Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_012783.2 Length=226205 Score E Sequences producing significant alignments: (Bits) Value seq49 143 4e-29 seq31 141 1e-28 seq54 89.7 7e-13 >seq49 Length=17435334 Score = 143 bits (158), Expect = 4e-29 Identities = 311/462 (67%), Gaps = 9/462 (2%) Strand=Plus/Minus Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 |||||||| ||| | |||| | | || || || || || || || || || |||||||| Sbjct 4663619 ATCAGGCAGCAGGGGGTGCCGGTGATAAAGAGTGTTAAAATCAGCAGCGATCCGGTTCTG 4663560 Query 9612 GTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671 |||||| | | ||| || | ||| |||| || |||| | |||||| || || Sbjct 4663559 GTACTGCGACTGTTTGTTGAAGAGCAGCTCTGGGTTCAACTTTAGATTGAAGTGATAACC 4663500 Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAATGATTAG 9731 || | ||||||||||| | | || | | | ||||| || || || | || || Sbjct 4663499 ACTCACGTGCTGGACATAGTCTTCAATCAG--TCTCGATGGTCTCTCCTGTCAGAATGAG 4663442 Query 9732 ACGAGTGGTTTGAAA--CAACTGCTCGTC-ACCCCATTCCGGGTGTTCGTGTTTGAGAAC 9788 | | |||| | ||| || || | |||| || ||||| || ||| | || | Sbjct 4663441 CCTGCCAGCCTGAAGAGCCGCTGGTCATCCATCCCACTCTGGGTGCTCCTGTCTCAGCGC 4663382 Query 9789 ATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCAC 9848 || || |||| ||| || | |||||| || | |||||||||||| | || ||||| Sbjct 4663381 GTC----ACTCTGTCGTGCTCCCGCAGCCAGATCGCGGCGTACATCATCAGGCCTGGCAC 4663326 Query 9849 TAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATA 9908 | |||||| || ||| |||||| ||||| ||||| | ||| || | || | | Sbjct 4663325 CAGACCAAAGACCTCACGCCCCACAGCAAACCGCAGGTGATCAGGGGTGTGAGGAGGGCA 4663266 Query 9909 CAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCTG 9968 | ||| | | || | || ||| |||| || || || |||| || || | ||| ||||| Sbjct 4663265 AATCATTTCCGCCCGAGTGTCTCTGACTGTAGGCGGGTACACCTCTCCATGAATGACCTG 4663206 Query 9969 ATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTG 10010 ||| |||| || ||||||||||| || ||||| ||||| || Sbjct 4663205 ATATTTCAATTTTCCATCCTTGAAAAGGCGCAGTTTATGTTG 4663164 Score = 131 bits (144), Expect = 2e-25 Identities = 211/301 (70%), Gaps = 2/301 (1%) Strand=Plus/Plus Query 8875 AACTCGGAACGCGGCCAACGGACATCCCTTCACATTGGCACAAATGAGGGACTGAATGGT 8934 ||| | ||| || | || ||||| ||||||| || || ||||| |||||||||| Sbjct 9420565 AACACTGAAGGCCGTAAAGGGACAGTCCTTCACGTTATTGCAGATGAGAGACTGAATGGA 9420624 Query 8935 TGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGC 8994 || || || | ||| || ||||| || || || || || ||||| || ||||||||| Sbjct 9420625 GGCTGTGTTGATGATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTG 9420684 Query 8995 CGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGAT 9054 | | | || ||| || |||| || ||||||||||| | || || || | || | Sbjct 9420685 AGAG-ATCATATGGGATTACCCATAAGTCCTTTCAAGGAGGATGGCGCTCCAGGTTCTAC 9420743 Query 9055 GATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAG 9114 ||| |||| |||||||| ||| | ||||| || ||||| || | | | ||| || || Sbjct 9420744 CATGGTCTCCCCGAAGATAGCATCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATATAG 9420803 Query 9115 TTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACC 9174 || | || || | ||| | ||||||||||| | || ||||| || |||||||| || Sbjct 9420804 CTCCATGGCATCAATGTCCCGGTAGAGGGCTTCGGA-TCTGCAGCCATTTCCTTCTCTCC 9420862 Query 9175 T 9175 | Sbjct 9420863 T 9420863 Score = 118 bits (130), Expect = 2e-21 Identities = 307/463 (66%), Gaps = 20/463 (4%) Strand=Plus/Plus Query 9552 ATCAGGCAACAGAGAATGCCAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTG 9611 |||||||| ||| | |||| | | || || || || || || || || || |||||||| Sbjct 9421123 ATCAGGCAGCAGGGGGTGCCGGTGATAAAGAGTGTTAAAATCAGCAGCGATCCGGTTCTG 9421182 Query 9612 GTACTGAAAGGCGGTACCGAACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCC 9671 |||||| | | ||| || | ||| |||| || |||| | |||||| || || Sbjct 9421183 GTACTGCGACTGTTTGTTGAAGAGCAGCTCTGGGTTCAACTTTAGATTGAAGTGATAACC 9421242 Query 9672 GCTGAGTTGCTGGACATACTGTGTGATTATAATGTTAATGGTTTCCCCGGTAATGATTAG 9731 || | ||||||||||| | | || | | | ||||| || || || | || || Sbjct 9421243 ACTCACGTGCTGGACATAGTCTTCAATCAG--TCTCGATGGTCTCTCCTGTCAGAATGAG 9421300 Query 9732 ACGAGTGGTTTGAAA--CAACTGCTCGTC-ACCCCATTCCGGGTGTTCGTGTTTGAGAAC 9788 | | |||| | ||| || || | |||| || ||||| || ||| | || | Sbjct 9421301 CCTGCCAGCCTGAAGAGCCGCTGGTCATCCATCCCACTCTGGGTGCTCCTGTCTCAGCGC 9421360 Query 9789 ATCGCAGACCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCAC 9848 || || |||| ||| || | |||||| || | |||||||||||| | || ||||| Sbjct 9421361 GTC----ACTCTGTCGTGCTCCCGCAGCCAGATCGCGGCGTACATCATCAGGCCTGGCAC 9421416 Query 9849 TAAACCAAACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGG-GCGCAT 9907 | |||||| || ||| |||||| ||||| ||||| | ||| || | || | || Sbjct 9421417 CAGACCAAAGACCTCACGCCCCACAGCAAACCGCAGGTGATCAGGGTGTGAGGAGGGC-- 9421474 Query 9908 ACAGCATATGCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 | | ||| | | || | || ||| ||| || || || |||| || || | ||| |||| Sbjct 9421475 AAATCATTTCCGCCCGAGTGTCTCGGACTGTAGGCGGGTACACCTCTCCATGAATGACCT 9421534 Query 9968 GATACTTCATCTTCCCATCCTTGAACAGACGCAGCTTATGCTG 10010 |||| || |||||||||| || ||||| ||||| || Sbjct 9421535 GATATTT--------CATCCTTGAAAAGGCGCAGTTTATGTTG 9421569 Score = 95.1 bits (104), Expect = 2e-14 Identities = 157/224 (70%), Gaps = 2/224 (1%) Strand=Plus/Minus Query 8947 GATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGAT 9006 ||| || ||||| || || || || || ||||| || ||||||||| | | | || || Sbjct 4664105 GATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTACTGAGAG-ATCATAT 4664047 Query 9007 GACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACC 9066 | || |||| || ||||||||||| | || || || | || | ||| |||| || Sbjct 4664046 GGGATTACCCATAAGTCCTTTCAAGGAGGATGGCGCTCCAGGTTCTACCATGGTCTCCCC 4663987 Query 9067 GAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTC 9126 |||||| ||| | ||||| || ||||| || | | | ||| || || || | || || Sbjct 4663986 GAAGATAGCATCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATATAGCTCCATGGCATC 4663927 Query 9127 GACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCT 9170 | ||| | |||||||||| | ||| ||||| || ||||||| Sbjct 4663926 AATGTCCCGGTAGAGGGCTT-CGGCTCTGCAGCCATTTCCTTCT 4663884 >seq31 Length=29319519 Score = 141 bits (156), Expect = 1e-28 Identities = 170/231 (74%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 9737 TGGTTTGAAACAACTGCTCGTCACCCCATTCCGGGTGTTCGTGTTTGAGAACATCGCAGA 9796 |||| || || | | |||| ||| ||| || |||||||| ||| | || | || || | Sbjct 1008810 TGGTCTGGAAGAGCCGCTCATCATTCCACTCTGGGTGTTCCTGTCTCAGCATGTCACACA 1008869 Query 9797 CCCTGTTGTGTTCTCTCAGCCATATGGTGGCGTACATCATTAAACCCGGCACTAAACCAA 9856 | ||||||||||| | |||||| || |||||||||||||| | || ||||| | ||||| Sbjct 1008870 CTCTGTTGTGTTCCCGCAGCCAGATCGTGGCGTACATCATCAGGCCAGGCACCAGACCAA 1008929 Query 9857 ACACTTCATTCCCCACTGCAAAGCGCAGATCATCGGGCACTTCGGGCGCATACAGCATAT 9916 | || |||| |||||| ||||| ||||| | ||| || | || | || | ||| | Sbjct 1008930 AGACCTCATGCCCCACAGCAAACCGCAGGTGATCAGGGGTGTGAGGAGGGTAAATCATTT 1008989 Query 9917 GCACCTGGGTCTCTTTGACGGTGGGGGGATACATTTCACCGTCAATAACCT 9967 |||||| || ||| |||| || || || |||| || || |||||||||| Sbjct 1008990 CCACCTGAGTGTCTCTGACTGTAGGTGGGTACACCTCTCCATCAATAACCT 1009040 Score = 125 bits (138), Expect = 1e-23 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 8947 GATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTACGCCGGGGAGCAGAT 9006 ||| || ||||| || || || || || ||||| || |||||||| || || || || Sbjct 1007061 GATTTCAAAACCCACTTCTCCTCCAAAAGTGCTTGGCTTCCAGTATTGAGGAGAACATAT 1007120 Query 9007 GACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCGATGATGCTCTCACC 9066 | || |||| || ||||||||||| || || || || || || | ||| |||| || Sbjct 1007121 GGGATTACCCATAAGTCCTTTCAAGGAGAATGGCGCTCCAAGTTCTACCATGGTCTCCCC 1007180 Query 9067 GAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCAGTGTAGAGTTCGACAGCCTC 9126 |||||| || | ||||| || ||||| || | | | ||| || || || | || || Sbjct 1007181 GAAGATAGCGTCAGGACGAGGCTTTTCTACCAGAAGGGCAGGATACAGCTCCATTGCATC 1007240 Query 9127 GACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTCACCT 9175 | ||| || ||||||||||||| ||| ||||| || |||||||| ||| Sbjct 1007241 AATGTCCCCGTAGAGGGCTTCCAGCTCTGCAGCCATTTCCTTCTCTCCT 1007289 Score = 111 bits (122), Expect = 2e-19 Identities = 186/269 (69%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 9451 GTGAACGATTCAACTAATTGGGCTATTCCGTGCTTGATGAGGATGGAATTGTTGTAAACG 9510 ||||| || || | || |||| | ||| |||| || || ||||| |||||||| | Sbjct 1008222 GTGAATGACTCGATGAAGTGGGTCAGTCCATGCTCGACCAGTATGGAGTTGTTGTAGAGA 1008281 Query 9511 AAGTGTTCGTAACCATACTTCGCGTCGCCTATGCGAAAATCATCAGGCAACAGAGAATGC 9570 || |||| | |||| | ||| | ||| |||| |||||||| ||| ||| Sbjct 1008282 AACTGTTTAAAGTTGTACTCCTGGTCTTCAATGTGAAAGGTATCAGGCAGCAGGCGGTGC 1008341 Query 9571 CAGCGGTAGAGGGTATTGAACTCGGCCGCTATTCGGTTCTGGTACTGAAAGGCGGTACCG 9630 ||| | || ||||| |||||||| || || || |||||||||||||| || | | Sbjct 1008342 CAGTGATAAAGGGTGTTGAACTCAGCAGCGATCCGGTTCTGGTACTGGAATTGTTTGTTG 1008401 Query 9631 AACAGTAACTCCGGGTCAAAGATTAGCTGGAAGTGGTACCCGCTGAGTTGCTGGACATAC 9690 || || | ||| |||||||| |||| | |||||| || || || | ||||||||||| Sbjct 1008402 AAGAGCAGCTCTGGGTCAAACTTTAGTTTGAAGTGATAACCACTCAAGTGCTGGACATAG 1008461 Query 9691 TGTGTGATTATAATGTTAATGGTTTCCCC 9719 | | || | ||| || ||||| || || Sbjct 1008462 TCTTCAATCACAATCTTGATGGTCTCTCC 1008490 Score = 91.5 bits (100), Expect = 2e-13 Identities = 112/153 (73%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 10384 CTATCACCTTTCACCCCGAGAGGAGTAGGGCAGTCACGAGGAACCGGAGGCAGAGTTCTC 10443 || ||||||||||| || | ||||| ||||||||| || || ||||| || | ||| Sbjct 1010658 CTCTCACCTTTCACACCCATTGGAGTGGGGCAGTCATCAGCTACAGGAGGAAGGGATCTG 1010717 Query 10444 GTATAATAGGATAGATTCGAAAATGCTTCCCAGCTATTGTAGCCATAATCTAAGTTGTAG 10503 ||||| ||||| | ||| || || ||||||||| | |||||| |||| | | || || Sbjct 1010718 GTATAGTAGGAGATATTAGAGAAGGCTTCCCAGTTTTTGTAGTCATAGTGTGCATTATAA 1010777 Query 10504 AGCGGGGGACTGTCAATCATCTCGGACCTGGCT 10536 || ||||| ||||||| | || |||||| Sbjct 1010778 GTTGGCGGACTATCAATCAAATGTGATCTGGCT 1010810 Score = 86.0 bits (94), Expect = 9e-12 Identities = 101/136 (74%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 10840 CTTACGGGTCGAACAGTGCCGATCATAAAACCCCGTCCGCGTACAATCGCACCAATAACG 10899 |||||| || ||||||| | |||| || || ||||| |||||||||||| ||| Sbjct 1011709 CTTACGCGTTGAACAGTTTTCACCATAGAATCCTGTCCGGGTACAATCGCACTTATACTT 1011768 Query 10900 ATCAAACCCCACCGTCATGCATACCCCTCGATTCTGGCACGGGTGCGAACAGCAAGGGTT 10959 ||||| || || |||||||| | ||||| || ||||| |||| |||||||| || || Sbjct 1011769 GTCAAATCCTACACTCATGCATTCACCTCGGTTTTGGCATGGGTTGGAACAGCATGGATT 1011828 Query 10960 GGCTGCAATTTAAAAG 10975 || ||| |||||| Sbjct 1011829 CACTACAA--TAAAAG 1011842 >seq54 Length=15450234 Score = 89.7 bits (98), Expect = 7e-13 Identities = 170/248 (69%), Gaps = 2/248 (1%) Strand=Plus/Minus Query 8933 GTTGCGGTTTTCACGATGTCTAAACCTACGTCCCCGCCGAAGGTGCTGGGTTTCCAGTAC 8992 || || || || |||| || || || | || || || || || || || |||||||| Sbjct 11057291 GTGGCTGTGTTGACGACGTTAAAGCCCATCTCACCACCAAATGTACTTGGCCTCCAGTAC 11057232 Query 8993 GCCGGGGAGCAGATGACGTTCGCCATGAGCCCTTTCAAGGAAAACGGAGCCCCCAGCTCG 9052 | || || |||||| || | | ||| || || | ||| || || ||||| | ||| Sbjct 11057231 TCTGGAGAACAGATGGGATTTCCTAGGAGACCCTTGAGGGAGAAGGGCGCCCCGATCTCT 11057172 Query 9053 ATGATGCTCTCACCGAAGATGGCACCGGGACGCGGTTTTTCGACGATGAAGCCA-GTGTA 9111 || || ||||| || ||||||| ||| | ||||| | || | |||| | ||| Sbjct 11057171 ATCATACTCTCCCCAAAGATGGAGTTGGGCTGGCACTTTTCAA-GAAGCAGCCCTGGGTA 11057113 Query 9112 GAGTTCGACAGCCTCGACGTCGCCATAGAGGGCTTCCAACTCGGCAGCTATCTCCTTCTC 9171 || || | ||| |||| ||| ||||| | ||||||||||||| || || ||| |||| Sbjct 11057112 GAACTCCAAAGCGTCGATGTCTCCATATAACTCTTCCAACTCGGCTGCCATTTCCGTCTC 11057053 Query 9172 ACCTACAA 9179 |||| || Sbjct 11057052 TCCTATAA 11057045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 723629410153200