Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq57 293 3e-74 seq6 176 5e-39 seq175 159 4e-34 seq7443 131 2e-25 seq83 114 1e-20 seq3 93.3 5e-14 >seq57 Length=15126812 Score = 293 bits (324), Expect = 3e-74 Identities = 637/938 (68%), Gaps = 29/938 (3%) Strand=Plus/Minus Query 18619 TCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGAT 18676 ||| ||||||| |||||||||||| || | || ||| |||||||| | || | Sbjct 10750356 TCAGCATCCAAGCTGAAAGAATTCTCTG--TTGGGTTTGACATCACTCCCATCCTCTGGT 10750299 Query 18677 ATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAA 18736 || | ||||| || ||| |||| ||||| ||||| |||| ||| ||| ||||| | Sbjct 10750298 GCTCACCTACTCTCTTCTCAGAGAAGTTAGTCTTTCCTTCTAGTGAAATAATCTCCATGA 10750239 Query 18737 AATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTAT 18796 | |||||||| |||| ||| | | || || || || || | ||| | | || || | Sbjct 10750238 AGTCAAATGGGTTTTCTACTCTGAAAATCTTGTTAAAACCCATTTCCAGCATAAGCCTGT 10750179 Query 18797 CCGCTACAAATTTAATATATGTG-TTCATCATATCACAATTCATTCCTATTAATTTAACA 18855 | || ||||||| ||| | | || ||||| | | ||||||||||| || || || ||| Sbjct 10750178 CTGCCACAAATTCAATGT-TCTGCTTCATTAAAGTGCAATTCATTCCAATGAACTTCACA 10750120 Query 18856 GGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATAC- 18914 || | || ||||| || || || | |||||| | || || | ||| | | || | | Sbjct 10750119 GGCAAGGCCTCTGTGAGGAACTCCTCTTCTATTCTGACAGCAT-TGACA-ATTATTTCCT 10750062 Query 18915 -AACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCAC 18973 |||| | || || ||||| || || || |||| || || | |||||||| Sbjct 10750061 TGACTCACTACTCTAATGGTTTGTATACCAGGTGCTTGAACACCAGGCAGGTAAAATCAC 10750002 Query 18974 AATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTC 19033 ||||| ||||| |||| ||| || | ||| | |||||||| | ||||||||||||| Sbjct 10750001 -ATGTAAACCCTCATCTCGACTAATAAGCTCACTGGAAAATGTGAGGCCAGGCATCAGTC 10749943 Query 19034 CTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTG 19093 | ||| || | ||| ||||| || ||||| || ||||||||| || ||| | | Sbjct 10749942 CCTGTTTCTTGAGCCAAAATATTGATGCAAAAGAACCAGAAAAG---ATTTCTTTCGCAG 10749886 Query 19094 CTGCAAAAGCAACTAGTCTTTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTG 19153 | |||||||| || | ||||||||| |||| || |||| |||||| ||| | Sbjct 10749885 CAGCAAAAGCTACAACATGTTCTCCATAGGTAGCCTCTTTATCCACAATCCAACACAGGG 10749826 Query 19154 CCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATACATAC 19213 | || |||||| || | ||| ||||| | || || | ||| || || | | Sbjct 10749825 TCACGTCTGCCTTC---TTCATACAAGGCATCCTTTCAATGGCATTGAAGAGGAAGTCCC 10749769 Query 19214 GCTCATCTGTATCTTTAACATATGCATCTATCAATAA----ACTGTACATTTCTGAATGA 19269 || | |||||| | || | | ||||||| ||||||||| | ||||| Sbjct 10749768 TTTCTTTGACATCTTT----TGTGTAAATGTCAATAAGGAGACTGTACATCCCAGAATGT 10749713 Query 19270 ATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCA 19329 || || || || || || || || || || ||||| | |||||||| || || ||||| Sbjct 10749712 ATGTTATCCATGGCAATTTGGAACCCATAGAAACAGCGGGCTTCTGTAATTTGAACTTCT 10749653 Query 19330 CTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCT 19389 | ||||| || |||| |||||||| ||||| |||||||| || ||||| || || Sbjct 10749652 TGGCTAAATCGCTCCACCATGTTTTCATTTACTATACCATCACTGGCAGCAAAGAAAGCC 10749593 Query 19390 AATACATGTTTAATAAA--ATGTTTTTCATCTGAGGTTAATGTATT-CCAATCATTAATA 19446 | || | ||||| || |||||| || | | || | | || ||| | | || Sbjct 10749592 AGAACGAGAGATATAAAGTATCTTTTTCTTCAG-GCTTCAGGGCTTCCCAGTGCTGAACG 10749534 Query 19447 TCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACATG 19506 || || || | |||||| | ||| ||||||| || || ||| ||||| || ||||| Sbjct 10749533 TCCTTGGAAAGATCTACCACCTCAGCTGTCCAGAAGGAGGCCCTGGCTTTCTTGTACATC 10749474 Query 19507 TTCCATATATCACGATATTGTATAGGAAATATAACAAA 19544 | ||| |||||| | ||||| |||||||| |||||||| Sbjct 10749473 TGCCAGATATCATGCTATTGCATAGGAAAGATAACAAA 10749436 >seq6 Length=52350410 Score = 176 bits (194), Expect = 5e-39 Identities = 503/763 (66%), Gaps = 19/763 (2%) Strand=Plus/Minus Query 18633 AAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATTTTTTGATATTCGGCAACTCTT 18690 ||||||||||| || || | || ||| |||||||| | ||||| || | ||||| Sbjct 1187476 AAAAGAATTCT--TCGTTGGGCTTGACATCACTCCCATCCTCTGATACTCTCCTACTCTA 1187419 Query 18691 TTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTCCATAAAATCAAATGGATTT 18750 || |||| ||||| ||||| ||| | | ||| ||| | || ||||||| || Sbjct 1187418 TTCTCAACTG--TTAGTCTTTCCTTCTGGTAAAATATTCTCCCTGAAGTCAAATGATATT 1187361 Query 18751 TTTACATTATATAtttttttGAATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTA 18810 | ||| | | || || || || | ||| | || || || || || ||||||| | Sbjct 1187360 TCTACTCTGAAAATCTTGTTAAAATTGAGTTCCAGTATAAGCCTGTCTGCCACAAATTCA 1187301 Query 18811 ATATATGTGTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTA 18870 || || ||||| | | |||||| |||| || | || ||||| | || ||||| Sbjct 1187300 ATGTACTGCTTCATTAAAGTACAATTTGTTCCAATGAGCTTCACAGGCAAGGCTTCTGTG 1187241 Query 18871 AGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATAGATACA--ACTCTATCTTCAT 18928 | | || | |||||| | || || | ||| | | || | | |||| | || Sbjct 1187240 AAGATCTCCTATTCTATCCTGACAGCAT-TGACA-ATTATTTCCTTGACTCGCTGCTCTG 1187183 Query 18929 TAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGT 18988 || || || | || || ||||||| || ||||||||||| ||||| ||||| | Sbjct 1187182 ATGGTTTGTGTACCAAGTGCTTGAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCAT 1187123 Query 18989 CTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACC 19048 || ||| || | ||||| |||||||| | |||||||||||||| ||| | | || Sbjct 1187122 CTTGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCC 1187063 Query 19049 AGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTA 19108 ||||| | | ||||| || |||||||||| || ||||| || || |||| ||| || | Sbjct 1187062 AGAATGTTGGTGCAAAAGAACCAGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTAC-A 1187004 Query 19109 GTCT-TTCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTC 19167 | | |||||||| | || || || | |||||| || |||| || |||| | Sbjct 1187003 GCATGTTCTCCATTGGTCGCCTCTTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCC 1186944 Query 19168 TTTTTTACACATG--GCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTAT 19225 || |||| | |||| || || || | ||| | || | | || | | || Sbjct 1186943 TT-----CACAGGAAGCATCGTTTCAATGGCATTGACAAGGAATTCCCTTTCTTTGGAAT 1186889 Query 19226 CTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCA 19285 |||||| | | | || | | | ||||||||| || ||| | || ||||| || || Sbjct 1186888 CTTTAATAGAAGTGTCAGTAAGGAGACTGTACATCTCAGAACGTATGTTTTCAATGGCAG 1186829 Query 19286 TCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGA 19345 | || || || ||||| | |||||||| || || ||||| | ||||| || Sbjct 1186828 TTTGGAACCCAATGAAACAGCGAGCTTCTGTAATTTGAACTTCTTGGCCAAATCACTCCG 1186769 Query 19346 CCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 |||| |||||||| ||| | ||||||| || |||||||| || Sbjct 1186768 CCAAGTTTTCATTCACTGTGTCATCACTGGCAGCAAAAAAAGC 1186726 >seq175 Length=2612143 Score = 159 bits (176), Expect = 4e-34 Identities = 283/408 (69%), Gaps = 10/408 (2%) Strand=Plus/Minus Query 19141 ATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTA 19200 ||||||| || |||||||| || || || || ||| || ||| ||| || || | ||| Sbjct 1473361 ATCCATTGCAAGGCCCAATCTGCTTTTTTCTTAACAGATAGCACTGTTTCAATTGTGTTA 1473302 Query 19201 AATAGATACATACGCTCATCT--GTATCTTTAACATATGCATCTATCAATAAACTGTACA 19258 |||| | || | ||| ||| | |||| | | || |||||||||| ||| ||||| | Sbjct 1473301 AATAAAAACT--CTCTCTTCTTGGGATCTCTGATGTAAGCATCTATCAGTAAGCTGTATA 1473244 Query 19259 TTTCTGAATGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTA 19318 | ||||| ||| ||| || || |||| ||| || || ||||| || |||| | Sbjct 1473243 TCTCTGAGTGAGCATTCTCCATGAAAATCTAAAAGCCATAGAAACAGTGAGCCTCTGAAA 1473184 Query 19319 TCTGTACTTCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTG 19378 || || || | || | || |||||||||||||| || ||| |||| || | || Sbjct 1473183 CGTGCACGTC----CTAATGCGCTCTACCAAATTTTCATTTACAATTTCATCGCTGGTTG 1473128 Query 19379 CAAAAAATGCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAA-TGTATTCCAA 19437 ||||||| ||||| | || ||||||| || | ||||| | |||| | ||||| Sbjct 1473127 CAAAAAAGGCTAAGATGTGGGAGATAAAATTCTTCTTATCTG-GTTTAAGCGCGTTCCAG 1473069 Query 19438 TCATTAATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTT 19497 | | | ||| || ||||| || | || || ||||||| || || | || |||| Sbjct 1473068 TAAGGGAGATCCTTTGATAAGTCAAGCTCCTCTGCTGTCCAGAAGGATGTCTGGGCTTGC 1473009 Query 19498 TTATACATGTTCCATATATCACGATATTGTATAGGAAATATAACAAAT 19545 |||||||| ||||| |||||| | || || || ||||| || |||||| Sbjct 1473008 TTATACATCTTCCAAATATCAGGGTACTGGATTGGAAAAATGACAAAT 1472961 >seq7443 Length=1322 Score = 131 bits (144), Expect = 2e-25 Identities = 240/345 (70%), Gaps = 10/345 (3%) Strand=Plus/Minus Query 18946 TGTTTAAACATCAAACATGCAAAATCACA-ATGTAGTCCCTCGTCTCTACTTATCAATTC 19004 || || || ||| ||| ||||||||||| |||| ||||| ||| || || | || Sbjct 1099 TGCTTGAATATCTGACAGGCAAAATCACAGTTGTAAACCCTCATCTTGGCTAATAAGCTC 1040 Query 19005 ATTAGAAAATGTTAAAC-CAGGCATCAGTCCTCttttttttAACCAGAATATAGAAGCAA 19063 ||| |||||||| | | |||||||||| | ||| || | ||||||||| || |||| Sbjct 1039 ATTGGAAAATGTGAGGCAGGGGCATCAGTCTCCATTTCTTGAGCCAGAATATTGATGCAA 980 Query 19064 ATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGT-CTTTCTCCATAA 19122 | || | ||||||||| || | ||| || || | |||||| || ||| | |||| |||| Sbjct 979 AGGAACTAGAAAAGAAGATTCATTCCACAGCAGGAAAAGCTAC-AGTACATTCTGCATAG 921 Query 19123 CTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTTACACAT-GG 19181 |||| || || | | |||| | || | ||| || |||||||| ||||| || Sbjct 920 GTAGCCTCTTTGTCCCCATTCCAATGCAAGGTCCAGTCTGCCTTCTT-----CACATAGG 866 Query 19182 CATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACATATGCATC 19241 |||||| | |||| ||| || || | | || | | ||||||| ||| | || Sbjct 865 CATTGTTGCAATAGTATTGAAGAGGAATTCCCTTTCTTTGGAATCTTTAGTATAAGTTTC 806 Query 19242 TATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCAT 19286 || | | ||||||||| || ||||| || ||||| || ||||| Sbjct 805 AATAAGGAGACTGTACATCTCAGAATGTATGTTTTCCATGGCCAT 761 >seq83 Length=10591344 Score = 114 bits (126), Expect = 1e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 18983 CCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCtttttt 19042 |||| |||| ||| || | ||||| |||||||| | |||||||||||||| | ||| | Sbjct 7356158 CCTCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCT 7356217 Query 19043 ttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAG 19102 | | ||||||||| || ||||| || ||||||||||| || ||||| || || ||||||| Sbjct 7356218 TGAGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAG 7356277 Query 19103 CAACTAGTCTTTCTCC 19118 | || | | |||||| Sbjct 7356278 CTACCACACGTTCTCC 7356293 Score = 82.4 bits (90), Expect = 9e-11 Identities = 107/146 (73%), Gaps = 4/146 (3%) Strand=Plus/Plus Query 18612 TTAAAAATCAACATCCAAAGAAAAAGAATTCTCTTCATTAGAATT--CATTACTCCCATT 18669 ||| |||||| | ||||| | ||||||||||| | || | || ||| |||||||| Sbjct 7355261 TTAGAAATCAGCGTCCAAGGTGAAAGAATTCTC--CGTTGGGCTTGACATCACTCCCATC 7355318 Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 | ||||| || | ||||| || |||||||| ||||| || || || | ||| ||| Sbjct 7355319 CTCTGATACTCTCCTACTCTCTTCTCAAAGAAGTTAGTCTTCCCTTCCAGTGAAATATTC 7355378 Query 18730 TCCATAAAATCAAATGGATTTTTTAC 18755 ||||| || |||||||| || | ||| Sbjct 7355379 TCCATGAAGTCAAATGGGTTCTCTAC 7355404 >seq3 Length=68754498 Score = 93.3 bits (102), Expect = 5e-14 Identities = 123/171 (72%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 47050 TCCATCCATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATAT 47109 |||| || ||||| ||||| || || | ||| |||| | || || | ||||| || | Sbjct 19110768 TCCAGCCGTAGAAGTGCATGCTGGTGAGTTTGCCATAATTGGGCTCAGCGATATGGATGT 19110827 Query 47110 TAAGAGATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCC 47169 | | ||| || || |||||||| || || ||||| ||||||||||| | | || | Sbjct 19110828 TCAAAGACTGGCTTTGATCAATGAAAGCTCCTCTCTCAGCTGCCATCTTGAGAACAGTTT 19110887 Query 47170 TTTGTGGTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA 47220 |||| | || |||||||| || ||||||| ||| || | ||| || |||| Sbjct 19110888 TTTGAGAGATTTCCCATACAGTCTTATAAAGTTGCTTTAGGTCCTCAGGGA 19110938 Score = 93.3 bits (102), Expect = 5e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 47328 TGAAATTCTCCAGATAGTACTCTACGGCTATATATATTACTTGTATATGGTTCTATAGAT 47387 ||||||||||| || | ||||| || |||| || ||||| || || ||||| || || Sbjct 19114008 TGAAATTCTCCTGACAAGACTCTGCGAGTATAGATGTTACTGGTGTAAGGTTCAATGGAC 19114067 Query 47388 TCATTATTTCCAAAAATTTGAGCAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTA 47447 |||||||| || | || ||||||||||| || || ||||| | |||| | ||| ||| Sbjct 19114068 TCATTATTCCCCAGGATCTGAGCAGTTGAAGCAGTCGGCATTGGGGCAATAAGTAAACTA 19114127 Query 47448 TTTCTTACTCCATA 47461 ||||| | ||||| Sbjct 19114128 TTTCTGATACCATA 19114141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562032226728720