Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq57 293 3e-74
seq6 176 5e-39
seq175 159 4e-34
seq7443 131 2e-25
seq83 114 1e-20
seq3 93.3 5e-14
>seq57
Length=15126812
Score = 293 bits (324), Expect = 3e-74
Identities = 637/938 (68%), Gaps = 29/938 (3%)
Strand=Plus/Minus
Query 18619 TCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGAT 18676
||| ||||||| |||||||||||| || | || ||| |||||||| | || |
Sbjct 10750356 TCAGCATCCAAGCTGAAAGAATTCTCTG--TTGGGTTTGACATCACTCCCATCCTCTGGT 10750299
Query 18677 ATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAA 18736
|| | ||||| || ||| |||| ||||| ||||| |||| ||| ||| ||||| |
Sbjct 10750298 GCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTCTAGTGAAATAATCTCCATGA 10750239
Query 18737 AATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTAT 18796
| |||||||| |||| ||| | | || || || || || | ||| | | || || |
Sbjct 10750238 AGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAACCCATTTCCAGCATAAGCCTGT 10750179
Query 18797 CCGCTACAAATTTAATATATGTG-TTCATCATATCACAATTCATTCCTATTAATTTAACA 18855
| || ||||||| ||| | | || ||||| | | ||||||||||| || || || |||
Sbjct 10750178 CTGCCACAAATTCAATGT-TCTGCTTCATTAAAGTGCAATTCATTCCAATGAACTTCACA 10750120
Query 18856 GGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC- 18914
|| | || ||||| || || || | |||||| | || || | ||| | | || | |
Sbjct 10750119 GGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTGACAGCAT-TGACA-ATTATTTCCT 10750062
Query 18915 -AACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCAC 18973
|||| | || || ||||| || || || |||| || || | ||||||||
Sbjct 10750061 TGACTCACTACTCTAATGGTTTGTATACCAGGTGCTTGAACACCAGGCAGGTAAAATCAC 10750002
Query 18974 AATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTC 19033
||||| ||||| |||| ||| || | ||| | |||||||| | |||||||||||||
Sbjct 10750001 -ATGTAAACCCTCATCTCGACTAATAAGCTCACTGGAAAATGTGAGGCCAGGCATCAGTC 10749943
Query 19034 CTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTG 19093
| ||| || | ||| ||||| || ||||| || ||||||||| || ||| | |
Sbjct 10749942 CCTGTTTCTTGAGCCAAAATATTGATGCAAAAGAACCAGAAAAG---ATTTCTTTCGCAG 10749886
Query 19094 CTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTG 19153
| |||||||| || | ||||||||| |||| || |||| |||||| ||| |
Sbjct 10749885 CAGCAAAAGCTACAACATGTTCTCCATAGGTAGCCTCTTTATCCACAATCCAACACAGGG 10749826
Query 19154 CCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATAC 19213
| || |||||| || | ||| ||||| | || || | ||| || || | |
Sbjct 10749825 TCACGTCTGCCTTC---TTCATACAAGGCATCCTTTCAATGGCATTGAAGAGGAAGTCCC 10749769
Query 19214 GCTCATCTGTATCTTTAACATATGCATCTATCAATAA----ACTGTACATTTCTGAATGA 19269
|| | |||||| | || | | ||||||| ||||||||| | |||||
Sbjct 10749768 TTTCTTTGACATCTTT----TGTGTAAATGTCAATAAGGAGACTGTACATCCCAGAATGT 10749713
Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329
|| || || || || || || || || || ||||| | |||||||| || || |||||
Sbjct 10749712 ATGTTATCCATGGCAATTTGGAACCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTCT 10749653
Query 19330 CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCT 19389
| ||||| || |||| |||||||| ||||| |||||||| || ||||| || ||
Sbjct 10749652 TGGCTAAATCGCTCCACCATGTTTTCATTTACTATACCATCACTGGCAGCAAAGAAAGCC 10749593
Query 19390 AATACATGTTTAATAAA--ATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATA 19446
| || | ||||| || |||||| || | | || | | || ||| | | ||
Sbjct 10749592 AGAACGAGAGATATAAAGTATCTTTTTCTTCAG-GCTTCAGGGCTTCCCAGTGCTGAACG 10749534
Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506
|| || || | |||||| | ||| ||||||| || || ||| ||||| || |||||
Sbjct 10749533 TCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAAGGAGGCCCTGGCTTTCTTGTACATC 10749474
Query 19507 TTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544
| ||| |||||| | ||||| |||||||| ||||||||
Sbjct 10749473 TGCCAGATATCATGCTATTGCATAGGAAAGATAACAAA 10749436
>seq6
Length=52350410
Score = 176 bits (194), Expect = 5e-39
Identities = 503/763 (66%), Gaps = 19/763 (2%)
Strand=Plus/Minus
Query 18633 AAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTCGGCAACTCTT 18690
||||||||||| || || | || ||| |||||||| | ||||| || | |||||
Sbjct 1187476 AAAAGAATTCT--TCGTTGGGCTTGACATCACTCCCATCCTCTGATACTCTCCTACTCTA 1187419
Query 18691 TTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTT 18750
|| |||| ||||| ||||| ||| | | ||| ||| | || ||||||| ||
Sbjct 1187418 TTCTCAACTG--TTAGTCTTTCCTTCTGGTAAAATATTCTCCCTGAAGTCAAATGATATT 1187361
Query 18751 TTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTA 18810
| ||| | | || || || || | ||| | || || || || || ||||||| |
Sbjct 1187360 TCTACTCTGAAAATCTTGTTAAAATTGAGTTCCAGTATAAGCCTGTCTGCCACAAATTCA 1187301
Query 18811 ATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTA 18870
|| || ||||| | | |||||| |||| || | || ||||| | || |||||
Sbjct 1187300 ATGTACTGCTTCATTAAAGTACAATTTGTTCCAATGAGCTTCACAGGCAAGGCTTCTGTG 1187241
Query 18871 AGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACA--ACTCTATCTTCAT 18928
| | || | |||||| | || || | ||| | | || | | |||| | ||
Sbjct 1187240 AAGATCTCCTATTCTATCCTGACAGCAT-TGACA-ATTATTTCCTTGACTCGCTGCTCTG 1187183
Query 18929 TAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGT 18988
|| || || | || || ||||||| || ||||||||||| ||||| ||||| |
Sbjct 1187182 ATGGTTTGTGTACCAAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCAT 1187123
Query 18989 CTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACC 19048
|| ||| || | ||||| |||||||| | |||||||||||||| ||| | | ||
Sbjct 1187122 CTTGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCC 1187063
Query 19049 AGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTA 19108
||||| | | ||||| || |||||||||| || ||||| || || |||| ||| || |
Sbjct 1187062 AGAATGTTGGTGCAAAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTAC-A 1187004
Query 19109 GTCT-TTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTC 19167
| | |||||||| | || || || | |||||| || |||| || |||| |
Sbjct 1187003 GCATGTTCTCCATTGGTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCC 1186944
Query 19168 TTTTTTACACATG--GCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTAT 19225
|| |||| | |||| || || || | ||| | || | | || | | ||
Sbjct 1186943 TT-----CACAGGAAGCATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAAT 1186889
Query 19226 CTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCA 19285
|||||| | | | || | | | ||||||||| || ||| | || ||||| || ||
Sbjct 1186888 CTTTAATAGAAGTGTCAGTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAG 1186829
Query 19286 TCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA 19345
| || || || ||||| | |||||||| || || ||||| | ||||| ||
Sbjct 1186828 TTTGGAACCCAATGAAACAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCG 1186769
Query 19346 CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388
|||| |||||||| ||| | ||||||| || |||||||| ||
Sbjct 1186768 CCAAGTTTTCATTCACTGTGTCATCACTGGCAGCAAAAAAAGC 1186726
>seq175
Length=2612143
Score = 159 bits (176), Expect = 4e-34
Identities = 283/408 (69%), Gaps = 10/408 (2%)
Strand=Plus/Minus
Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200
||||||| || |||||||| || || || || ||| || ||| ||| || || | |||
Sbjct 1473361 ATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTA 1473302
Query 19201 AATAGATACATACGCTCATCT--GTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258
|||| | || | ||| ||| | |||| | | || |||||||||| ||| ||||| |
Sbjct 1473301 AATAAAAACT--CTCTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATA 1473244
Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318
| ||||| ||| ||| || || |||| ||| || || ||||| || |||| |
Sbjct 1473243 TCTCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAA 1473184
Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378
|| || || | || | || |||||||||||||| || ||| |||| || | ||
Sbjct 1473183 CGTGCACGTC----CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTG 1473128
Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA-TGTATTCCAA 19437
||||||| ||||| | || ||||||| || | ||||| | |||| | |||||
Sbjct 1473127 CAAAAAAGGCTAAGATGTGGGAGATAAAATTCTTCTTATCTG-GTTTAAGCGCGTTCCAG 1473069
Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497
| | | ||| || ||||| || | || || ||||||| || || | || ||||
Sbjct 1473068 TAAGGGAGATCCTTTGATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGC 1473009
Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAAT 19545
|||||||| ||||| |||||| | || || || ||||| || ||||||
Sbjct 1473008 TTATACATCTTCCAAATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961
>seq7443
Length=1322
Score = 131 bits (144), Expect = 2e-25
Identities = 240/345 (70%), Gaps = 10/345 (3%)
Strand=Plus/Minus
Query 18946 TGTTTAAACATCAAACATGCAAAATCACA-ATGTAGTCCCTCGTCTCTACTTATCAATTC 19004
|| || || ||| ||| ||||||||||| |||| ||||| ||| || || | ||
Sbjct 1099 TGCTTGAATATCTGACAGGCAAAATCACAGTTGTAAACCCTCATCTTGGCTAATAAGCTC 1040
Query 19005 ATTAGAAAATGTTAAAC-CAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAA 19063
||| |||||||| | | |||||||||| | ||| || | ||||||||| || ||||
Sbjct 1039 ATTGGAAAATGTGAGGCAGGGGCATCAGTCTCCATTTCTTGAGCCAGAATATTGATGCAA 980
Query 19064 ATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGT-CTTTCTCCATAA 19122
| || | ||||||||| || | ||| || || | |||||| || ||| | |||| ||||
Sbjct 979 AGGAACTAGAAAAGAAGATTCATTCCACAGCAGGAAAAGCTAC-AGTACATTCTGCATAG 921
Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACAT-GG 19181
|||| || || | | |||| | || | ||| || |||||||| ||||| ||
Sbjct 920 GTAGCCTCTTTGTCCCCATTCCAATGCAAGGTCCAGTCTGCCTTCTT-----CACATAGG 866
Query 19182 CATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATC 19241
|||||| | |||| ||| || || | | || | | ||||||| ||| | ||
Sbjct 865 CATTGTTGCAATAGTATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAGTATAAGTTTC 806
Query 19242 TATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCAT 19286
|| | | ||||||||| || ||||| || ||||| || |||||
Sbjct 805 AATAAGGAGACTGTACATCTCAGAATGTATGTTTTCCATGGCCAT 761
>seq83
Length=10591344
Score = 114 bits (126), Expect = 1e-20
Identities = 107/136 (79%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042
|||| |||| ||| || | ||||| |||||||| | |||||||||||||| | ||| |
Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217
Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102
| | ||||||||| || ||||| || ||||||||||| || ||||| || || |||||||
Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277
Query 19103 CAACTAGTCTTTCTCC 19118
| || | | ||||||
Sbjct 7356278 CTACCACACGTTCTCC 7356293
Score = 82.4 bits (90), Expect = 9e-11
Identities = 107/146 (73%), Gaps = 4/146 (3%)
Strand=Plus/Plus
Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669
||| |||||| | ||||| | ||||||||||| | || | || ||| ||||||||
Sbjct 7355261 TTAGAAATCAGCGTCCAAGGTGAAAGAATTCTC--CGTTGGGCTTGACATCACTCCCATC 7355318
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
| ||||| || | ||||| || |||||||| ||||| || || || | ||| |||
Sbjct 7355319 CTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 7355378
Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755
||||| || |||||||| || | |||
Sbjct 7355379 TCCATGAAGTCAAATGGGTTCTCTAC 7355404
>seq3
Length=68754498
Score = 93.3 bits (102), Expect = 5e-14
Identities = 123/171 (72%), Gaps = 0/171 (0%)
Strand=Plus/Plus
Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109
|||| || ||||| ||||| || || | ||| |||| | || || | ||||| || |
Sbjct 19110768 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCATAATTGGGCTCAGCGATATGGATGT 19110827
Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169
| | ||| || || |||||||| || || ||||| ||||||||||| | | || |
Sbjct 19110828 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGAACAGTTT 19110887
Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220
|||| | || |||||||| || ||||||| ||| || | ||| || ||||
Sbjct 19110888 TTTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTTAGGTCCTCAGGGA 19110938
Score = 93.3 bits (102), Expect = 5e-14
Identities = 101/134 (75%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387
||||||||||| || | ||||| || |||| || ||||| || || ||||| || ||
Sbjct 19114008 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATGGAC 19114067
Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447
|||||||| || | || ||||||||||| || || ||||| | |||| | ||| |||
Sbjct 19114068 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAACTA 19114127
Query 47448 TTTCTTACTCCATA 47461
||||| | |||||
Sbjct 19114128 TTTCTGATACCATA 19114141
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562032226728720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |