Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq73 149 7e-31 seq116 145 9e-30 seq3 143 3e-29 seq42 111 2e-19 seq1 109 6e-19 seq4 100 3e-16 seq30 91.5 2e-13 seq57 89.7 6e-13 seq5 87.8 2e-12 seq58 86.0 7e-12 seq45 86.0 7e-12 >seq73 Length=12918409 Score = 149 bits (164), Expect = 7e-31 Identities = 165/219 (75%), Gaps = 1/219 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||||||||| |||| || ||| || ||||| | ||| || || |||||||| | Sbjct 707551 CGCAACACCAGGTGCAGGGTGGACTCTTTCTGGATGT-GTAATCAGAGAGAGTGCGGCCA 707493 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || |||| ||||| |||||||||| ||||||||||| | || | || |||||| Sbjct 707492 TCCTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTG 707433 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| |||||| || | | ||||| || | ||| || | | |||||| Sbjct 707432 TCTTGGATCTTGGTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATG 707373 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 |||||||||||||| || || |||||||||||||||||| Sbjct 707372 GTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTTG 707334 >seq116 Length=7179089 Score = 145 bits (160), Expect = 9e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || ||||| | ||| | |||||| |||| || |||||| ||||| |||||||| || Sbjct 4848364 CCACCTCTGAGACGGAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAC 4848423 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 | ||||| | || || |||||||||||||| || |||| | ||||||||| | || Sbjct 4848424 AAGGTGCGGCCATCTTCCAGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGG 4848483 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || ||| |||||| |||||| ||||| || | | ||||| || | ||||| Sbjct 4848484 ATGCCCTCTTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACC 4848543 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 |||| |||||||| ||||| ||||| || || |||||||| ||||| || Sbjct 4848544 TCCAGGGTGATGGTCTTGCCGGTCAGGGTCTTCACAAAGATCTGCATCTT 4848593 >seq3 Length=68754498 Score = 143 bits (158), Expect = 3e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || ||| || ||||| ||||| || || |||||||| | Sbjct 7045143 CGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCA 7045202 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| ||||| |||| ||||| ||||||||||| | || | || |||||| Sbjct 7045203 TCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTG 7045262 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||||| || | | ||||| || | ||| || || | |||||| Sbjct 7045263 TCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATG 7045322 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || ||||||||||| || || ||| |||||||||||||| Sbjct 7045323 GTCTTGCCCGTCAGGGTCTTCACAGAGATTTGCATTTTG 7045361 >seq42 Length=18862759 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||||||||| | || | | ||| || ||||| ||||| || || |||||||| | Sbjct 11621994 CGCAACACCAGGTACAGGGGAGACTCTTTCTGGATGTTGTATTCAGAGAGAGTGCGGCCA 11622053 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||| | |||| |||||||||| ||||||||||| | || | || |||||| Sbjct 11622054 TCCTCCAGCCGTGTGCCAGCGAATATCAGCCGCTGCTGGTCAGGTGGGATGCCTTCCTTG 11622113 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||||| | ||||| || | ||| || || | |||||| Sbjct 11622114 TCTTGGATCTTGGCCTTGACATTTATGTTGGTGTCACTGGGTTCAACTTCTAGTGTGATG 11622173 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 || | | ||||| || || |||||||||||||||||| Sbjct 11622174 GTCTCACTTGTCAGGGTCTTCACAAAGATTTGCATTTTG 11622212 >seq1 Length=77654946 Score = 109 bits (120), Expect = 6e-19 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 |||| |||||| |||| || ||| | ||||| |||| || || |||||| | Sbjct 73228536 CGCACCACCAGGTGCAGGGTGGGCTCTCTCTGGATGCTGTAATCAGACTGAGTGCAGCCA 73228477 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||| ||||| |||| ||||| ||||||||||| | || | || |||||| Sbjct 73228476 TCCTCCCGCTATTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTG 73228417 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 || |||||| ||||| || | ||||| || | ||| || || | |||||| Sbjct 73228416 TCTTGGATCTTAGCCTTGACATTCTTGATGGTGTCACTAGGTTCAACCTCTAGAGTGATG 73228357 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || |||||| |||| || || ||||||||||||||||| Sbjct 73228356 GTCTTGCCCATCAGGGTCTTCACAAAGATTTGCATTTT 73228319 >seq4 Length=53591480 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 || ||| ||||| | || ||||||||||||||||||||| || | ||| ||||| || Sbjct 13584064 CAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGCTCATC 13584005 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || || ||||| || || || |||| | |||||| || | || | | ||||| || Sbjct 13584004 TTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 13583945 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 | |||||| ||| | | | | ||||| | ||| ||||| | ||||||||| Sbjct 13583944 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGATGGT 13583885 Query 46561 TTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||| | || ||||| ||||| || ||||| Sbjct 13583884 CTTCCCCATAAGGGTTTTCACAAAAATCTGCAT 13583852 >seq30 Length=29245334 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 46404 CCTTT-TGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| ||||| |||||||||| ||||||| | || || || ||||||| | ||| Sbjct 6909036 CCTTTCTGGATGCTGTAGTCGGAGAGAGTGCAGCCATCCTCCAGTTGCTTGCTGAGGAAC 6908977 Query 46463 ATCAAGCGCTGCTGGTC-GGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| |||||||||| |||| | | || |||||||| |||||| ||||| | Sbjct 6908976 ATCAGCTGCTGCTGGTCAGGCCAG-ATGCCTTCCTTGTCTTGGATCTTGGCCTTGACATT 6908918 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | | ||||| || || | || | | ||||| |||||| |||| || || || Sbjct 6908917 CTCGATGGTGTCACTGAGCTCAGCCTCGAGGGCAATGGTCTTGCCCATCAGGGTCTTCAC 6908858 Query 46582 AAAGATTTGCATTTTG 46597 |||||||||||| ||| Sbjct 6908857 AAAGATTTGCATCTTG 6908842 >seq57 Length=15126812 Score = 89.7 bits (98), Expect = 6e-13 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 46366 GCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGA 46425 ||| || || | ||| | ||||| |||| || ||| || ||||| ||||| || || Sbjct 1409832 GCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 1409773 Query 46426 TAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGG 46485 |||||||| | || || ||||||||||| ||||| || | ||||||||||| | || Sbjct 1409772 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGG 1409713 Query 46486 CACGCTCTCCTTGTCCATGATCTT 46509 | || ||||||||| |||||| Sbjct 1409712 GATGCCTTCCTTGTCCTGGATCTT 1409689 >seq5 Length=53451024 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/218 (69%), Gaps = 1/218 (0%) Strand=Plus/Plus Query 46381 CAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTC 46440 ||||||||| |||| || || || |||| |||||| || || |||||||| | || Sbjct 36801418 CAACACCAGGTGCAGGGTGGAGTCTTTCTGGACATTGTAATCAGAGAGAGTGCGGCCATC 36801477 Query 46441 GTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTC 46500 || |||| | ||| || | | || | || |||||| | || | || |||||||| Sbjct 36801478 CTCCTGCTGTTGGCCAGCAAGTTTCGGCCACTTCTGGTCTGGTGGGATGCCTTCCTTGTC 36801537 Query 46501 CATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGT 46560 |||||| ||||| || | | ||||| || | ||| | || | |||| || Sbjct 36801538 TTGGATCTTGGCCTTGACATTCTCGATGGTGTCACTGGGTTCAGCCTCTAGGGTGACGGC 36801597 Query 46561 -TTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597 ||||||| |||| || || |||||| ||||||||||| Sbjct 36801598 CTTTGCCCCTCAGGGTCTTCACAAAGGTTTGCATTTTG 36801635 >seq58 Length=14941408 Score = 86.0 bits (94), Expect = 7e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 || |||||| ||||||||||| || | ||| ||| | || || || ||||| || || || Sbjct 5525713 CTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTGCTTTCCAGCAAA 5525772 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| | |||||| || | || | | ||||| ||| |||||| ||| | | Sbjct 5525773 GATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT 5525832 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | ||||| | ||| || || | ||||||||| || ||||| || ||||| || Sbjct 5525833 TTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGTAAGGGTTTTCAC 5525892 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 5525893 GAAAATCTGCAT 5525904 >seq45 Length=18186770 Score = 86.0 bits (94), Expect = 7e-12 Identities = 158/227 (70%), Gaps = 6/227 (3%) Strand=Plus/Plus Query 46373 CTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTG 46432 || |||| || ||||| |||| || ||||| |||| ||||| || || |||||| Sbjct 11996456 CTAAAACACAGGACCAGGTGCAGGGTGGACTCCT---GGATGTTGTAATCAGAAAGAGTG 11996512 Query 46433 CGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTC 46492 | | || || ||||| |||| || || | | ||||||||||| | | || Sbjct 11996513 TGACCATCTTCTGGCTGCCTGCCCGCAAAGAGGAGACGCTGCTGGTCTGGGATGATGCCT 11996572 Query 46493 TCCTTGTCCATGATCTTCTTCTTGAGCGTCGCC-ACCGTGTCGCTCGATTCCACATCCAC 46551 ||||| | | |||||| ||| |||| || | ||| |||| | ||| | |||| Sbjct 11996573 TCCTTATTCTGGATCTTGGCCTTC-GCGTAACCGATGGTGGCGCTGGGCTCCGCCTCCAG 11996631 Query 46552 CGTGATGGTTTTGCCCGTCAGCG-TTTTAACAAAGATTTGCATTTTG 46597 |||||||| ||||| ||||||| |||| || |||| |||||||||| Sbjct 11996632 AGTGATGGTCTTGCCGGTCAGCGTTTTTCACGAAGACTTGCATTTTG 11996678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565161400398960