007
||||| || | ||| | || | ||||||||| || | ||||| || ||||| || |
Sbjct 46699776 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGAC 46699717
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|||| ||| | ||||| | ||| || ||||| | |||| | ||| || || |
Sbjct 46699716 AAAGAA--CTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAG 46699659
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||||||||| || || || ||| |||||| |||||||||| || ||| |
Sbjct 46699658 GAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 46699599
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | || ||||| || || || || ||||| |||||||| |||||
Sbjct 46699598 CCTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550
>seq73
Length=12918409
Score = 109 bits (120), Expect = 4e-19
Identities = 164/232 (71%), Gaps = 1/232 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||| | || | || || | || ||||| || ||||| || |||| ||||||
Sbjct 707565 TGCCACCGCACAGGCGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCAG 707507
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|||| | | | || || |||||||||||| |||||| ||||| ||||| |
Sbjct 707506 AGAGAGTGCGGCCATCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAG 707447
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
|||| ||||||||||| || ||| | || ||| | || || || || || ||| |
Sbjct 707446 GAATGCCTTCCTTGTCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAA 707387
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
| | || ||| |||||||| || ||||| || || ||||| |||||||| ||
Sbjct 707386 CCTGTAGGGTGATGGTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTT 707335
>seq7
Length=50527172
Score = 95.1 bits (104), Expect = 9e-15
Identities = 157/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | ||| | || | ||||||||| || || ||||| || ||||| ||
Sbjct 41286042 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGAC 41286101
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | | ||||| | ||| || ||||| | ||||| | ||| || || |||
Sbjct 41286102 AAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGA 41286161
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || || ||| |||||| |||||||||| || ||| |
Sbjct 41286162 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCC 41286221
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | ||| ||||| || || || || ||||| || ||||| |||||
Sbjct 41286222 TCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268
>seq58
Length=14941408
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | ||| | || | ||||||||| || | ||||| || ||||| ||
Sbjct 5525678 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGAC 5525737
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | | ||||| | ||| || ||||| | ||||| | ||| || || |||
Sbjct 5525738 AAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGA 5525797
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || || ||| |||||| |||||||||| || ||| ||
Sbjct 5525798 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 5525857
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | || ||||| || || || || ||||| || ||||| |||||
Sbjct 5525858 TCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904
>seq4
Length=53591480
Score = 89.7 bits (98), Expect = 4e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | ||| | || | ||||||||| || || ||||| || ||||| ||
Sbjct 13584078 CCACCACGAAGTCTCAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGAC 13584019
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
| | | | | | ||||| | ||| || ||||| | |||| | ||| || || |||
Sbjct 13584018 AAAGTACGCTCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 13583959
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||||||||| || || ||| |||||| |||||||||| || ||| ||
Sbjct 13583958 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACA 13583899
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| | || ||||| || || | || ||||| |||||||| |||||
Sbjct 13583898 TCAAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852
>seq42
Length=18862759
Score = 87.8 bits (96), Expect = 1e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 14977 AGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGTTTG 15036
|||| ||| ||||| || |||||||| || |||| | | | || || | || ||
Sbjct 11622009 AGGGGAGACTCTTTCTGGATGTTGTATTCAGAGAGAGTGCGGCCATCCTCCAGCCGTGTG 11622068
Query 15037 CCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAATTTTGCTT 15096
|||||| |||||| ||||| ||||| ||| || ||||||||||| || |||
Sbjct 11622069 CCAGCGAATATCAGCCGCTGCTGGTCAGGTGGGATGCCTTCCTTGTCTTGGATCTTGGCC 11622128
Query 15097 TTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGTCAGA 15156
|| ||| || | || || || ||| || |||| || ||||| | || ||||||
Sbjct 11622129 TTGACATTTATGTTGGTGTCACTGGGTTCAACTTCTAGTGTGATGGTCTCACTTGTCAGG 11622188
Query 15157 GTTTTTACAAAAATTTGCATATT 15179
|| || ||||| |||||||| ||
Sbjct 11622189 GTCTTCACAAAGATTTGCATTTT 11622211
>seq133
Length=5915255
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/229 (69%), Gaps = 3/229 (1%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCG--C 15007
||||| | | ||| | || | ||||||||| || || ||||| || |||| || |
Sbjct 1746481 CCACCATGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTGGTCAGAC 1746540
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|| || | | | ||||| | ||| || ||||| | ||||| | ||| || || |
Sbjct 1746541 AAAGTATGCCC-CATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAG 1746599
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
||||||||||||| || || ||| |||||| |||||||||| || ||| |
Sbjct 1746600 GAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAA 1746659
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | || ||||| || || | || ||||| |||||||| |||||
Sbjct 1746660 CCTCGAGTGTGATGGTCTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708
>seq93
Length=9247444
Score = 82.4 bits (90), Expect = 5e-11
Identities = 157/231 (68%), Gaps = 4/231 (2%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| || | ||| | || | ||||||||| || || ||||| || ||||| ||
Sbjct 8914034 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGAC 8914093
Query 15010 AGAATTCTCGCGTCTTCT----AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTT 15065
| | | | | | ||||| | ||| || ||||| | ||||| | ||| || ||
Sbjct 8914094 AAAGTACGCCCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGG 8914153
Query 15066 TGGAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTC 15125
|||||||||||||| || || ||| |||||| |||||||||| || |||
Sbjct 8914154 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTC 8914213
Query 15126 TACGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || | || ||||| || || || || ||||| || ||||| |||||
Sbjct 8914214 AACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357344531417930
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