Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_017979.1 Length=43376 Score E Sequences producing significant alignments: (Bits) Value seq63 87.8 5e-13 >seq63 Length=13740492 Score = 87.8 bits (96), Expect = 5e-13 Identities = 182/266 (68%), Gaps = 5/266 (2%) Strand=Plus/Plus Query 965 TGGATGTTATGGTAGAATAGCTCCTAGGTCCGGATTAGCGGCTAAGTTTATGATTGATGT 1024 |||||| ||||| ||| ||||||| | || || || || | || | |||||||| Sbjct 12331802 TGGATGCTATGGAAGAGTAGCTCCACGCTCTGGCTTGGCTGTAAAACACTTCATTGATGT 12331861 Query 1025 GGGTGCTGGTGTTATTGATCCAGACTTTAGGGGGAACGTTGGTGTTGTTTTATTTAATTT 1084 || ||||||||||| ||| ||| | ||| || || |||||| |||| || |||||||| Sbjct 12331862 AGGAGCTGGTGTTATAGATGAAGATTATAGAGGAAATGTTGGTTTTGTATTGTTTAATTT 12331921 Query 1085 TAGCGATAAGCGTTTTCATATTTCAAGA-GGTGATAGGATTGCTCAGTTAATTTGTGAAA 1143 | | | || ||| | | | || | || ||| ||||||| ||| | ||||||||| Sbjct 12331922 TGGGAAAGAGAAGTTTGA-AGTAAAACAGGGCGATCGGATTGCACAGCTTATTTGTGAAC 12331980 Query 1144 AGGCTGTTTT--TCCATCCATTCAAATAGTGGATTCCTTAGAGGATTCGGAAAGGGGTTC 1201 | | |||| |||| ||| || ||| | | || || | ||| ||||||| Sbjct 12331981 GGATTTTTTTTATCCAGACATAGAAGAAGTTCAGGTGCTGGATGACACAGAACGGGGTTC 12332040 Query 1202 TGCAGGATTTGGGTCTAC-CGGAAGA 1226 | ||| ||||| || || |||||| Sbjct 12332041 GGGAGGGTTTGGTTCCACTGGGAAGA 12332066 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 138663652694088