Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 seq58 104 2e-17 seq116 100 3e-16 seq93 96.9 3e-15 seq44 93.3 4e-14 seq138 91.5 1e-13 seq133 89.7 5e-13 seq31 89.7 5e-13 seq4 89.7 5e-13 seq3 86.0 6e-12 seq77 82.4 7e-11 seq32 82.4 7e-11 seq5 82.4 7e-11 >seq7 Length=50527172 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || || || | ||| | || ||||| |||||||||||||| || Sbjct 41286039 GCACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCA 41286098 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || |||||||| ||||||||| ||||||||| ||| Sbjct 41286099 GACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGA 41286158 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 41286159 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCA 41286218 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | |||| ||| | || || || || || ||||| || ||||||||||| Sbjct 41286219 GCCTCGAGGGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 41286268 >seq58 Length=14941408 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || || || | ||| | || |||| |||||||||||||| || Sbjct 5525675 GCACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCA 5525734 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || || ||| || || || |||||||| ||||||||| ||||||||| ||| Sbjct 5525735 GACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGA 5525794 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 5525795 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCA 5525854 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || || || ||||| || ||||||||||| Sbjct 5525855 ACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 5525904 >seq116 Length=7179089 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 126904 CACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTC 126963 ||||| || | || ||||| || || || ||||| || || ||||| ||| || Sbjct 4848381 CACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTC 4848440 Query 126964 TAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGT 127023 ||||| || || || |||||| | |||||| || || || |||||||| |||||| Sbjct 4848441 CAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTG 4848500 Query 127024 GATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTT 127083 ||| || ||||| | |||| |||||| | ||| || || | ||| | || || Sbjct 4848501 GATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTT 4848560 Query 127084 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 ||||||||| || || ||||| |||||||| Sbjct 4848561 GCCGGTCAGGGTCTTCACAAAGATCTGCAT 4848590 >seq93 Length=9247444 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || || | ||| | || ||||| |||||||||||||| || | Sbjct 8914034 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGAC 8914093 Query 126947 ATCGTGCGAGAATCGTCT----AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 | || || ||| || || || |||||||| ||||||||| ||||||||| || Sbjct 8914094 AAAGTACGCCCATCTTCCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGG 8914153 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 ||| || || ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 8914154 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTC 8914213 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || || || ||||| || ||||||||||| Sbjct 8914214 AACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 8914264 >seq44 Length=18557718 Score = 93.3 bits (102), Expect = 4e-14 Identities = 160/230 (70%), Gaps = 3/230 (1%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || || || | ||| | || ||||| ||| |||||||||| || Sbjct 841669 GCACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTT-GAATATTGTAGTCA 841727 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || || | ||| || || || |||||||| |||||| || ||||||||| ||| Sbjct 841728 GACAAAGTATGCCCATCTTCAAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGA 841787 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||||| ||||||| || Sbjct 841788 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCGA--GTGTCCGAGGGTTCA 841845 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || | || ||||| |||||||||||||| Sbjct 841846 ACCTCGAACGTGATGGTCTTCCCCTTAAGGGTTTTCACAAAAATCTGCAT 841895 >seq138 Length=5537732 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || || || | ||| | || ||||| |||||||||||||| || Sbjct 893913 GCACCACCACGAAGTCTCAGTACAAGATGAACGGTGGACTCCTTTTGAATATTGTAGTCA 893854 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 | || || ||| || || || ||||||| ||||||||| ||||||||| ||| Sbjct 893853 GAAAAAGTACGCCCATCTTCCAGTTGCTTTCCAGAAAAGATCAATCTCTGCTGATCAGGA 893794 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | |||||| ||| Sbjct 893793 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCAAGGGCTCA 893734 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | | | || | || || || ||||| |||||||||||||| Sbjct 893733 ACCTCAAGCATAATGGTCGTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 893684 >seq133 Length=5915255 Score = 89.7 bits (98), Expect = 5e-13 Identities = 159/231 (69%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || || || | ||| | || ||||| ||||||||||||| || Sbjct 1746478 GCACCACCATGAAGTCTCAGTACAAGATGAAGGGTGGACTCCTTTTGAATATTGTGGTCA 1746537 Query 126944 CCCATCGTGCGAGA-ATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGG 127002 || || | ||| || || || |||||||| ||||||||| ||||||||| || Sbjct 1746538 GACAAAGTATGCCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGG 1746597 Query 127003 AGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTC 127062 ||| || || ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 1746598 AGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTC 1746657 Query 127063 GACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || | || || || | || ||||| |||||||||||||| Sbjct 1746658 AACCTCGAGTGTGATGGTCTTCCCATTAAGGGTTTTCACAAAAATCTGCAT 1746708 >seq31 Length=29319519 Score = 89.7 bits (98), Expect = 5e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || |||||||||||||||||||| || || | || ||| || || || ||| || Sbjct 3469682 GTGGACTCTTTTTGAATATTGTAGTCAGACAAAGCACGCCCATCTTCCAGTTGCTTTGCA 3469623 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || ||||||||| ||||||||| ||||| || || ||||| ||| ||| || ||| Sbjct 3469622 GCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTT 3469563 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | ||| | ||||||| || || | || || | || || || | || ||| Sbjct 3469562 ACATTTTCTATAGTGTCCGAGGGTTCAACCTTGAGCGTGATGGTCTTCCCCATAAGGGTT 3469503 Query 127097 TTTACAAAAATCTGCAT 127113 || || ||||||||||| Sbjct 3469502 TTCACGAAAATCTGCAT 3469486 >seq4 Length=53591480 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || || ||| | ||| | || ||||| ||||| |||||||| || | Sbjct 13584078 CCACCACGAAGTCTCAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGAC 13584019 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || || || |||||||| |||||| | ||||||||| ||||| Sbjct 13584018 AAAGTACGCTCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGA 13583959 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||| ||| ||| || ||| | | ||| | ||||| | || || Sbjct 13583958 ATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACA 13583899 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | || | || || || | || ||||| |||||||||||||| Sbjct 13583898 TCAAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852 >seq3 Length=68754498 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| || | || || || | ||| | || |||| |||||||||||||| || Sbjct 46699779 GCACCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCA 46699720 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || | | ||| || || || |||||||| |||||| || ||||||||| ||| Sbjct 46699719 GACAAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGA 46699660 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || || || ||| ||| || ||| | | ||| | ||||||| || Sbjct 46699659 GGAATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCA 46699600 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || || || ||||| |||||||||||||| Sbjct 46699599 ACCTCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCAT 46699550 >seq77 Length=12540898 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || |||||||| ||||||||| ||||||||| ||||| || || ||||| Sbjct 3217751 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 3217810 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | ||| | ||||||| || || |||| || | Sbjct 3217811 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 3217870 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| || ||||||||||| Sbjct 3217871 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 3217905 >seq32 Length=28272660 Score = 82.4 bits (90), Expect = 7e-11 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || || || |||||||| ||||||||| ||||||||| ||||| || || ||||| Sbjct 1753122 TCTTCCAGTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTA 1753181 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||| | | ||| | ||||||| || || |||| || | Sbjct 1753182 TCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATG 1753241 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || || || || ||||| || ||||||||||| Sbjct 1753242 GTCTTCCCCGTAAGGGTTTTCACGAAAATCTGCAT 1753276 >seq5 Length=53451024 Score = 82.4 bits (90), Expect = 7e-11 Identities = 156/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 126884 GCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCG 126943 || ||||| | | || || ||| | || | || |||| ||||| |||||||| || Sbjct 40328456 GCACCACCATGAAGTCTCAGCACAAGATAAAGGGTGGACTTCTTTTGGATATTGTAGTCA 40328397 Query 126944 CCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGA 127003 || |||| ||| || || || |||||||| |||||| | ||||||||| ||| Sbjct 40328396 GACAAATTGCGTCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGA 40328337 Query 127004 GGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCG 127063 || || || ||||| ||| ||| || ||| | | ||| | ||||||| || Sbjct 40328336 GGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCA 40328277 Query 127064 ACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || || | || | || || || || || ||||| | |||||||||||| Sbjct 40328276 ACCTCAAGTGTGATGGTCTTCCCCGTAAGGGTTTTCATAAAAATCTGCAT 40328227 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475436024903520