Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq116 134 1e-26
seq3 120 3e-22
seq73 114 1e-20
seq57 84.2 2e-11
seq83 82.4 8e-11
seq4 82.4 8e-11
>seq116
Length=7179089
Score = 134 bits (148), Expect = 1e-26
Identities = 170/231 (74%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
|| ||||| || || || || || || || ||||| ||||||||| | || || ||| ||
Sbjct 4848593 AAGATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 4848534
Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359
| |||| | | | |||| | || | ||| |||| ||||||||||| || ||| | ||
Sbjct 4848533 AGTGACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGCATCCCCCCTGA 4848475
Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419
||| ||| |||| || | || ||||| |||||||| || | |||||| | |||||
Sbjct 4848474 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCTGACTA 4848415
Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470
||||||||| ||||| | || ||||| ||||||| ||| | ||||| ||
Sbjct 4848414 CAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGG 4848364
>seq3
Length=68754498
Score = 120 bits (132), Expect = 3e-22
Identities = 165/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| | || || || || |||||||| ||||||||| | || || || ||
Sbjct 7045360 AAAATGCAAATCTCTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAGGTTGAACCC 7045301
Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360
| |||| | | | | | || | || |||| ||||| || || ||||| | |||
Sbjct 7045300 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 7045241
Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420
|| |||||||| || ||| |||||||||||||| || | ||||| ||| || |||
Sbjct 7045240 CAGCAGCGGCTGATACTCGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGATTAC 7045181
Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||| || || | || ||||| ||||| |||| || | || |||
Sbjct 7045180 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGGTGCGCCTGCGTGGTGGC 7045130
>seq73
Length=12918409
Score = 114 bits (126), Expect = 1e-20
Identities = 168/233 (72%), Gaps = 5/233 (2%)
Strand=Plus/Plus
Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300
||||||||||| || || || || || |||||||||||||||||| | | || || ||
Sbjct 707335 AAAATGCAAATCTTTGTGAAGACCCTGACGGGCAAAACCATCACCCTACAGGTTGAACCC 707394
Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358
| |||| | | | || | | |||| || |||| ||||| || || ||||| | |
Sbjct 707395 AGTGACACCATCGAGAATG--TCAAGACCAAGATCCAAGACAAGGAAGGCATTCCTCCAG 707452
Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418
|||| |||||||| || | ||| |||||||||| ||| || | ||||| ||| || |
Sbjct 707453 ACCAGCAGCGGCTGATATTCGCTGGCAAACAGCGGGAGGATGGCCGCACTCTCTCTGATT 707512
Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
|| ||||||| || || | || ||||| ||||| |||| || | || |||
Sbjct 707513 AC-ACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGTGCGGTGGC 707564
>seq57
Length=15126812
Score = 84.2 bits (92), Expect = 2e-11
Identities = 105/144 (73%), Gaps = 0/144 (0%)
Strand=Plus/Plus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| || || || ||| | ||||| ||||| ||||| | ||| |||||
Sbjct 1409689 AAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAG 1409748
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
|||||||| || | ||||| || || ||||||||||| || || | || |||||
Sbjct 1409749 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACCCTGCAC 1409808
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471
|||| || ||| | || || |||
Sbjct 1409809 CTGGTCCTCCGTCTTAGGGGTGGC 1409832
>seq83
Length=10591344
Score = 82.4 bits (90), Expect = 8e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433
|| || ||| || || || ||||||||| | ||||| || || ||||| ||||| ||
Sbjct 7359221 GCACGGGTCTCTGAACGGGCTCACCTCCTCCGCCGTCCAGAAGGAGGCCTCTGCTTTCTT 7359280
Query 133434 GTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493
|||||| ||| || || |||| || ||||| || ||||| ||||||||||||||
Sbjct 7359281 GTACATCTGCCAGATATCATGGTATTCGATAGGAAAGATAACAAAGCGGCGGGGGTTTTC 7359340
Query 133494 GCGCA 133498
||||
Sbjct 7359341 TCGCA 7359345
>seq4
Length=53591480
Score = 82.4 bits (90), Expect = 8e-11
Identities = 146/213 (69%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || || || ||||| || | ||| || |||||||| | || || || || |
Sbjct 13583852 ATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACGCTTGATGTTGAACCCTCA 13583911
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | ||| | || | || |||| || || || |||||||| | || ||
Sbjct 13583912 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 13583971
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||| |||| || | || || || || ||||| || ||||| || | ||||||||
Sbjct 13583972 CAGAGGCTGATCTTTGCTGGAAAGCAACTGGAAGATGAGCGTACTTTGTCTGACTACAAT 13584031
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
||||||||||| | || || ||| | ||||||
Sbjct 13584032 ATCCAAAAGGAGTCCACCCTTCATCTTGTGCTG 13584064
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500104663960320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |