Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_012783.2
Length=226205
Score E
Sequences producing significant alignments: (Bits) Value
seq49 143 4e-29
seq31 141 1e-28
seq54 89.7 7e-13
>seq49
Length=17435334
Score = 143 bits (158), Expect = 4e-29
Identities = 311/462 (67%), Gaps = 9/462 (2%)
Strand=Plus/Minus
Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611
|||||||| ||| | |||| | | || || || || || || || || || ||||||||
Sbjct 4663619 ATCAGGCAGCAGGGGGTGCCGGTGATAAAGAGTGTTAAAATCAGCAGCGATCCGGTTCTG 4663560
Query 9612 GTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671
|||||| | | ||| || | ||| |||| || |||| | |||||| || ||
Sbjct 4663559 GTACTGCGACTGTTTGTTGAAGAGCAGCTCTGGGTTCAACTTTAGATTGAAGTGATAACC 4663500
Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAATGATTAG 9731
|| | ||||||||||| | | || | | | ||||| || || || | || ||
Sbjct 4663499 ACTCACGTGCTGGACATAGTCTTCAATCAG--TCTCGATGGTCTCTCCTGTCAGAATGAG 4663442
Query 9732 ACGAGTGGTTTGAAA--CAACTGCTCGTC-ACCCCATTCCGGGTGTTCGTGTTTGAGAAC 9788
| | |||| | ||| || || | |||| || ||||| || ||| | || |
Sbjct 4663441 CCTGCCAGCCTGAAGAGCCGCTGGTCATCCATCCCACTCTGGGTGCTCCTGTCTCAGCGC 4663382
Query 9789 ATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCAC 9848
|| || |||| ||| || | |||||| || | |||||||||||| | || |||||
Sbjct 4663381 GTC----ACTCTGTCGTGCTCCCGCAGCCAGATCGCGGCGTACATCATCAGGCCTGGCAC 4663326
Query 9849 TAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATA 9908
| |||||| || ||| |||||| ||||| ||||| | ||| || | || | |
Sbjct 4663325 CAGACCAAAGACCTCACGCCCCACAGCAAACCGCAGGTGATCAGGGGTGTGAGGAGGGCA 4663266
Query 9909 CAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968
| ||| | | || | || ||| |||| || || || |||| || || | ||| |||||
Sbjct 4663265 AATCATTTCCGCCCGAGTGTCTCTGACTGTAGGCGGGTACACCTCTCCATGAATGACCTG 4663206
Query 9969 ATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTG 10010
||| |||| || ||||||||||| || ||||| ||||| ||
Sbjct 4663205 ATATTTCAATTTTCCATCCTTGAAAAGGCGCAGTTTATGTTG 4663164
Score = 131 bits (144), Expect = 2e-25
Identities = 211/301 (70%), Gaps = 2/301 (1%)
Strand=Plus/Plus
Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934
||| | ||| || | || ||||| ||||||| || || ||||| ||||||||||
Sbjct 9420565 AACACTGAAGGCCGTAAAGGGACAGTCCTTCACGTTATTGCAGATGAGAGACTGAATGGA 9420624
Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994
|| || || | ||| || ||||| || || || || || ||||| || |||||||||
Sbjct 9420625 GGCTGTGTTGATGATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTG 9420684
Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054
| | | || ||| || |||| || ||||||||||| | || || || | || |
Sbjct 9420685 AGAG-ATCATATGGGATTACCCATAAGTCCTTTCAAGGAGGATGGCGCTCCAGGTTCTAC 9420743
Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114
||| |||| |||||||| ||| | ||||| || ||||| || | | | ||| || ||
Sbjct 9420744 CATGGTCTCCCCGAAGATAGCATCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATATAG 9420803
Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174
|| | || || | ||| | ||||||||||| | || ||||| || |||||||| ||
Sbjct 9420804 CTCCATGGCATCAATGTCCCGGTAGAGGGCTTCGGA-TCTGCAGCCATTTCCTTCTCTCC 9420862
Query 9175 T 9175
|
Sbjct 9420863 T 9420863
Score = 118 bits (130), Expect = 2e-21
Identities = 307/463 (66%), Gaps = 20/463 (4%)
Strand=Plus/Plus
Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611
|||||||| ||| | |||| | | || || || || || || || || || ||||||||
Sbjct 9421123 ATCAGGCAGCAGGGGGTGCCGGTGATAAAGAGTGTTAAAATCAGCAGCGATCCGGTTCTG 9421182
Query 9612 GTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671
|||||| | | ||| || | ||| |||| || |||| | |||||| || ||
Sbjct 9421183 GTACTGCGACTGTTTGTTGAAGAGCAGCTCTGGGTTCAACTTTAGATTGAAGTGATAACC 9421242
Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAATGATTAG 9731
|| | ||||||||||| | | || | | | ||||| || || || | || ||
Sbjct 9421243 ACTCACGTGCTGGACATAGTCTTCAATCAG--TCTCGATGGTCTCTCCTGTCAGAATGAG 9421300
Query 9732 ACGAGTGGTTTGAAA--CAACTGCTCGTC-ACCCCATTCCGGGTGTTCGTGTTTGAGAAC 9788
| | |||| | ||| || || | |||| || ||||| || ||| | || |
Sbjct 9421301 CCTGCCAGCCTGAAGAGCCGCTGGTCATCCATCCCACTCTGGGTGCTCCTGTCTCAGCGC 9421360
Query 9789 ATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCAC 9848
|| || |||| ||| || | |||||| || | |||||||||||| | || |||||
Sbjct 9421361 GTC----ACTCTGTCGTGCTCCCGCAGCCAGATCGCGGCGTACATCATCAGGCCTGGCAC 9421416
Query 9849 TAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGG-GCGCAT 9907
| |||||| || ||| |||||| ||||| ||||| | ||| || | || | ||
Sbjct 9421417 CAGACCAAAGACCTCACGCCCCACAGCAAACCGCAGGTGATCAGGGTGTGAGGAGGGC-- 9421474
Query 9908 ACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967
| | ||| | | || | || ||| ||| || || || |||| || || | ||| ||||
Sbjct 9421475 AAATCATTTCCGCCCGAGTGTCTCGGACTGTAGGCGGGTACACCTCTCCATGAATGACCT 9421534
Query 9968 GATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTG 10010
|||| || |||||||||| || ||||| ||||| ||
Sbjct 9421535 GATATTT--------CATCCTTGAAAAGGCGCAGTTTATGTTG 9421569
Score = 95.1 bits (104), Expect = 2e-14
Identities = 157/224 (70%), Gaps = 2/224 (1%)
Strand=Plus/Minus
Query 8947 GATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGAT 9006
||| || ||||| || || || || || ||||| || ||||||||| | | | || ||
Sbjct 4664105 GATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGAG-ATCATAT 4664047
Query 9007 GACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACC 9066
| || |||| || ||||||||||| | || || || | || | ||| |||| ||
Sbjct 4664046 GGGATTACCCATAAGTCCTTTCAAGGAGGATGGCGCTCCAGGTTCTACCATGGTCTCCCC 4663987
Query 9067 GAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTC 9126
|||||| ||| | ||||| || ||||| || | | | ||| || || || | || ||
Sbjct 4663986 GAAGATAGCATCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATATAGCTCCATGGCATC 4663927
Query 9127 GACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCT 9170
| ||| | |||||||||| | ||| ||||| || |||||||
Sbjct 4663926 AATGTCCCGGTAGAGGGCTT-CGGCTCTGCAGCCATTTCCTTCT 4663884
>seq31
Length=29319519
Score = 141 bits (156), Expect = 1e-28
Identities = 170/231 (74%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 9737 TGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGA 9796
|||| || || | | |||| ||| ||| || |||||||| ||| | || | || || |
Sbjct 1008810 TGGTCTGGAAGAGCCGCTCATCATTCCACTCTGGGTGTTCCTGTCTCAGCATGTCACACA 1008869
Query 9797 CCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAA 9856
| ||||||||||| | |||||| || |||||||||||||| | || ||||| | |||||
Sbjct 1008870 CTCTGTTGTGTTCCCGCAGCCAGATCGTGGCGTACATCATCAGGCCAGGCACCAGACCAA 1008929
Query 9857 ACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT 9916
| || |||| |||||| ||||| ||||| | ||| || | || | || | ||| |
Sbjct 1008930 AGACCTCATGCCCCACAGCAAACCGCAGGTGATCAGGGGTGTGAGGAGGGTAAATCATTT 1008989
Query 9917 GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967
|||||| || ||| |||| || || || |||| || || ||||||||||
Sbjct 1008990 CCACCTGAGTGTCTCTGACTGTAGGTGGGTACACCTCTCCATCAATAACCT 1009040
Score = 125 bits (138), Expect = 1e-23
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 8947 GATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGAT 9006
||| || ||||| || || || || || ||||| || |||||||| || || || ||
Sbjct 1007061 GATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACATAT 1007120
Query 9007 GACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACC 9066
| || |||| || ||||||||||| || || || || || || | ||| |||| ||
Sbjct 1007121 GGGATTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCAAGTTCTACCATGGTCTCCCC 1007180
Query 9067 GAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTC 9126
|||||| || | ||||| || ||||| || | | | ||| || || || | || ||
Sbjct 1007181 GAAGATAGCGTCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATTGCATC 1007240
Query 9127 GACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175
| ||| || ||||||||||||| ||| ||||| || |||||||| |||
Sbjct 1007241 AATGTCCCCGTAGAGGGCTTCCAGCTCTGCAGCCATTTCCTTCTCTCCT 1007289
Score = 111 bits (122), Expect = 2e-19
Identities = 186/269 (69%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 9451 GTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACG 9510
||||| || || | || |||| | ||| |||| || || ||||| |||||||| |
Sbjct 1008222 GTGAATGACTCGATGAAGTGGGTCAGTCCATGCTCGACCAGTATGGAGTTGTTGTAGAGA 1008281
Query 9511 AAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGC 9570
|| |||| | |||| | ||| | ||| |||| |||||||| ||| |||
Sbjct 1008282 AACTGTTTAAAGTTGTACTCCTGGTCTTCAATGTGAAAGGTATCAGGCAGCAGGCGGTGC 1008341
Query 9571 CAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTACCG 9630
||| | || ||||| |||||||| || || || |||||||||||||| || | |
Sbjct 1008342 CAGTGATAAAGGGTGTTGAACTCAGCAGCGATCCGGTTCTGGTACTGGAATTGTTTGTTG 1008401
Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATAC 9690
|| || | ||| |||||||| |||| | |||||| || || || | |||||||||||
Sbjct 1008402 AAGAGCAGCTCTGGGTCAAACTTTAGTTTGAAGTGATAACCACTCAAGTGCTGGACATAG 1008461
Query 9691 TGTGTGATTATAATGTTAATGGTTTCCCC 9719
| | || | ||| || ||||| || ||
Sbjct 1008462 TCTTCAATCACAATCTTGATGGTCTCTCC 1008490
Score = 91.5 bits (100), Expect = 2e-13
Identities = 112/153 (73%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 10384 CTATCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTC 10443
|| ||||||||||| || | ||||| ||||||||| || || ||||| || | |||
Sbjct 1010658 CTCTCACCTTTCACACCCATTGGAGTGGGGCAGTCATCAGCTACAGGAGGAAGGGATCTG 1010717
Query 10444 GTATAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAG 10503
||||| ||||| | ||| || || ||||||||| | |||||| |||| | | || ||
Sbjct 1010718 GTATAGTAGGAGATATTAGAGAAGGCTTCCCAGTTTTTGTAGTCATAGTGTGCATTATAA 1010777
Query 10504 AGCGGGGGACTGTCAATCATCTCGGACCTGGCT 10536
|| ||||| ||||||| | || ||||||
Sbjct 1010778 GTTGGCGGACTATCAATCAAATGTGATCTGGCT 1010810
Score = 86.0 bits (94), Expect = 9e-12
Identities = 101/136 (74%), Gaps = 2/136 (1%)
Strand=Plus/Plus
Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899
|||||| || ||||||| | |||| || || ||||| |||||||||||| |||
Sbjct 1011709 CTTACGCGTTGAACAGTTTTCACCATAGAATCCTGTCCGGGTACAATCGCACTTATACTT 1011768
Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959
||||| || || |||||||| | ||||| || ||||| |||| |||||||| || ||
Sbjct 1011769 GTCAAATCCTACACTCATGCATTCACCTCGGTTTTGGCATGGGTTGGAACAGCATGGATT 1011828
Query 10960 GGCTGCAATTTAAAAG 10975
|| ||| ||||||
Sbjct 1011829 CACTACAA--TAAAAG 1011842
>seq54
Length=15450234
Score = 89.7 bits (98), Expect = 7e-13
Identities = 170/248 (69%), Gaps = 2/248 (1%)
Strand=Plus/Minus
Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992
|| || || || |||| || || || | || || || || || || || ||||||||
Sbjct 11057291 GTGGCTGTGTTGACGACGTTAAAGCCCATCTCACCACCAAATGTACTTGGCCTCCAGTAC 11057232
Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052
| || || |||||| || | | ||| || || | ||| || || ||||| | |||
Sbjct 11057231 TCTGGAGAACAGATGGGATTTCCTAGGAGACCCTTGAGGGAGAAGGGCGCCCCGATCTCT 11057172
Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111
|| || ||||| || ||||||| ||| | ||||| | || | |||| | |||
Sbjct 11057171 ATCATACTCTCCCCAAAGATGGAGTTGGGCTGGCACTTTTCAA-GAAGCAGCCCTGGGTA 11057113
Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171
|| || | ||| |||| ||| ||||| | ||||||||||||| || || ||| ||||
Sbjct 11057112 GAACTCCAAAGCGTCGATGTCTCCATATAACTCTTCCAACTCGGCTGCCATTTCCGTCTC 11057053
Query 9172 ACCTACAA 9179
|||| ||
Sbjct 11057052 TCCTATAA 11057045
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 723629410153200
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