Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_016924.1
Length=185139
Score E
Sequences producing significant alignments: (Bits) Value
seq57 179 4e-40
seq6 140 4e-28
seq83 98.7 1e-15
>seq57
Length=15126812
Score = 179 bits (198), Expect = 4e-40
Identities = 498/747 (67%), Gaps = 25/747 (3%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930
||| |||||||| | || | || || |||| |||| || | || || ||||||||||
Sbjct 10750318 CATCACTCCCATCCTCTGGTGCTCACCTACTC-TCTTCTCAGAGAAGTTAGTCTTTCCTT 10750260
Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTAT--ATATAGTACTACA 36988
||||||| ||| | ||||| || |||||||| || | || | | | || | || |
Sbjct 10750259 CTAGTGAAATAATCTCCATGAAGTCAAATGGGTTT--TCTACTCTGAAAATCTTGTTAAA 10750202
Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCA 37046
| |||| || |||||| || || |||||||| |||| | ||||| || ||
Sbjct 10750201 ACCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGTTCTGCTTCATTAAAGTGCA 10750142
Query 37047 TAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTAT 37105
|| || ||||| | || || || | || ||| ||| ||| | | || ||||| |
Sbjct 10750141 A--TTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTT-CTATTCT 10750085
Query 37106 TACAGCATCTTTAACTATAT---TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATA 37162
||||||| || ||| | | || | ||| || | | | | ||| | |
Sbjct 10750084 GACAGCATTGACAATTATTTCCTTGAC--TCACTACTCTAATGGTTTG-TATACCAGGTG 10750028
Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222
|| |||| | || | ||||||||| |||||||| ||||||| ||| || | ||| |
Sbjct 10750027 CTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACT 10749969
Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282
||||| || | || ||||| | || ||| || | ||||||||||| |||||||||
Sbjct 10749968 GGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGA 10749909
Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342
|||||||||| | | ||| | || ||||| ||||||| | || || | || |
Sbjct 10749908 ACCAGAAAAGAT--TTCTTTCG-CAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGC 10749852
Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402
| ||| |||||| ||| |||||||| || | ||| || |
Sbjct 10749851 CTCTTTATCCACAATCCAACACAGGGTCACGTCTGCCTTC---TTCATACAAGGCATCCT 10749795
Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462
|||||| || || ||||| |||| |||||| |||| || | ||| | ||||| ||
Sbjct 10749794 TTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAATAAG 10749735
Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522
| ||| ||||| |||| || || || || || || || || || ||||| ||||| |
Sbjct 10749734 GAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAACAGCG 10749675
Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582
||||| | | |||||| || | ||| | || | | ||||||||| ||||| ||
Sbjct 10749674 GGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTATACC 10749615
Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAAC 37609
|||||| || ||||||||||| |||||
Sbjct 10749614 ATCACTGGCAGCAAAGAAAGCCAGAAC 10749588
>seq6
Length=52350410
Score = 140 bits (154), Expect = 4e-28
Identities = 483/744 (65%), Gaps = 17/744 (2%)
Strand=Plus/Minus
Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931
||| |||||||| | ||||| ||||| |||| | || || || |||||||||||
Sbjct 1187452 CATCACTCCCATCCTCTGATACTCTCCTACTCTATTCTC--AACTGTTAGTCTTTCCTTC 1187395
Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTAT--ATATAGTACTACAT 36989
| || | ||||| ||| | || ||||||| || | || | | | || | || |
Sbjct 1187394 TGGTAAAATATTCTCCCTGAAGTCAAATGA--TATTTCTACTCTGAAAATCTTGTTAAAA 1187337
Query 36990 GATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAG 37049
| |||| | |||||| || || |||||||| ||||| | ||||| | |
Sbjct 1187336 TTGAGTTCCAGTATAAGCCTGTCTGCCACAAATTCAATGTACTGCTTCATTAAAGTACAA 1187277
Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTAC 37108
||| | ||||| || || || || | || ||| |||||| | | || |||| | ||
Sbjct 1187276 TTTGTTCCAATGAGCTTCACAGGCAAGGCTTCTGTGAAGATCTCCTATT-CTATCCTGAC 1187218
Query 37109 AGCATCTTTAACTATATTAACAATAACTT-CT--TCAGTTGGGGGATATTTTAAATATTT 37165
||||| || ||| | | | ||| || || | ||| | | || | ||
Sbjct 1187217 AGCATTGACAATTATTT---CCTTGACTCGCTGCTCTGATGGTTTGTGTACCAAGTGCTT 1187161
Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225
|||| | || ||||||||||| |||| ||| |||||| ||| || | ||||| ||
Sbjct 1187160 GAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCATTGGA 1187101
Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285
||| || | || ||||| | || ||| | | ||| ||| ||| ||||||||| ||
Sbjct 1187100 AAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACC 1187041
Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345
|||||||| || ||||| || || |||| |||||| | || || || |
Sbjct 1187040 AGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTGGTCGCCTC 1186981
Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405
| || | |||||| | || ||||||| || ||| || |||||
Sbjct 1186980 TTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCC---TTCACAGGAAGCATCGTTTC 1186924
Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465
||| || || | || || | |||||| |||| | ||| |||| ||| | || |
Sbjct 1186923 AATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTAAGGAG 1186864
Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525
||| ||||| ||||| | || |||||||| || | || || ||| ||||| | |||
Sbjct 1186863 ACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGAGC 1186804
Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585
||| | | |||||| || | ||| | || || ||||||||||| ||| | ||||
Sbjct 1186803 TTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCATC 1186744
Query 37586 ACTAGCTGCAAAGAAAGCAAGAAC 37609
||| || ||||| ||||| || ||
Sbjct 1186743 ACTGGCAGCAAAAAAAGCCAGGAC 1186720
>seq83
Length=10591344
Score = 98.7 bits (108), Expect = 1e-15
Identities = 99/129 (77%), Gaps = 0/129 (0%)
Strand=Plus/Plus
Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259
||||||| ||| || | ||||| ||||| || | || ||||| | || | ||| ||
Sbjct 7356160 TCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCTTG 7356219
Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319
| ||| ||||||| ||||||||| ||||||||||| || ||||| || || ||||| |||
Sbjct 7356220 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCT 7356279
Query 37320 ACAAGACGT 37328
|| | ||||
Sbjct 7356280 ACCACACGT 7356288
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 592236111643920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |