Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq19 239 4e-58 seq15 134 1e-26 seq34 100 2e-16 seq4 91.5 1e-13 >seq19 Length=34640225 Score = 239 bits (264), Expect = 4e-58 Identities = 382/541 (71%), Gaps = 8/541 (1%) Strand=Plus/Minus Query 29847 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29906 ||| ||||| || || ||| || || ||| | | || ||||||| ||||| || | Sbjct 4394423 GTGCACAAAGTCACC---TTC-AGGCCTGTGGTGGGTGCGCTCATGTAGGTGAGCAGGGC 4394368 Query 29907 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 29966 |||||||||||||| ||| | | || || |||||||| || ||||||||||| ||||| Sbjct 4394367 ATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTG 4394308 Query 29967 ACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGC 30026 || || |||| || | ||| || | | | || | || |||| ||||| || || Sbjct 4394307 GCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAGAGGGCATGGCCGGGAGGCAGCGC 4394248 Query 30027 CATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT 30086 ||| || | |||||| |||||||||||||||| | |||| | ||||| || ||||| Sbjct 4394247 CATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTGATTCTTCTGTCGTCAGGGTT 4394188 Query 30087 GTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30146 | | ||||| || | | | ||||||| || ||||| || ||||||| |||| Sbjct 4394187 GGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACTCCTTGTCCCGAGTCATCTGA 4394128 Query 30147 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30206 ||| || ||| || | |||||||||||||||||||| || ||||| || |||| Sbjct 4394127 ATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGGAAACCATACACTGGGCCCAA 4394068 Query 30207 GTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30265 | | || |||| | |||| ||| || |||| ||||| ||| ||| || || | Sbjct 4394067 GACCCCTTCTTGTC-GTGCAGAGAATTCCAAGCTGTCGAAAAAATCTTGGGACCCATTAG 4394009 Query 30266 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 30325 | ||||||||||| || |||| || || | ||||| |||||||| || || | Sbjct 4394008 CATCCCAGATCTTCACTGCCTTGGATGACAG-TTTTTGGCATTTGTGGATCC-CTTGGTA 4393951 Query 30326 ACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385 ||||||||||||||||| ||| ||||||| || || | ||| ||||| || |||| Sbjct 4393950 GCCACAGCAGCTCCTCCAAAACGCCCTTCCAGAACACGCGTTTGAATGTGAGTAGAGGAA 4393891 Query 30386 A 30386 | Sbjct 4393890 A 4393890 >seq15 Length=38784467 Score = 134 bits (148), Expect = 1e-26 Identities = 128/164 (78%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928 || || |||||||| || |||||||| ||||| || | |||||||||||||| ||||| Sbjct 20806127 AGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 20806186 Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988 || || || |||||||| || ||||||||||| ||||| || || | ||| || | | Sbjct 20806187 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCACC 20806246 Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032 ||||| ||||| |||| || ||||| ||||| || ||||| || Sbjct 20806247 ACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCAG 20806290 Score = 100 bits (110), Expect = 2e-16 Identities = 125/169 (74%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209 ||| || |||| ||||| || ||||||||||||||||| || || || || |||||||| Sbjct 20809572 CATATCTTTGTAGTCTGCCCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 20809631 Query 30210 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268 || |||| | |||| ||| ||| |||| | ||| |||| ||| || || || | Sbjct 20809632 CCCTTCTTGTC-GTGCAGAGAATCCCAAGCTGTCGAGAAAATCTCGGGACCCATTAGCAT 20809690 Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317 |||||||||| || ||||| || || ||||| | |||||||| || Sbjct 20809691 CCCAGATCTTCACTCCCTTGGATGACAGTTCTTTTGCATTTGTGGATCC 20809739 Score = 82.4 bits (90), Expect = 6e-11 Identities = 81/105 (77%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100 |||| |||||||||||||||| |||||| | ||||| || |||||| | ||||| || Sbjct 20807207 CTTTTGGGTTCCAGGCGCACATGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTGT 20807266 Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145 | | | ||||||||||| ||||| || |||||||| |||| Sbjct 20807267 CAATTACTTTTTGCAGCTGGTCCACTCCTTGTCCCGAGTAATCTG 20807311 >seq34 Length=25388739 Score = 100 bits (110), Expect = 2e-16 Identities = 182/260 (70%), Gaps = 11/260 (4%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| ||| || || ||||| | Sbjct 338307 ATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTGTATTAATTCTGTCCTT 338248 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | |||| || ||| || || ||||||||||| || || |||||||| ||||||| || Sbjct 338247 TAAGGGTCGATCCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATGATCACCAGATT 338188 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258 ||| || ||| |||||||| || | ||| | ||| | || | || || || || | Sbjct 338187 CTGTTTACCTTCCACTGAAGAGGTTG-TGTC-ATTCTCTGGAAATACTTGAACTCGTTCC 338130 Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317 || || |||| ||||| || ||||| || || ||||||||| ||||| || Sbjct 338129 TGAG------CGGGGGCCAGGGCAGTTCCCCGTTTTTGCCAATGCCCATGTTCTGG-GAC 338077 Query 112318 ACGGCCACGATACCGTTCAG 112337 ||||| ||||| | ||||| Sbjct 338076 ACGGCAACGATGCAATTCAG 338057 >seq4 Length=53591480 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 1/152 (1%) Strand=Plus/Minus Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139 ||||||||| || || || || || || || ||||| |||| || || ||||| | Sbjct 52663369 ATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 52663310 Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199 | |||| |||||| || || ||||||||||| || || |||||||| || |||| || Sbjct 52663309 GAAGGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATGATTACCAGATT 52663250 Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231 ||| || ||| |||||||| || | ||||| Sbjct 52663249 CTGTTTACCTTCCACTGAAGAGGT-GTGGTCA 52663219 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408563327665754