Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq116 134 1e-26 seq3 120 3e-22 seq73 114 1e-20 seq57 84.2 2e-11 seq83 82.4 8e-11 seq4 82.4 8e-11 >seq116 Length=7179089 Score = 134 bits (148), Expect = 1e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || || || || || || || ||||| ||||||||| | || || ||| || Sbjct 4848593 AAGATGCAGATCTTTGTGAAGACCCTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCC 4848534 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | |||| | || | ||| |||| ||||||||||| || ||| | || Sbjct 4848533 AGTGACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAAGAGGGCATCCCCCCTGA 4848475 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||| |||| || | || ||||| |||||||| || | |||||| | ||||| Sbjct 4848474 CCAGCAGAGGCTGATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGCACCTTGTCTGACTA 4848415 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || ||||| ||||||| ||| | ||||| || Sbjct 4848414 CAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTCCGTCTCAGAGGTGG 4848364 >seq3 Length=68754498 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| | || || || || |||||||| ||||||||| | || || || || Sbjct 7045360 AAAATGCAAATCTCTGTGAAGACCCTGACGGGCAAGACCATCACCCTAGAGGTTGAACCC 7045301 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 | |||| | | | | | || | || |||| ||||| || || ||||| | ||| Sbjct 7045300 AGTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCACCAGAC 7045241 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || |||||||| || ||| |||||||||||||| || | ||||| ||| || ||| Sbjct 7045240 CAGCAGCGGCTGATACTCGCTGGCAAACAGCTGGAGGATGGCCGCACTCTCTCTGATTAC 7045181 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||| || || | || ||||| ||||| |||| || | || ||| Sbjct 7045180 AACATCCAGAAAGAGTCCACCCTGCACCTGGTGGTGCGCCTGCGTGGTGGC 7045130 >seq73 Length=12918409 Score = 114 bits (126), Expect = 1e-20 Identities = 168/233 (72%), Gaps = 5/233 (2%) Strand=Plus/Plus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || || || || || |||||||||||||||||| | | || || || Sbjct 707335 AAAATGCAAATCTTTGTGAAGACCCTGACGGGCAAAACCATCACCCTACAGGTTGAACCC 707394 Query 38301 ACCGACAGCGT-GCAAACGCTTAAAGA-AAAAATCCTCGACAAAGAGGGAATTCCCGCCG 38358 | |||| | | | || | | |||| || |||| ||||| || || ||||| | | Sbjct 707395 AGTGACACCATCGAGAATG--TCAAGACCAAGATCCAAGACAAGGAAGGCATTCCTCCAG 707452 Query 38359 ACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 38418 |||| |||||||| || | ||| |||||||||| ||| || | ||||| ||| || | Sbjct 707453 ACCAGCAGCGGCTGATATTCGCTGGCAAACAGCGGGAGGATGGCCGCACTCTCTCTGATT 707512 Query 38419 ACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 || ||||||| || || | || ||||| ||||| |||| || | || ||| Sbjct 707513 AC-ACATCCAGAAAGAGTCCACCCTGCACCTGGTGTTGCGCCTGTGCGGTGGC 707564 >seq57 Length=15126812 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| || || || ||| | ||||| ||||| ||||| | ||| ||||| Sbjct 1409689 AAGATCCAGGACAAGGAAGGCATCCCCCCTGACCAGCAGCGTCTCATCTTCGCTGGCAAG 1409748 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 |||||||| || | ||||| || || ||||||||||| || || | || ||||| Sbjct 1409749 CAGCTGGAAGATGGCCGCACTCTTTCTGATTACAACATCCAGAAAGAGTCCACCCTGCAC 1409808 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||| || ||| | || || ||| Sbjct 1409809 CTGGTCCTCCGTCTTAGGGGTGGC 1409832 >seq83 Length=10591344 Score = 82.4 bits (90), Expect = 8e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 133374 GCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCTCGGCTTTTTT 133433 || || ||| || || || ||||||||| | ||||| || || ||||| ||||| || Sbjct 7359221 GCACGGGTCTCTGAACGGGCTCACCTCCTCCGCCGTCCAGAAGGAGGCCTCTGCTTTCTT 7359280 Query 133434 GTACATACTCCACATGTCCGAATATTGTATGGGAAAAATCACAAACCGGCGGGGGTTTTC 133493 |||||| ||| || || |||| || ||||| || ||||| |||||||||||||| Sbjct 7359281 GTACATCTGCCAGATATCATGGTATTCGATAGGAAAGATAACAAAGCGGCGGGGGTTTTC 7359340 Query 133494 GCGCA 133498 |||| Sbjct 7359341 TCGCA 7359345 >seq4 Length=53591480 Score = 82.4 bits (90), Expect = 8e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || ||||| || | ||| || |||||||| | || || || || | Sbjct 13583852 ATGCAGATTTTTGTGAAAACCCTTATGGGGAAGACCATCACGCTTGATGTTGAACCCTCA 13583911 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| | || | || |||| || || || |||||||| | || || Sbjct 13583912 GACACTATAGAAAATGTAAAGGCCAAGATCCAGGATAAGGAAGGAATTCCTCCTGATCAG 13583971 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| |||| || | || || || || ||||| || ||||| || | |||||||| Sbjct 13583972 CAGAGGCTGATCTTTGCTGGAAAGCAACTGGAAGATGAGCGTACTTTGTCTGACTACAAT 13584031 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 ||||||||||| | || || ||| | |||||| Sbjct 13584032 ATCCAAAAGGAGTCCACCCTTCATCTTGTGCTG 13584064 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500104663960320