Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30]
10,898 sequences; 2,835,250,225 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq63 98.7 8e-16
seq4 98.7 8e-16
seq58 91.5 1e-13
seq138 87.8 1e-12
seq93 87.8 1e-12
seq7 86.0 5e-12
seq3 86.0 5e-12
seq57 82.4 6e-11
>seq63
Length=13740492
Score = 98.7 bits (108), Expect = 8e-16
Identities = 189/271 (70%), Gaps = 6/271 (2%)
Strand=Plus/Minus
Query 8991 TTAATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGT 9050
|||||| | || || || |||||||||||| || || | |||||| || | | |
Sbjct 12332071 TTAATTCTTCCCAGTGGAACCAAACCCTCCCGAACCCCGTTCTGTGTCA-TCCAGCACCT 12332013
Query 9051 -AACCTCTACCA-GTGTGG-GATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTC 9107
||| ||| | | || ||| | |||| || |||||||||| | || ||||||| ||
Sbjct 12332012 GAACTTCTTCTATGTCTGGATAAAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGATC 12331953
Query 9108 CCCCTTATTCACGACAAA-GTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTAC 9166
|||| || || |||| ||| | || || ||| |||| || | || || || |
Sbjct 12331952 GCCCTGTTTTACTTCAAACTTCTCTTTCCCAA-AATTAAACAATACAAAACCAACATTTC 12331894
Query 9167 CCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTC 9226
| || ||||| ||||| || |||||||| || || || |||||||| || || || | |
Sbjct 12331893 CTCTATAATCTTCATCTATAACACCAGCTCCTACATCAATGAAGTGTTTTACAGCCAAGC 12331834
Query 9227 CAGAGCGGGGCGCGATTCGACCGTAGCATCC 9257
||||||| || || | || || ||||||||
Sbjct 12331833 CAGAGCGTGGAGCTACTCTTCCATAGCATCC 12331803
>seq4
Length=53591480
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/214 (70%), Gaps = 0/214 (0%)
Strand=Plus/Minus
Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613
|| ||| | ||| || ||| ||| ||||| |||||||| ||||| | | | || || ||
Sbjct 13584064 CAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGCTCATC 13584005
Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673
|||| ||||| || ||||| ||||| | ||| ||||| | |||| || ||||| ||
Sbjct 13584004 TTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 13583945
Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733
||||| |||||| | | || ||||| | || || || | ||| || ||
Sbjct 13583944 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGATGGT 13583885
Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|| ||| | | ||||| |||||||||||||||
Sbjct 13583884 CTTCCCCATAAGGGTTTTCACAAAAATCTGCATC 13583851
>seq58
Length=14941408
Score = 91.5 bits (100), Expect = 1e-13
Identities = 143/205 (70%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622
||| || ||| || |||||||||||||| ||||| | | | || | || |||| ||
Sbjct 5525701 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 5525760
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
||| || ||||| |||| || ||| ||||| | |||| || ||||| || |||||
Sbjct 5525761 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 5525820
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
|||||| | | || || || | || ||||| | ||| || || || |||||
Sbjct 5525821 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGT 5525880
Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767
| ||||| || ||||||||||||
Sbjct 5525881 AAGGGTTTTCACGAAAATCTGCATC 5525905
>seq138
Length=5537732
Score = 87.8 bits (96), Expect = 1e-12
Identities = 135/193 (70%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| |||||||||||||| ||||| | | | || | || |||| ||||| || | |||
Sbjct 893875 CTCCTTTTGAATATTGTAGTCAGAAAAAGTACGCCCATCTTCCAGTTGCTTTCCAGAAAA 893816
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|||| || ||| ||||| | |||| || ||||| || ||||| ||||||
Sbjct 893815 GATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT 893756
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | || || | | ||| ||||| | | |||| || | ||||| | ||||| ||
Sbjct 893755 TTCTATAGTGTCCAAGGGCTCAACCTCAAGCATAATGGTCGTCCCCGTAAGGGTTTTCAC 893696
Query 48755 AAAAATCTGCATC 48767
|||||||||||||
Sbjct 893695 AAAAATCTGCATC 893683
>seq93
Length=9247444
Score = 87.8 bits (96), Expect = 1e-12
Identities = 146/209 (70%), Gaps = 4/209 (2%)
Strand=Plus/Plus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCG---ATCGTCGT-CCA 48618
||| || ||| ||| |||||||||||||| ||||| | | | || ||| || | |||
Sbjct 8914057 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCTTCCA 8914116
Query 48619 ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678
||||| || ||||| |||| || ||| ||||| | |||| || ||||| || |
Sbjct 8914117 GTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 8914176
Query 48679 TCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTC 48738
|||| |||||| | | || || || | || ||||| | ||| || || || |
Sbjct 8914177 TCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCC 8914236
Query 48739 CCGTCAAAGTTTTTACAAAAATCTGCATC 48767
|||| | ||||| || ||||||||||||
Sbjct 8914237 CCGTAAGGGTTTTCACGAAAATCTGCATC 8914265
>seq7
Length=50527172
Score = 86.0 bits (94), Expect = 5e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Plus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622
||| || ||| ||| |||||||||||||| ||||| | | | || | || |||| ||
Sbjct 41286065 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 41286124
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
||| || ||||| |||| || ||| ||||| | |||| || ||||| || |||||
Sbjct 41286125 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 41286184
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
|||||| | | || || || | || |||| | || || || || |||||
Sbjct 41286185 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGT 41286244
Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767
| ||||| || ||||||||||||
Sbjct 41286245 AAGGGTTTTCACGAAAATCTGCATC 41286269
>seq3
Length=68754498
Score = 86.0 bits (94), Expect = 5e-12
Identities = 142/205 (69%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622
||| || ||| || |||||||||||||| ||||| | | | | || |||| ||
Sbjct 46699753 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGAACTCCCATCTTCCAGTTG 46699694
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
||| || ||||| ||||||| ||| ||||| | |||| || || || || |||||
Sbjct 46699693 CTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTT 46699634
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
|||||| | | || || || | || ||||| | ||| || || || |||||
Sbjct 46699633 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCCGT 46699574
Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767
| ||||| |||||||||||||||
Sbjct 46699573 AAGGGTTTTCACAAAAATCTGCATC 46699549
Score = 82.4 bits (90), Expect = 6e-11
Identities = 93/125 (74%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| |||| ||||| || || ||| |||||| || || ||||||||||| ||| | ||
Sbjct 7045140 AGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGG 7045199
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668
| || |||| ||| || || || | |||||| ||||| || || | |||| ||| |||
Sbjct 7045200 CCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCC 7045259
Query 48669 TTGTC 48673
|||||
Sbjct 7045260 TTGTC 7045264
>seq57
Length=15126812
Score = 82.4 bits (90), Expect = 6e-11
Identities = 99/135 (73%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598
||| ||||| || || | |||| || || ||| |||||| || || |||||||||||
Sbjct 1409832 GCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 1409773
Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658
||| | || | || |||| |||||| || || || || || ||||| || || | |||
Sbjct 1409772 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGG 1409713
Query 48659 AACGCCCTCCTTGTC 48673
| ||| ||||||||
Sbjct 1409712 GATGCCTTCCTTGTC 1409698
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380887004106054
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |