Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq4 86.0 6e-12 seq3 84.2 2e-11 >seq4 Length=53591480 Score = 86.0 bits (94), Expect = 6e-12 Identities = 163/239 (68%), Gaps = 1/239 (0%) Strand=Plus/Minus Query 45107 TTTTATT-CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTAT 45165 ||||| | || || || || |||| ||| ||||| || || || |||||||||||||| | Sbjct 13584086 TTTTAGTACCACCACGAAGTCTCAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGT 13584027 Query 45166 AATCGCTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGT 45225 | || | || ||| |||| ||| ||||| || | |||| | ||||| | Sbjct 13584026 AGTCAGACAAAGTACGCTCATCTTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGAT 13583967 Query 45226 CCGGCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAG 45285 | || ||||| ||||| ||||| || || || || | ||||| ||||| || | Sbjct 13583966 CAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGG 13583907 Query 45286 ACTCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 || || || || || | || || || | || ||||| |||||||| |||||| || Sbjct 13583906 GTTCAACATCAAGCGTGATGGTCTTCCCCATAAGGGTTTTCACAAAAATCTGCATCTCG 13583848 >seq3 Length=68754498 Score = 84.2 bits (92), Expect = 2e-11 Identities = 79/101 (78%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 123606 GAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGC 123665 || || || || |||||||||||||||||||| |||| ||| |||| | ||||||| Sbjct 19123126 GAGACGGGCACCCCGTACATGCTCTACAAAGATTCCTGTAACCGGAAGAGCAATCAGCAG 19123067 Query 123666 AACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAAT 123706 ||| ||||||| || |||||||| || | ||| | ||||| Sbjct 19123066 AACCTGGGAACCATCAAATGTAGCAACTTGTGCACAGAAAT 19123026 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || || || |||| || ||||| || || || | |||||| ||||| || || Sbjct 46699776 CCACCACGAAGTCTCAGTACAAGATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGAC 46699717 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | | | ||| |||| ||| ||||| || | |||| || ||||| || || ||| Sbjct 46699716 AAAGAACTCCCATCTTCCAGTTGCTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGA 46699657 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACT 45293 || ||||||||||| || || || || | ||||| ||||| || | || || Sbjct 46699656 ATTCCTTCTTTATCCTGGATCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACC 46699597 Query 45294 TCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCG 45344 || || || | || || || || || ||||| |||||||| |||||| || Sbjct 46699596 TCAAGCGTGATGGTCTTCCCCGTAAGGGTTTTCACAAAAATCTGCATCTCG 46699546 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451941625864080