Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_017979.1
Length=43376
Score E
Sequences producing significant alignments: (Bits) Value
seq63 87.8 5e-13
>seq63
Length=13740492
Score = 87.8 bits (96), Expect = 5e-13
Identities = 182/266 (68%), Gaps = 5/266 (2%)
Strand=Plus/Plus
Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024
|||||| ||||| ||| ||||||| | || || || || | || | ||||||||
Sbjct 12331802 TGGATGCTATGGAAGAGTAGCTCCACGCTCTGGCTTGGCTGTAAAACACTTCATTGATGT 12331861
Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084
|| ||||||||||| ||| ||| | ||| || || |||||| |||| || ||||||||
Sbjct 12331862 AGGAGCTGGTGTTATAGATGAAGATTATAGAGGAAATGTTGGTTTTGTATTGTTTAATTT 12331921
Query 1085 TAGCGATAAGCGTTTTCATATTTCAAGA-GGTGATAGGATTGCTCAGTTAATTTGTGAAA 1143
| | | || ||| | | | || | || ||| ||||||| ||| | |||||||||
Sbjct 12331922 TGGGAAAGAGAAGTTTGA-AGTAAAACAGGGCGATCGGATTGCACAGCTTATTTGTGAAC 12331980
Query 1144 AGGCTGTTTT--TCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTC 1201
| | |||| |||| ||| || ||| | | || || | ||| |||||||
Sbjct 12331981 GGATTTTTTTTATCCAGACATAGAAGAAGTTCAGGTGCTGGATGACACAGAACGGGGTTC 12332040
Query 1202 TGCAGGATTTGGGTCTAC-CGGAAGA 1226
| ||| ||||| || || ||||||
Sbjct 12332041 GGGAGGGTTTGGTTCCACTGGGAAGA 12332066
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 138663652694088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |