Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_018504.1 Length=123876 Score E Sequences producing significant alignments: (Bits) Value seq3 138 9e-28 seq73 93.3 3e-14 seq44 87.8 1e-12 >seq3 Length=68754498 Score = 138 bits (152), Expect = 9e-28 Identities = 153/204 (75%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 ||||||||| || | ||||| |||||||| || | | || || |||| |||| ||| Sbjct 46699753 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGAACTCCCATCTTCCAGTTG 46699694 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 ||| || ||||| |||| | ||| ||||| || ||||| ||||||||||| || || || Sbjct 46699693 CTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTT 46699634 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGT 101445 |||||| |||||| |||||| || | ||| || ||||| |||| || || || || Sbjct 46699633 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCCGT 46699574 Query 101446 TAAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 46699573 AAGGGTTTTCACAAAAATCTGCAT 46699550 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || |||||||| | || ||| | | |||| |||| || Sbjct 7045155 TGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGGCCATCCTCCAGCTGT 7045214 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || | ||||| ||||| || || || ||||||||||| || ||||| || || Sbjct 7045215 TTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCCTTGTCTTGGATCTTG 7045274 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||| || || || |||| || ||||| || Sbjct 7045275 GCCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTCTAGGGTGATGGTCTTGCCCGTC 7045334 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||| | || ||||| Sbjct 7045335 AGGGTCTTCACAGAGATTTGCAT 7045357 >seq73 Length=12918409 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/203 (70%), Gaps = 1/203 (0%) Strand=Plus/Minus Query 101267 TGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTGC 101326 || ||||| || ||||| || || | |||||| | || ||| | | |||| ||| || Sbjct 707539 TGCAGGGTGGACTCTTTCTGGATGT-GTAATCAGAGAGAGTGCGGCCATCCTCCCGCTGT 707481 Query 101327 TTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTTT 101386 || || || ||||||| ||||| || || || ||||||||||| || ||||| || || Sbjct 707480 TTGCCAGCGAATATCAGCCGCTGCTGGTCTGGAGGAATGCCTTCCTTGTCTTGGATCTTG 707421 Query 101387 TGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTCAAGAGTGACCGTTTTGCCGGTT 101446 || ||| | || | |||||| | ||| || | || |||| |||||||| || Sbjct 707420 GTCTTGACATTCTCGATGGTGTCACTGGGTTCAACCTGTAGGGTGATGGTTTTGCCCGTC 707361 Query 101447 AAAGTTTTTACAAATATCTGCAT 101469 | || || ||||| || ||||| Sbjct 707360 AGGGTCTTCACAAAGATTTGCAT 707338 >seq44 Length=18557718 Score = 87.8 bits (96), Expect = 1e-12 Identities = 143/205 (70%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 101266 ATGAAGGGTAGATTCTTTTTGTATATTGTAATCGGCGATAGTTCTGGCATCGTCCAATTG 101325 |||||||||||| || ||||| || || || || | | ||| |||| | || ||| Sbjct 14945189 ATGAAGGGTAGACTCCTTTTGAATGTTCTAGTCAGACAAAGTATACCCATCTTTCAGTTG 14945130 Query 101326 CTTACCTGCAAATATCAAACGCTGTTGATCGGGCGGAATGCCTTCTTTATCTTGAATTTT 101385 |||||| ||| | |||| | ||| ||||| || | ||| || || ||||| || || || Sbjct 14945129 CTTACCAGCAGAGATCAGCCTCTGCTGATCAGGAGCAATTCCATCCTTATCCTGGATCTT 14945070 Query 101386 TTGTTTTACAATTTCTACAGTGTCAGACGTTTCCACTTC-AAGAGTGACCGTTTTGCCGG 101444 |||||| |||||| |||||| | | ||| || | ||| ||| | || || | Sbjct 14945069 GGCCTTTACATTTTCTATAGTGTCCAAGGGTTCAACCCCTAAGCATGATGATCTTCCCCG 14945010 Query 101445 TTAAAGTTTTTACAAATATCTGCAT 101469 | ||||| ||||| |||||||| Sbjct 14945009 CAAGGGTTTTCACAAAAATCTGCAT 14944985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396225766550586