Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_016448.1 Length=196691 Score E Sequences producing significant alignments: (Bits) Value seq159 111 2e-19 >seq159 Length=3313288 Score = 111 bits (122), Expect = 2e-19 Identities = 160/226 (71%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 2229 AATCACAGTCAACTGTCTCAGAATCGGATCTGCGAGATCCATCTGACCTGTTCTGTCGAG 2288 ||||| | ||| ||||| ||| ||| ||| ||| ||||||| ||||| ||||| || Sbjct 2297409 AATCAGATTCAGCTGTCCGGGAACGGGACCTGTGAGGTCCATCTCACCTGCTCTGTGGAT 2297350 Query 2289 GATCCCAATGACAACATCTCCTTCAAATGGGAGGCCTTGGGCAAGACGCTTCTACGCGAG 2348 || | ||| ||| |||| | ||| ||| | || | | ||||| || | Sbjct 2297349 CATTCAAATTACACTGGCTCCATTGGGTGGCAGGTCCCAGGAAGCATCTTTCTAAGCCAA 2297290 Query 2349 CCCAACCTCACGACCTCCTGGGACCCCAGGAACAGCAGTGAGCAGAACTACACGTGCATC 2408 || |||||||| | |||||||||||||| ||| |||||| || ||||||| ||||| Sbjct 2297289 CCAAACCTCACCATCTCCTGGGACCCCAAGAATTCCAGTGAACAAAACTACATCTGCATA 2297230 Query 2409 GCCGAAAACGCTGTGAGCAATCTCTCTTTCACGGTCTCGGCCCAGA 2454 || | ||| | || |||||| | || ||| | ||||||||| ||| Sbjct 2297229 GCTGTGAACCCAGTCAGCAATGTGTCCTTCTCTGTCTCGGCCAAGA 2297184 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629197475896080