Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_017940.1
Length=127732
Score E
Sequences producing significant alignments: (Bits) Value
seq19 239 4e-58
seq15 134 1e-26
seq34 100 2e-16
seq4 91.5 1e-13
>seq19
Length=34640225
Score = 239 bits (264), Expect = 4e-58
Identities = 382/541 (71%), Gaps = 8/541 (1%)
Strand=Plus/Minus
Query 29847 GTGGACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGA 29906
||| ||||| || || ||| || || ||| | | || ||||||| ||||| || |
Sbjct 4394423 GTGCACAAAGTCACC---TTC-AGGCCTGTGGTGGGTGCGCTCATGTAGGTGAGCAGGGC 4394368
Query 29907 GTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTG 29966
|||||||||||||| ||| | | || || |||||||| || ||||||||||| |||||
Sbjct 4394367 ATAGCTGGCGATGTTGAAGCGCGCACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTG 4394308
Query 29967 ACACGAGAGCTCTCCGTCGCTCACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGC 30026
|| || |||| || | ||| || | | | || | || |||| ||||| || ||
Sbjct 4394307 GCAGGACGGCTCCCCATTCACCACTTAGAGCAGGCAGAGGGCATGGCCGGGAGGCAGCGC 4394248
Query 30027 CATGAGGCCCAAGTCTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTT 30086
||| || | |||||| |||||||||||||||| | |||| | ||||| || |||||
Sbjct 4394247 CATCAGAGGAAGGTCTTTTGGGTTCCAGGCGCACATGGTGATTCTTCTGTCGTCAGGGTT 4394188
Query 30087 GTTCCTGATGAGGTCCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGC 30146
| | ||||| || | | | ||||||| || ||||| || ||||||| ||||
Sbjct 4394187 GGTTTTGATGGTATCAATGACTTTTTGCAATTGGTCCACTCCTTGTCCCGAGTCATCTGA 4394128
Query 30147 CCTCATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAG 30206
||| || ||| || | |||||||||||||||||||| || ||||| || ||||
Sbjct 4394127 ATGCATATCTTTGTGGTCCACCCCGAAATGCCTCCACTGGAAACCATACACTGGGCCCAA 4394068
Query 30207 GTCTCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGG 30265
| | || |||| | |||| ||| || |||| ||||| ||| ||| || || |
Sbjct 4394067 GACCCCTTCTTGTC-GTGCAGAGAATTCCAAGCTGTCGAAAAAATCTTGGGACCCATTAG 4394009
Query 30266 CGTCCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGA 30325
| ||||||||||| || |||| || || | ||||| |||||||| || || |
Sbjct 4394008 CATCCCAGATCTTCACTGCCTTGGATGACAG-TTTTTGGCATTTGTGGATCC-CTTGGTA 4393951
Query 30326 ACCACAGCAGCTCCTCCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAGGAGGGGAA 30385
||||||||||||||||| ||| ||||||| || || | ||| ||||| || ||||
Sbjct 4393950 GCCACAGCAGCTCCTCCAAAACGCCCTTCCAGAACACGCGTTTGAATGTGAGTAGAGGAA 4393891
Query 30386 A 30386
|
Sbjct 4393890 A 4393890
>seq15
Length=38784467
Score = 134 bits (148), Expect = 1e-26
Identities = 128/164 (78%), Gaps = 0/164 (0%)
Strand=Plus/Plus
Query 29869 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 29928
|| || |||||||| || |||||||| ||||| || | |||||||||||||| |||||
Sbjct 20806127 AGGCCTGTGACGTGTGCGATCATGTAGGTGAGCAGGGCATAGCTGGCGATGTTGAAGGGC 20806186
Query 29929 ACCCCGAGCCCCATGTCCCCCGACCTCTGGTAGAGCTGACACGAGAGCTCTCCGTCGCTC 29988
|| || || |||||||| || ||||||||||| ||||| || || | ||| || | |
Sbjct 20806187 ACACCCAGGCCCATGTCTCCTGACCTCTGGTACAGCTGGCAGGACAACTCCCCATTCACC 20806246
Query 29989 ACGTAAAACTGACACATGGTGTGGCACGGAGGAAGAGCCATGAG 30032
||||| ||||| |||| || ||||| ||||| || ||||| ||
Sbjct 20806247 ACGTAGAACTGGCACAGGGCATGGCAGGGAGGCAGTGCCATCAG 20806290
Score = 100 bits (110), Expect = 2e-16
Identities = 125/169 (74%), Gaps = 2/169 (1%)
Strand=Plus/Plus
Query 30150 CATGTCCGTGTACTCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTC 30209
||| || |||| ||||| || ||||||||||||||||| || || || || ||||||||
Sbjct 20809572 CATATCTTTGTAGTCTGCCCCAAAATGCCTCCACTGGAAACCATAAACTGGGCCCAGGTC 20809631
Query 30210 TCCCTCTTCCCTGTGC-TCGAAGCCCCTCTTGTCCAAAAAGTCTCTGGAACCGTTGGCGT 30268
|| |||| | |||| ||| ||| |||| | ||| |||| ||| || || || |
Sbjct 20809632 CCCTTCTTGTC-GTGCAGAGAATCCCAAGCTGTCGAGAAAATCTCGGGACCCATTAGCAT 20809690
Query 30269 CCCAGATCTTTACCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCC 30317
|||||||||| || ||||| || || ||||| | |||||||| ||
Sbjct 20809691 CCCAGATCTTCACTCCCTTGGATGACAGTTCTTTTGCATTTGTGGATCC 20809739
Score = 82.4 bits (90), Expect = 6e-11
Identities = 81/105 (77%), Gaps = 0/105 (0%)
Strand=Plus/Plus
Query 30041 CTTTGGGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGATGAGGT 30100
|||| |||||||||||||||| |||||| | ||||| || |||||| | ||||| ||
Sbjct 20807207 CTTTTGGGTTCCAGGCGCACATGATGATTCTTCTGTCGTCAGGGTTGGTTTTGATGGTGT 20807266
Query 30101 CCACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTG 30145
| | | ||||||||||| ||||| || |||||||| ||||
Sbjct 20807267 CAATTACTTTTTGCAGCTGGTCCACTCCTTGTCCCGAGTAATCTG 20807311
>seq34
Length=25388739
Score = 100 bits (110), Expect = 2e-16
Identities = 182/260 (70%), Gaps = 11/260 (4%)
Strand=Plus/Minus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || || ||||| ||| || || ||||| |
Sbjct 338307 ATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTGTATTAATTCTGTCCTT 338248
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| |||| || ||| || || ||||||||||| || || |||||||| ||||||| ||
Sbjct 338247 TAAGGGTCGATCCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATGATCACCAGATT 338188
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCAAGGCTC-GAAAGTGTTTAAAATCTTTGC 112258
||| || ||| |||||||| || | ||| | ||| | || | || || || || |
Sbjct 338187 CTGTTTACCTTCCACTGAAGAGGTTG-TGTC-ATTCTCTGGAAATACTTGAACTCGTTCC 338130
Query 112259 AAAGTCTCGCAGGATGCCACGGCAGATCTCCGTTGTTCCCGATGCCCATG-TCTGGACAC 112317
|| || |||| ||||| || ||||| || || ||||||||| ||||| ||
Sbjct 338129 TGAG------CGGGGGCCAGGGCAGTTCCCCGTTTTTGCCAATGCCCATGTTCTGG-GAC 338077
Query 112318 ACGGCCACGATACCGTTCAG 112337
||||| ||||| | |||||
Sbjct 338076 ACGGCAACGATGCAATTCAG 338057
>seq4
Length=53591480
Score = 91.5 bits (100), Expect = 1e-13
Identities = 112/152 (74%), Gaps = 1/152 (1%)
Strand=Plus/Minus
Query 112080 ATGAGCTCCAGACGGGGGATCTTTAAGCTCCCTGCTGAGGACTACGTTTATCCTGTCTCT 112139
||||||||| || || || || || || || ||||| |||| || || ||||| |
Sbjct 52663369 ATGAGCTCCTTGTGGTGGGTCCTTGAGTTCTCTACTGAGAACTATATTAATTCTGTCCTT 52663310
Query 112140 CAGAGGTCTATTCTTTTCGGGGATGGAGAACCAAGTCTTTCTACCCATTATCACCACGTT 112199
| |||| |||||| || || ||||||||||| || || |||||||| || |||| ||
Sbjct 52663309 GAAGGGTCGATTCTTCTCAGGAATGGAGAACCAGGTTTTCCTACCCATGATTACCAGATT 52663250
Query 112200 CTGCTTGCCTCTGACTGAAGACGTAGCGGTCA 112231
||| || ||| |||||||| || | |||||
Sbjct 52663249 CTGTTTACCTTCCACTGAAGAGGT-GTGGTCA 52663219
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 408563327665754
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |