Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq73 149 7e-31
seq116 145 9e-30
seq3 143 3e-29
seq42 111 2e-19
seq1 109 6e-19
seq4 100 3e-16
seq30 91.5 2e-13
seq57 89.7 6e-13
seq5 87.8 2e-12
seq58 86.0 7e-12
seq45 86.0 7e-12
>seq73
Length=12918409
Score = 149 bits (164), Expect = 7e-31
Identities = 165/219 (75%), Gaps = 1/219 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
||||||||||| |||| || ||| || ||||| | ||| || || |||||||| |
Sbjct 707551 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCAGAGAGAGTGCGGCCA 707493
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || |||| ||||| |||||||||| ||||||||||| | || | || ||||||
Sbjct 707492 TCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTG 707433
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
|| |||||| |||||| || | | ||||| || | ||| || | | ||||||
Sbjct 707432 TCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATG 707373
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|||||||||||||| || || ||||||||||||||||||
Sbjct 707372 GTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTTG 707334
>seq116
Length=7179089
Score = 145 bits (160), Expect = 9e-30
Identities = 170/230 (74%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| ||||| | ||| | |||||| |||| || |||||| ||||| |||||||| ||
Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
| ||||| | || || |||||||||||||| || |||| | ||||||||| | ||
Sbjct 4848424 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4848483
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| || ||| |||||| |||||| ||||| || | | ||||| || | |||||
Sbjct 4848484 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4848543
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|||| |||||||| ||||| ||||| || || |||||||| ||||| ||
Sbjct 4848544 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTT 4848593
>seq3
Length=68754498
Score = 143 bits (158), Expect = 3e-29
Identities = 163/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| |||| || ||| || ||||| ||||| || || |||||||| |
Sbjct 7045143 CGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA 7045202
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||| ||||| |||| ||||| ||||||||||| | || | || ||||||
Sbjct 7045203 TCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTG 7045262
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
|| |||||| ||||| || | | ||||| || | ||| || || | ||||||
Sbjct 7045263 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATG 7045322
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| ||||||||||| || || ||| ||||||||||||||
Sbjct 7045323 GTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCATTTTG 7045361
>seq42
Length=18862759
Score = 111 bits (122), Expect = 2e-19
Identities = 156/219 (71%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
||||||||||| | || | | ||| || ||||| ||||| || || |||||||| |
Sbjct 11621994 CGCAACACCAGGTACAGGGGAGACTCTTTCTGGATGTTGTATTCAGAGAGAGTGCGGCCA 11622053
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||| | |||| |||||||||| ||||||||||| | || | || ||||||
Sbjct 11622054 TCCTCCAGCCGTGTGCCAGCGAATATCAGCCGCTGCTGGTCAGGTGGGATGCCTTCCTTG 11622113
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
|| |||||| ||||| | ||||| || | ||| || || | ||||||
Sbjct 11622114 TCTTGGATCTTGGCCTTGACATTTATGTTGGTGTCACTGGGTTCAACTTCTAGTGTGATG 11622173
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
|| | | ||||| || || ||||||||||||||||||
Sbjct 11622174 GTCTCACTTGTCAGGGTCTTCACAAAGATTTGCATTTTG 11622212
>seq1
Length=77654946
Score = 109 bits (120), Expect = 6e-19
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| |||| || ||| | ||||| |||| || || |||||| |
Sbjct 73228536 CGCACCACCAGGTGCAGGGTGGGCTCTCTCTGGATGCTGTAATCAGACTGAGTGCAGCCA 73228477
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||| ||||| |||| ||||| ||||||||||| | || | || ||||||
Sbjct 73228476 TCCTCCCGCTATTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTG 73228417
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
|| |||||| ||||| || | ||||| || | ||| || || | ||||||
Sbjct 73228416 TCTTGGATCTTAGCCTTGACATTCTTGATGGTGTCACTAGGTTCAACCTCTAGAGTGATG 73228357
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596
|| |||||| |||| || || |||||||||||||||||
Sbjct 73228356 GTCTTGCCCATCAGGGTCTTCACAAAGATTTGCATTTT 73228319
>seq4
Length=53591480
Score = 100 bits (110), Expect = 3e-16
Identities = 150/213 (70%), Gaps = 0/213 (0%)
Strand=Plus/Minus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
|| ||| ||||| | || ||||||||||||||||||||| || | ||| ||||| ||
Sbjct 13584064 CAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGCTCATC 13584005
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| || ||||| || || || |||| | |||||| || | || | | ||||| ||
Sbjct 13584004 TTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 13583945
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560
| |||||| ||| | | | | ||||| | ||| ||||| | |||||||||
Sbjct 13583944 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGATGGT 13583885
Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| ||| | || ||||| ||||| || |||||
Sbjct 13583884 CTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852
>seq30
Length=29245334
Score = 91.5 bits (100), Expect = 2e-13
Identities = 140/196 (71%), Gaps = 3/196 (2%)
Strand=Plus/Minus
Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462
||||| ||||| |||||||||| ||||||| | || || || ||||||| | |||
Sbjct 6909036 CCTTTCTGGATGCTGTAGTCGGAGAGAGTGCAGCCATCCTCCAGTTGCTTGCTGAGGAAC 6908977
Query 46463 ATCAAGCGCTGCTGGTC-GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||||| |||| | | || |||||||| |||||| ||||| |
Sbjct 6908976 ATCAGCTGCTGCTGGTCAGGCCAG-ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 6908918
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||| || || | || | | ||||| |||||| |||| || || ||
Sbjct 6908917 CTCGATGGTGTCACTGAGCTCAGCCTCGAGGGCAATGGTCTTGCCCATCAGGGTCTTCAC 6908858
Query 46582 AAAGATTTGCATTTTG 46597
|||||||||||| |||
Sbjct 6908857 AAAGATTTGCATCTTG 6908842
>seq57
Length=15126812
Score = 89.7 bits (98), Expect = 6e-13
Identities = 106/144 (74%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425
||| || || | ||| | ||||| |||| || ||| || ||||| ||||| || ||
Sbjct 1409832 GCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 1409773
Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485
|||||||| | || || ||||||||||| ||||| || | ||||||||||| | ||
Sbjct 1409772 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGG 1409713
Query 46486 CACGCTCTCCTTGTCCATGATCTT 46509
| || ||||||||| ||||||
Sbjct 1409712 GATGCCTTCCTTGTCCTGGATCTT 1409689
>seq5
Length=53451024
Score = 87.8 bits (96), Expect = 2e-12
Identities = 151/218 (69%), Gaps = 1/218 (0%)
Strand=Plus/Plus
Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440
||||||||| |||| || || || |||| |||||| || || |||||||| | ||
Sbjct 36801418 CAACACCAGGTGCAGGGTGGAGTCTTTCTGGACATTGTAATCAGAGAGAGTGCGGCCATC 36801477
Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500
|| |||| | ||| || | | || | || |||||| | || | || ||||||||
Sbjct 36801478 CTCCTGCTGTTGGCCAGCAAGTTTCGGCCACTTCTGGTCTGGTGGGATGCCTTCCTTGTC 36801537
Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560
|||||| ||||| || | | ||||| || | ||| | || | |||| ||
Sbjct 36801538 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAGCCTCTAGGGTGACGGC 36801597
Query 46561 -TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||||||| |||| || || |||||| |||||||||||
Sbjct 36801598 CTTTGCCCCTCAGGGTCTTCACAAAGGTTTGCATTTTG 36801635
>seq58
Length=14941408
Score = 86.0 bits (94), Expect = 7e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|| |||||| ||||||||||| || | ||| ||| | || || || ||||| || || ||
Sbjct 5525713 CTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAA 5525772
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
||||| | |||||| || | || | | ||||| ||| |||||| ||| | |
Sbjct 5525773 GATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT 5525832
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | ||||| | ||| || || | ||||||||| || ||||| || ||||| ||
Sbjct 5525833 TTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCAC 5525892
Query 46582 AAAGATTTGCAT 46593
|| || |||||
Sbjct 5525893 GAAAATCTGCAT 5525904
>seq45
Length=18186770
Score = 86.0 bits (94), Expect = 7e-12
Identities = 158/227 (70%), Gaps = 6/227 (3%)
Strand=Plus/Plus
Query 46373 CTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTG 46432
|| |||| || ||||| |||| || ||||| |||| ||||| || || ||||||
Sbjct 11996456 CTAAAACACAGGACCAGGTGCAGGGTGGACTCCT---GGATGTTGTAATCAGAAAGAGTG 11996512
Query 46433 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTC 46492
| | || || ||||| |||| || || | | ||||||||||| | | ||
Sbjct 11996513 TGACCATCTTCTGGCTGCCTGCCCGCAAAGAGGAGACGCTGCTGGTCTGGGATGATGCCT 11996572
Query 46493 TCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCAC 46551
||||| | | |||||| ||| |||| || | ||| |||| | ||| | ||||
Sbjct 11996573 TCCTTATTCTGGATCTTGGCCTTC-GCGTAACCGATGGTGGCGCTGGGCTCCGCCTCCAG 11996631
Query 46552 CGTGATGGTTTTGCCCGTCAGCG-TTTTAACAAAGATTTGCATTTTG 46597
|||||||| ||||| ||||||| |||| || |||| ||||||||||
Sbjct 11996632 AGTGATGGTCTTGCCGGTCAGCGTTTTTCACGAAGACTTGCATTTTG 11996678
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565161400398960
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