Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq116 109 4e-19
seq3 109 4e-19
seq73 107 1e-18
>seq116
Length=7179089
Score = 109 bits (120), Expect = 4e-19
Identities = 152/213 (71%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| || ||||| ||||| ||||| || | | | || |||| |||
Sbjct 4848382 ACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCAGACAAGGTGCGGCCATCTTCC 4848441
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
||||| || |||||||| || || | |||||||| | || | ||||| |||||
Sbjct 4848442 AGCTGCTTGCCGGCAAAGATCAGCCTCTGCTGGTCAGGGGGGATGCCCTCTTTGTCCTGG 4848501
Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952
||||| |||||| | || | |||| || ||| || || | ||| ||||| ||
Sbjct 4848502 ATCTTTGCCTTGACGTTCTCGATGGTGTCACTGGGCTCCACCTCCAGGGTGATGGTCTTG 4848561
Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCATATTC 34985
|| || || |||||||||||||||||||| |||
Sbjct 4848562 CCGGTCAGGGTCTTCACAAAGATCTGCATCTTC 4848594
>seq3
Length=68754498
Score = 109 bits (120), Expect = 4e-19
Identities = 156/218 (72%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832
|||| ||| | ||| |||||||| ||||| || || || || | || |||| |||
Sbjct 7045149 ACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCCTCC 7045208
Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892
|||||||| || || | ||| || || ||||||||| | || | || ||||||||
Sbjct 7045209 AGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGG 7045268
Query 34893 ATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTT 34950
||||| ||||| || || || | |||| || ||||| || | ||| ||||| |
Sbjct 7045269 ATCTTGGCCTTGAC--ATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATGGTCT 7045326
Query 34951 TTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTA 34988
| ||||| || ||||||||| |||| ||||| || |||
Sbjct 7045327 TGCCCGTCAGGGTCTTCACAGAGATTTGCATTTTGGTA 7045364
>seq73
Length=12918409
Score = 107 bits (118), Expect = 1e-18
Identities = 159/222 (72%), Gaps = 5/222 (2%)
Strand=Plus/Minus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
||| |||| ||| | ||| |||||||| |||| || || || || | || ||||
Sbjct 707549 CAACACCAGGTGCAGGGTGGACTCTTTCTGGATGTG-TAATCAGAGAGAGTGCGGCCATC 707491
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
||| ||||||| || || ||||| || || ||||||||| | || | || ||||||||
Sbjct 707490 CTCCCGCTGTTTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTC 707431
Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
||||| ||||| || || || | |||| || ||||| | | ||| |||
Sbjct 707430 TTGGATCTTGGTCTTGAC--ATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATG 707373
Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATTCGTA 34988
||||| ||||| || |||||||||||||| ||||| || |||
Sbjct 707372 GTTTTGCCCGTCAGGGTCTTCACAAAGATTTGCATTTTGGTA 707331
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324590482368144
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |