Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Jaculus_20jaculus_20[refseq_20GCF_5F000280705.1_202012-07-30] 10,898 sequences; 2,835,250,225 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq63 98.7 8e-16 seq4 98.7 8e-16 seq58 91.5 1e-13 seq138 87.8 1e-12 seq93 87.8 1e-12 seq7 86.0 5e-12 seq3 86.0 5e-12 seq57 82.4 6e-11 >seq63 Length=13740492 Score = 98.7 bits (108), Expect = 8e-16 Identities = 189/271 (70%), Gaps = 6/271 (2%) Strand=Plus/Minus Query 8991 TTAATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGTCGTGGAAGT 9050 |||||| | || || || |||||||||||| || || | |||||| || | | | Sbjct 12332071 TTAATTCTTCCCAGTGGAACCAAACCCTCCCGAACCCCGTTCTGTGTCA-TCCAGCACCT 12332013 Query 9051 -AACCTCTACCA-GTGTGG-GATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTC 9107 ||| ||| | | || ||| | |||| || |||||||||| | || ||||||| || Sbjct 12332012 GAACTTCTTCTATGTCTGGATAAAAAAAATCCGTTCACAAATAAGCTGTGCAATCCGATC 12331953 Query 9108 CCCCTTATTCACGACAAA-GTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTAC 9166 |||| || || |||| ||| | || || ||| |||| || | || || || | Sbjct 12331952 GCCCTGTTTTACTTCAAACTTCTCTTTCCCAA-AATTAAACAATACAAAACCAACATTTC 12331894 Query 9167 CCCTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTC 9226 | || ||||| ||||| || |||||||| || || || |||||||| || || || | | Sbjct 12331893 CTCTATAATCTTCATCTATAACACCAGCTCCTACATCAATGAAGTGTTTTACAGCCAAGC 12331834 Query 9227 CAGAGCGGGGCGCGATTCGACCGTAGCATCC 9257 ||||||| || || | || || |||||||| Sbjct 12331833 CAGAGCGTGGAGCTACTCTTCCATAGCATCC 12331803 >seq4 Length=53591480 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 48554 CAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTC 48613 || ||| | ||| || ||| ||| ||||| |||||||| ||||| | | | || || || Sbjct 13584064 CAGCACAAGATGAAGGGTGGACTCCTTTTGGATATTGTAGTCAGACAAAGTACGCTCATC 13584005 Query 48614 GTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTC 48673 |||| ||||| || ||||| ||||| | ||| ||||| | |||| || ||||| || Sbjct 13584004 TTCCAGTTGCTTTCCAGCAAAGATCAGCCTCTGCTGATCAGGAGGAATTCCTTCCTTATC 13583945 Query 48674 GCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGT 48733 ||||| |||||| | | || ||||| | || || || | ||| || || Sbjct 13583944 CTGGATCTTGGCCTTTACATTTTCTATAGTGTCTGAGGGTTCAACATCAAGCGTGATGGT 13583885 Query 48734 TTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || ||| | | ||||| ||||||||||||||| Sbjct 13583884 CTTCCCCATAAGGGTTTTCACAAAAATCTGCATC 13583851 >seq58 Length=14941408 Score = 91.5 bits (100), Expect = 1e-13 Identities = 143/205 (70%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || |||||||||||||| ||||| | | | || | || |||| || Sbjct 5525701 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 5525760 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| |||| || ||| ||||| | |||| || ||||| || ||||| Sbjct 5525761 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 5525820 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 |||||| | | || || || | || ||||| | ||| || || || ||||| Sbjct 5525821 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCCCCGT 5525880 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 | ||||| || |||||||||||| Sbjct 5525881 AAGGGTTTTCACGAAAATCTGCATC 5525905 >seq138 Length=5537732 Score = 87.8 bits (96), Expect = 1e-12 Identities = 135/193 (70%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| |||||||||||||| ||||| | | | || | || |||| ||||| || | ||| Sbjct 893875 CTCCTTTTGAATATTGTAGTCAGAAAAAGTACGCCCATCTTCCAGTTGCTTTCCAGAAAA 893816 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 |||| || ||| ||||| | |||| || ||||| || ||||| |||||| Sbjct 893815 GATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTTGGCCTTTACATT 893756 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | || || | | ||| ||||| | | |||| || | ||||| | ||||| || Sbjct 893755 TTCTATAGTGTCCAAGGGCTCAACCTCAAGCATAATGGTCGTCCCCGTAAGGGTTTTCAC 893696 Query 48755 AAAAATCTGCATC 48767 ||||||||||||| Sbjct 893695 AAAAATCTGCATC 893683 >seq93 Length=9247444 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCG---ATCGTCGT-CCA 48618 ||| || ||| ||| |||||||||||||| ||||| | | | || ||| || | ||| Sbjct 8914057 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCTTCCA 8914116 Query 48619 ACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAA 48678 ||||| || ||||| |||| || ||| ||||| | |||| || ||||| || | Sbjct 8914117 GTTGCTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGA 8914176 Query 48679 TCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTC 48738 |||| |||||| | | || || || | || ||||| | ||| || || || | Sbjct 8914177 TCTTGGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCGAGCGTGATGGTCTTCC 8914236 Query 48739 CCGTCAAAGTTTTTACAAAAATCTGCATC 48767 |||| | ||||| || |||||||||||| Sbjct 8914237 CCGTAAGGGTTTTCACGAAAATCTGCATC 8914265 >seq7 Length=50527172 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| ||| |||||||||||||| ||||| | | | || | || |||| || Sbjct 41286065 ATGAAGGGTGGACTCCTTTTGAATATTGTAGTCAGACAAAGTACGCCCATCTTCCAGTTG 41286124 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| |||| || ||| ||||| | |||| || ||||| || ||||| Sbjct 41286125 CTTTCCAGCAAAGATCAATCTCTGCTGATCAGGAGGAATTCCTTCCTTATCCTGGATCTT 41286184 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 |||||| | | || || || | || |||| | || || || || ||||| Sbjct 41286185 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAGCCTCGAGGGTGATGGTCTTCCCCGT 41286244 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 | ||||| || |||||||||||| Sbjct 41286245 AAGGGTTTTCACGAAAATCTGCATC 41286269 >seq3 Length=68754498 Score = 86.0 bits (94), Expect = 5e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| || ||| || |||||||||||||| ||||| | | | | || |||| || Sbjct 46699753 ATGAAGGGTGGACTTCTTTTGAATATTGTAGTCAGACAAAGAACTCCCATCTTCCAGTTG 46699694 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 ||| || ||||| ||||||| ||| ||||| | |||| || || || || ||||| Sbjct 46699693 CTTTCCAGCAAAGATCAGTCTCTGCTGATCAGGAGGAATTCCTTCTTTATCCTGGATCTT 46699634 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 |||||| | | || || || | || ||||| | ||| || || || ||||| Sbjct 46699633 GGCCTTTACATTTTCTATAGTGTCCGAGGGTTCAACCTCAAGCGTGATGGTCTTCCCCGT 46699574 Query 48743 CAAAGTTTTTACAAAAATCTGCATC 48767 | ||||| ||||||||||||||| Sbjct 46699573 AAGGGTTTTCACAAAAATCTGCATC 46699549 Score = 82.4 bits (90), Expect = 6e-11 Identities = 93/125 (74%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| || || ||| |||||| || || ||||||||||| ||| | || Sbjct 7045140 AGGCGCACCACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGAGAGAGTGCGG 7045199 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| ||| || || || | |||||| ||||| || || | |||| ||| ||| Sbjct 7045200 CCATCCTCCAGCTGTTTGCCAGCGAGTATCAGCCGCTGCTGGTCTGGTGGAATGCCTTCC 7045259 Query 48669 TTGTC 48673 ||||| Sbjct 7045260 TTGTC 7045264 >seq57 Length=15126812 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| || || | |||| || || ||| |||||| || || ||||||||||| Sbjct 1409832 GCCACCCCTAAGACGGAGGACCAGGTGCAGGGTGGACTCTTTCTGGATGTTGTAATCAGA 1409773 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 ||| | || | || |||| |||||| || || || || || ||||| || || | ||| Sbjct 1409772 AAGAGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCAGGGGG 1409713 Query 48659 AACGCCCTCCTTGTC 48673 | ||| |||||||| Sbjct 1409712 GATGCCTTCCTTGTC 1409698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380887004106054