Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq116 109 4e-19 seq3 109 4e-19 seq73 107 1e-18 >seq116 Length=7179089 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| || ||||| ||||| ||||| || | | | || |||| ||| Sbjct 4848382 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCC 4848441 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| || |||||||| || || | |||||||| | || | ||||| ||||| Sbjct 4848442 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 4848501 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| |||||| | || | |||| || ||| || || | ||| ||||| || Sbjct 4848502 ATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 4848561 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985 || || || |||||||||||||||||||| ||| Sbjct 4848562 CCGGTCAGGGTCTTCACAAAGATCTGCATCTTC 4848594 >seq3 Length=68754498 Score = 109 bits (120), Expect = 4e-19 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||| ||| | ||| |||||||| ||||| || || || || | || |||| ||| Sbjct 7045149 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCCTCC 7045208 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 |||||||| || || | ||| || || ||||||||| | || | || |||||||| Sbjct 7045209 AGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGG 7045268 Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950 ||||| ||||| || || || | |||| || ||||| || | ||| ||||| | Sbjct 7045269 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATGGTCT 7045326 Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTA 34988 | ||||| || ||||||||| |||| ||||| || ||| Sbjct 7045327 TGCCCGTCAGGGTCTTCACAGAGATTTGCATTTTGGTA 7045364 >seq73 Length=12918409 Score = 107 bits (118), Expect = 1e-18 Identities = 159/222 (72%), Gaps = 5/222 (2%) Strand=Plus/Minus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| |||| ||| | ||| |||||||| |||| || || || || | || |||| Sbjct 707549 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTG-TAATCAGAGAGAGTGCGGCCATC 707491 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 ||| ||||||| || || ||||| || || ||||||||| | || | || |||||||| Sbjct 707490 CTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTC 707431 Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946 ||||| ||||| || || || | |||| || ||||| | | ||| ||| Sbjct 707430 TTGGATCTTGGTCTTGAC--ATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATG 707373 Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTA 34988 ||||| ||||| || |||||||||||||| ||||| || ||| Sbjct 707372 GTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTTGGTA 707331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324590482368144