Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 4e-15 >seq3 Length=68754498 Score = 96.9 bits (106), Expect = 4e-15 Identities = 113/153 (74%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 106492 CTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCC 106551 |||||| || || ||||||| |||||||| ||||||||| || || || || || Sbjct 19123001 CTCATCTTTGCTGGTATACTCTACTATTTCTGTGCACAAGTTGCTACATTTGATGGTTCC 19123060 Query 106552 CAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCC 106611 || |||| || || ||||| ||| || | ||| |||||||||||||| || || || Sbjct 19123061 CAGGTTCTGCTGATTGCTCTTCCGGTTACAGGAATCTTTGTAGAGCATGTACGGGGTGCC 19123120 Query 106612 CGTCTCCGTCTGTGACTTGAGAATTGCCTTCCA 106644 |||||| ||||| |||| || || || | ||| Sbjct 19123121 CGTCTCTGTCTGCGACTCGATGATGGCATACCA 19123153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589900429865520