Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_012639.1
Length=141291
Score E
Sequences producing significant alignments: (Bits) Value
seq4 86.0 6e-12
seq3 84.2 2e-11
>seq4
Length=53591480
Score = 86.0 bits (94), Expect = 6e-12
Identities = 163/239 (68%), Gaps = 1/239 (0%)
Strand=Plus/Minus
Query 45107 TTTTATT-CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT 45165
||||| | || || || || |||| ||| ||||| || || || |||||||||||||| |
Sbjct 13584086 TTTTAGTACCACCACGAAGTCTCAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGT 13584027
Query 45166 AATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGT 45225
| || | || ||| |||| ||| ||||| || | |||| | ||||| |
Sbjct 13584026 AGTCAGACAAAGTACGCTCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGAT 13583967
Query 45226 CCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAG 45285
| || ||||| ||||| ||||| || || || || | ||||| ||||| || |
Sbjct 13583966 CAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGG 13583907
Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344
|| || || || || | || || || | || ||||| |||||||| |||||| ||
Sbjct 13583906 GTTCAACATCAAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATCTCG 13583848
>seq3
Length=68754498
Score = 84.2 bits (92), Expect = 2e-11
Identities = 79/101 (78%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665
|| || || || |||||||||||||||||||| |||| ||| |||| | |||||||
Sbjct 19123126 GAGACGGGCACCCCGTACATGCTCTACAAAGATTCCTGTAACCGGAAGAGCAATCAGCAG 19123067
Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706
||| ||||||| || |||||||| || | ||| | |||||
Sbjct 19123066 AACCTGGGAACCATCAAATGTAGCAACTTGTGCACAGAAAT 19123026
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173
|| || || || |||| || ||||| || || || | |||||| ||||| || ||
Sbjct 46699776 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGAC 46699717
Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233
| | | ||| |||| ||| ||||| || | |||| || ||||| || || |||
Sbjct 46699716 AAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 46699657
Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293
|| ||||||||||| || || || || | ||||| ||||| || | || ||
Sbjct 46699656 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 46699597
Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344
|| || || | || || || || || ||||| |||||||| |||||| ||
Sbjct 46699596 TCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATCTCG 46699546
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 451941625864080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |