Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_018504.1
Length=123876
Score E
Sequences producing significant alignments: (Bits) Value
seq3 138 9e-28
seq73 93.3 3e-14
seq44 87.8 1e-12
>seq3
Length=68754498
Score = 138 bits (152), Expect = 9e-28
Identities = 153/204 (75%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
||||||||| || | ||||| |||||||| || | | || || |||| |||| |||
Sbjct 46699753 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGAACTCCCATCTTCCAGTTG 46699694
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
||| || ||||| |||| | ||| ||||| || ||||| ||||||||||| || || ||
Sbjct 46699693 CTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTT 46699634
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445
|||||| |||||| |||||| || | ||| || ||||| |||| || || || ||
Sbjct 46699633 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCCGT 46699574
Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469
| ||||| ||||| ||||||||
Sbjct 46699573 AAGGGTTTTCACAAAAATCTGCAT 46699550
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || |||||||| | || ||| | | |||| |||| ||
Sbjct 7045155 TGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCCTCCAGCTGT 7045214
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || | ||||| ||||| || || || ||||||||||| || ||||| || ||
Sbjct 7045215 TTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTG 7045274
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | |||||| | ||| || || || |||| || ||||| ||
Sbjct 7045275 GCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATGGTCTTGCCCGTC 7045334
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || ||| | || |||||
Sbjct 7045335 AGGGTCTTCACAGAGATTTGCAT 7045357
>seq73
Length=12918409
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/203 (70%), Gaps = 1/203 (0%)
Strand=Plus/Minus
Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326
|| ||||| || ||||| || || | |||||| | || ||| | | |||| ||| ||
Sbjct 707539 TGCAGGGTGGACTCTTTCTGGATGT-GTAATCAGAGAGAGTGCGGCCATCCTCCCGCTGT 707481
Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386
|| || || ||||||| ||||| || || || ||||||||||| || ||||| || ||
Sbjct 707480 TTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGGATCTTG 707421
Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446
|| ||| | || | |||||| | ||| || | || |||| |||||||| ||
Sbjct 707420 GTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATGGTTTTGCCCGTC 707361
Query 101447 AAAGTTTTTACAAATATCTGCAT 101469
| || || ||||| || |||||
Sbjct 707360 AGGGTCTTCACAAAGATTTGCAT 707338
>seq44
Length=18557718
Score = 87.8 bits (96), Expect = 1e-12
Identities = 143/205 (70%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325
|||||||||||| || ||||| || || || || | | ||| |||| | || |||
Sbjct 14945189 ATGAAGGGTAGACTCCTTTTGAATGTTCTAGTCAGACAAAGTATACCCATCTTTCAGTTG 14945130
Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385
|||||| ||| | |||| | ||| ||||| || | ||| || || ||||| || || ||
Sbjct 14945129 CTTACCAGCAGAGATCAGCCTCTGCTGATCAGGAGCAATTCCATCCTTATCCTGGATCTT 14945070
Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTC-AAGAGTGACCGTTTTGCCGG 101444
|||||| |||||| |||||| | | ||| || | ||| ||| | || || |
Sbjct 14945069 GGCCTTTACATTTTCTATAGTGTCCAAGGGTTCAACCCCTAAGCATGATGATCTTCCCCG 14945010
Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469
| ||||| ||||| ||||||||
Sbjct 14945009 CAAGGGTTTTCACAAAAATCTGCAT 14944985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396225766550586
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |