Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq57 179 4e-40 seq6 140 4e-28 seq83 98.7 1e-15 >seq57 Length=15126812 Score = 179 bits (198), Expect = 4e-40 Identities = 498/747 (67%), Gaps = 25/747 (3%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTT-TCGAAAAAATTTGTCTTTCCTT 36930 ||| |||||||| | || | || || |||| |||| || | || || |||||||||| Sbjct 10750318 CATCACTCCCATCCTCTGGTGCTCACCTACTC-TCTTCTCAGAGAAGTTAGTCTTTCCTT 10750260 Query 36931 CTAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTAT--ATATAGTACTACA 36988 ||||||| ||| | ||||| || |||||||| || | || | | | || | || | Sbjct 10750259 CTAGTGAAATAATCTCCATGAAGTCAAATGGGTTT--TCTACTCTGAAAATCTTGTTAAA 10750202 Query 36989 TGATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTA--GTTCA 37046 | |||| || |||||| || || |||||||| |||| | ||||| || || Sbjct 10750201 ACCCATTTCCAGCATAAGCCTGTCTGCCACAAATTCAATGTTCTGCTTCATTAAAGTGCA 10750142 Query 37047 TAGTTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTAT 37105 || || ||||| | || || || | || ||| ||| ||| | | || ||||| | Sbjct 10750141 A--TTCATTCCAATGAACTTCACAGGCAAGGCCTCTGTGAGGAACTCCTCTT-CTATTCT 10750085 Query 37106 TACAGCATCTTTAACTATAT---TAACAATAACTTCTTCAGTTGGGGGATATTTTAAATA 37162 ||||||| || ||| | | || | ||| || | | | | ||| | | Sbjct 10750084 GACAGCATTGACAATTATTTCCTTGAC--TCACTACTCTAATGGTTTG-TATACCAGGTG 10750028 Query 37163 TTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATT 37222 || |||| | || | ||||||||| |||||||| ||||||| ||| || | ||| | Sbjct 10750027 CTTGAACACCAGGCAGGTAAAATCACA-TGTAAACCCTCATCTCGACTAATAAGCTCACT 10749969 Query 37223 AGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGA 37282 ||||| || | || ||||| | || ||| || | ||||||||||| ||||||||| Sbjct 10749968 GGAAAATGTGAGGCCAGGCATCAGTCCCTGTTTCTTGAGCCAAAATATTGATGCAAAAGA 10749909 Query 37283 TCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGA 37342 |||||||||| | | ||| | || ||||| ||||||| | || || | || | Sbjct 10749908 ACCAGAAAAGAT--TTCTTTCG-CAGCAGCAAAAGCTACAACATGTTCTCCATAGGTAGC 10749852 Query 37343 ACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGT 37402 | ||| |||||| ||| |||||||| || | ||| || | Sbjct 10749851 CTCTTTATCCACAATCCAACACAGGGTCACGTCTGCCTTC---TTCATACAAGGCATCCT 10749795 Query 37403 TTCAATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAG 37462 |||||| || || ||||| |||| |||||| |||| || | ||| | ||||| || Sbjct 10749794 TTCAATGGCATTGAAGAGGAAGTCCCTTTCTTTGACATCTTTTGTGTAAATGTCAATAAG 10749735 Query 37463 TAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCT 37522 | ||| ||||| |||| || || || || || || || || || ||||| ||||| | Sbjct 10749734 GAGACTGTACATCCCAGAATGTATGTTATCCATGGCAATTTGGAACCCATAGAAACAGCG 10749675 Query 37523 AGCTTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCC 37582 ||||| | | |||||| || | ||| | || | | ||||||||| ||||| || Sbjct 10749674 GGCTTCTGTAATTTGAACTTCTTGGCTAAATCGCTCCACCATGTTTTCATTTACTATACC 10749615 Query 37583 ATCACTAGCTGCAAAGAAAGCAAGAAC 37609 |||||| || ||||||||||| ||||| Sbjct 10749614 ATCACTGGCAGCAAAGAAAGCCAGAAC 10749588 >seq6 Length=52350410 Score = 140 bits (154), Expect = 4e-28 Identities = 483/744 (65%), Gaps = 17/744 (2%) Strand=Plus/Minus Query 36872 CATAACTCCCATTTTTTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTC 36931 ||| |||||||| | ||||| ||||| |||| | || || || ||||||||||| Sbjct 1187452 CATCACTCCCATCCTCTGATACTCTCCTACTCTATTCTC--AACTGTTAGTCTTTCCTTC 1187395 Query 36932 TAGTGATATATTTTCCATAAAATCAAATGGATTAGATGTATTAT--ATATAGTACTACAT 36989 | || | ||||| ||| | || ||||||| || | || | | | || | || | Sbjct 1187394 TGGTAAAATATTCTCCCTGAAGTCAAATGA--TATTTCTACTCTGAAAATCTTGTTAAAA 1187337 Query 36990 GATAATTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATTTACACATTAGTTCATAG 37049 | |||| | |||||| || || |||||||| ||||| | ||||| | | Sbjct 1187336 TTGAGTTCCAGTATAAGCCTGTCTGCCACAAATTCAATGTACTGCTTCATTAAAGTACAA 1187277 Query 37050 TTTATACCAATTAGTTTTACTGGAATTGCATCT-TGAAGAAATAGTTTTTCTATTATTAC 37108 ||| | ||||| || || || || | || ||| |||||| | | || |||| | || Sbjct 1187276 TTTGTTCCAATGAGCTTCACAGGCAAGGCTTCTGTGAAGATCTCCTATT-CTATCCTGAC 1187218 Query 37109 AGCATCTTTAACTATATTAACAATAACTT-CT--TCAGTTGGGGGATATTTTAAATATTT 37165 ||||| || ||| | | | ||| || || | ||| | | || | || Sbjct 1187217 AGCATTGACAATTATTT---CCTTGACTCGCTGCTCTGATGGTTTGTGTACCAAGTGCTT 1187161 Query 37166 AAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTACTTATCAATTCATTAGA 37225 |||| | || ||||||||||| |||| ||| |||||| ||| || | ||||| || Sbjct 1187160 GAACATCAGGCAGGCAAAATCACAGTGTAGACCCTCATCTTGACTAATAAGCTCATTGGA 1187101 Query 37226 AAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAATATTGCTGCAAAAGATCC 37285 ||| || | || ||||| | || ||| | | ||| ||| ||| ||||||||| || Sbjct 1187100 AAATGTGAGGCCAGGCATCAGTCCCTGTTTCCTGAGCCAGAATGTTGGTGCAAAAGAACC 1187041 Query 37286 AGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGTGTACCGAAAGTTGAACT 37345 |||||||| || ||||| || || |||| |||||| | || || || | Sbjct 1187040 AGAAAAGATGATTCCTTCCACAGCAGCAAGAGCTACAGCATGTTCTCCATTGGTCGCCTC 1186981 Query 37346 ATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTAACACATTCAATTGTTTC 37405 | || | |||||| | || ||||||| || ||| || ||||| Sbjct 1186980 TTTGTCTGCAATCCAACGCAAGGCCCCGTCTGCCTCC---TTCACAGGAAGCATCGTTTC 1186924 Query 37406 AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTATATAAGTATCAATTAGTAA 37465 ||| || || | || || | |||||| |||| | ||| |||| ||| | || | Sbjct 1186923 AATGGCATTGACAAGGAATTCCCTTTCTTTGGAATCTTTAATAGAAGTGTCAGTAAGGAG 1186864 Query 37466 ACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAAACCATAAAAACACCTAGC 37525 ||| ||||| ||||| | || |||||||| || | || || ||| ||||| | ||| Sbjct 1186863 ACTGTACATCTCAGAACGTATGTTTTCAATGGCAGTTTGGAACCCAATGAAACAGCGAGC 1186804 Query 37526 TTCAGATAATTGAACATCGTTAAAAAACCTCTTAGCTAAGTTTTCATTAACTATCCCATC 37585 ||| | | |||||| || | ||| | || || ||||||||||| ||| | |||| Sbjct 1186803 TTCTGTAATTTGAACTTCTTGGCCAAATCACTCCGCCAAGTTTTCATTCACTGTGTCATC 1186744 Query 37586 ACTAGCTGCAAAGAAAGCAAGAAC 37609 ||| || ||||| ||||| || || Sbjct 1186743 ACTGGCAGCAAAAAAAGCCAGGAC 1186720 >seq83 Length=10591344 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 37200 TCATCTCTACTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttA 37259 ||||||| ||| || | ||||| ||||| || | || ||||| | || | ||| || Sbjct 7356160 TCATCTCGACTAATAAGCTCATTGGAAAATGTGAGGCCAGGCATCAGTCCCCGTTTCTTG 7356219 Query 37260 ATCCAAAATATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCT 37319 | ||| ||||||| ||||||||| ||||||||||| || ||||| || || ||||| ||| Sbjct 7356220 AGCCAGAATATTGATGCAAAAGAACCAGAAAAGAAGATTCCTTCCACAGCAGCAAAAGCT 7356279 Query 37320 ACAAGACGT 37328 || | |||| Sbjct 7356280 ACCACACGT 7356288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 592236111643920